Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g01665 ATGGAACCCAATGAAAACCAGCTCAGCTCCTACTTCCACCACCATCAACACCACCATCAGAGTCCCACCACATCGCCGACCAATGGCCTTTTACCACCCACCCACCACCTCTCCTCCGCCGCCGCCGCCTCCGACGCCGGCCCTCATGTCGTATACCCTCACTCTGTCCCTTCCGCCGCCGTGTCCTCGTCTCCTCTCGAGCCCGCACGCCGGAAGAGAGGCCGGCCGAGGAAGTACGGCACGCCGGAAGAAGCTTTAGCGGCTAAAAAAGCTGCTACGGCGTCGTCTCACTCTTCGTCCTCTAAGGCTAAGAAGGAACTCGCTTCTTCTTCTTCCCTTAATGCCGTTTCCGCTTCTTCTTCCTTCTCCGCGCCTTCCAAAAAATCTCAGTTGGCTGCACTTGATACTTACTTGGAGTTTGTTCTTCTTACTGGAGATACAGGTAATGCAGGCCAAGGTTTTGCGCCACATGTTATTAATGTGGCAGCTGGTGAGGGAAGTGGAGCTGTGGTGGTCTGGCGGCTTAATTTCATGGATGTGGGCCAGAAAATTATGATGTTTATGCAACAATGTAAGCGGGAAATTTGTATCCTTTCTGCATCTGGTTCAATCTCCAATGCATCTCTCCGTCAGCCAGCCGCATCCGGAGGCAATATTGCATATGAGGGTCGTTTTGAGATTGTTTCGTTATGCGGATCTTATGTACGAACTGACCTTGGAGGAAAGACGGGTGGTCTTAGTGTATGTCTATCAAGTGCTGAAGGCCACATCATAGGAGGGGGAGTTGGTGGACCGTTGAAGGCTGCTGGACCCGTGCAGGTTATTGTTGGAACCTTCGTAATCGACCCCAAGAAGGAAGTTGGTGGTGGTAAAGGCGATGCATCTGCTGGCAAGTTGTCCTCACCTATTGGTGGGACATCGATGTCAAATCTACGCTATGGCTCCAACATTGACTCGGGAGGTAATCATGTAAGGGGAAATGATGAACACCAAGGTCTTGGAGAGGGTCATTTTTTGCTTCAGCCCCGGGGAGTGAATCTGACATCACCGCGATCAACGGATTGGAGAACGGGTCTGGATGCCACAAACACTGCTTATGATTTGACAGGAAGAACAGGCCATCATTCTCCCGAAAACGGAGATTACGATCAGATTCCCGATTGA 1164 51.55 MEPNENQLSSYFHHHQHHHQSPTTSPTNGLLPPTHHLSSAAAASDAGPHVVYPHSVPSAAVSSSPLEPARRKRGRPRKYGTPEEALAAKKAATASSHSSSSKAKKELASSSSLNAVSASSSFSAPSKKSQLAALDTYLEFVLLTGDTGNAGQGFAPHVINVAAGEGSGAVVVWRLNFMDVGQKIMMFMQQCKREICILSASGSISNASLRQPAASGGNIAYEGRFEIVSLCGSYVRTDLGGKTGGLSVCLSSAEGHIIGGGVGGPLKAAGPVQVIVGTFVIDPKKEVGGGKGDASAGKLSSPIGGTSMSNLRYGSNIDSGGNHVRGNDEHQGLGEGHFLLQPRGVNLTSPRSTDWRTGLDATNTAYDLTGRTGHHSPENGDYDQIPD 387
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 31493053 31499454 - ClCG02G016970.2 Cla02g01665 267791
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g01665 387 MobiDBLite consensus disorder prediction 340 359 - -
Cla02g01665 387 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 14 1 378 - -
Cla02g01665 387 SUPERFAMILY AF0104/ALDC/Ptd012-like 179 280 - -
Cla02g01665 387 MobiDBLite consensus disorder prediction 1 105 - -
Cla02g01665 387 CDD DUF296 156 279 IPR005175 -
Cla02g01665 387 Pfam Plants and Prokaryotes Conserved (PCC) domain 179 280 IPR005175 -
Cla02g01665 387 ProSiteProfiles PPC domain profile profile. 163 304 IPR005175 -
Cla02g01665 387 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 1 378 IPR039605 GO:0003680
Cla02g01665 387 MobiDBLite consensus disorder prediction 345 359 - -
Cla02g01665 387 Gene3D - 178 288 - -
Cla02g01665 387 MobiDBLite consensus disorder prediction 365 387 - -
Cla02g01665 387 MobiDBLite consensus disorder prediction 314 335 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g01665 Cla-Chr2:31493053 Cla08g00927 Cla-Chr8:21810985 4.32E-42 dispersed
Cla02g01665 Cla-Chr2:31493053 Cla06g00354 Cla-Chr6:4478870 4.50E-39 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g01665 - - csv:101221844 544.273