Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g01676 ATGAAATTTGCTTCGTTGATTCAGTTTGAGTTGATCGGAAGATCCAAAACCTTCATCATTGGCGGCAGAAATTGCCACCGGAAACACGTCGAAGACGGTTCAAATCCGGCGGCGGATATGGCGGATAAAGGCAGAGACGGCGGCCACTCGAGTTTACTCGACGGGAAGTACGAATTAGGCCGTCTTCTAGGGCATGGAACCTTCGCTAAGGTTTATCATGCTCGGAATCTGCGAACGGGGAAGAGCGTCGCGATGAAAGTGGTTGGGAAGGAGAAGATCATTAAAGTCGGCATGACGGAGCAGATCAAGAGAGAAATCTCTGTGATGAAAATGGTGAAGCATCCGAATATTGTGGAGCTTCATGAGGTGATGGCGAGTAAATCGAAGATCTATTTCGCGATGGAGTTCGTTAGAGGCGGTGAACTGTTCTCCAAAATCGCGAAAGGTCGGTTGCGAGAGGATGTGGCTAGGGTTTACTTTCAGCAATTAATCTCTGCAATCGATTTCTGCCATAGCCGTGGAGTTTACCACCGTGATCTGAAACCGGAAAACCTCCTACTCGACGAAGACGGTAACCTCAAGGTCACCGACTTCGGCCTCACCGCCTTCTCAGAGCACTTGAAGCAAGACGGATTGTTGCATACAACGTGTGGAACTCCGGCGTACGTCGCGCCGGAGGTCATCGGAAAGCAAGGATACGACGGCGCGAAGGCCGATCTGTGGTCTTGTGGAGTCATCCTTTACGTTCTTCTCGCCGGATACCTTCCATTCCAGGATGACAACATGGTGGCGATGTACCGGAAGATTTACAGAGGCGACTTCAAGTGTCCGCCGTGGTTCTCTCCCGAAGCCCGTCGGCTAATCACGAAGCTTCTAGATCCTAATCCAGTGACCAGAGTCGGTATCGCGAAGATTACATCGTCCTCGTGGTTCAAGAAATCGGTACCCAAGACTCTGAGTACGAAGGAGGAGCAAGAACAAACAGAGGAGAATTTCACGAAATCAAAGCCACCGGCGGAAACATTGAACGCGTTCCACATAATATCTCTATCGGAAGGTTTTGATCTGTCGCCGTTGTTCGAGGAGAAGAAAAGGGAGGAGAAAGAGGAGATGAGATTCGCGACTTCGTCGCCGGCGAGCAGTGTGATATCGAAGCTTGAGGAAGTGGCGAAGTCAGTGAAGTTCGATGTGAAGAAGAGCGAATCGTGGGTTCGATTGCAGGGGCAAGAGAAAGGGAGAAAGGGGAAACTGACGATCGCGGCGGATATCTTTGCGATGACGCCGTCGTTTGTGGTGGTGGAGGTGAAGAAGGACAACGGAGATACTTTGGAGTATAATCAGTTCTGCAGGAAGGAGCTCCGGCCGGCATTGAAGGACATTGTTTGGACTTCTCCGACGGGAAACTCGACCCCAGCTTGA 1419 50.88 MKFASLIQFELIGRSKTFIIGGRNCHRKHVEDGSNPAADMADKGRDGGHSSLLDGKYELGRLLGHGTFAKVYHARNLRTGKSVAMKVVGKEKIIKVGMTEQIKREISVMKMVKHPNIVELHEVMASKSKIYFAMEFVRGGELFSKIAKGRLREDVARVYFQQLISAIDFCHSRGVYHRDLKPENLLLDEDGNLKVTDFGLTAFSEHLKQDGLLHTTCGTPAYVAPEVIGKQGYDGAKADLWSCGVILYVLLAGYLPFQDDNMVAMYRKIYRGDFKCPPWFSPEARRLITKLLDPNPVTRVGIAKITSSSWFKKSVPKTLSTKEEQEQTEENFTKSKPPAETLNAFHIISLSEGFDLSPLFEEKKREEKEEMRFATSSPASSVISKLEEVAKSVKFDVKKSESWVRLQGQEKGRKGKLTIAADIFAMTPSFVVVEVKKDNGDTLEYNQFCRKELRPALKDIVWTSPTGNSTPA 472
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 31599010 31600543 + ClCG02G017100.2 Cla02g01676 267802
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g01676 472 ProSitePatterns Serine/Threonine protein kinases active-site signature. 175 187 IPR008271 GO:0004672|GO:0006468
Cla02g01676 472 Gene3D Transferase(Phosphotransferase) domain 1 139 337 - -
Cla02g01676 472 SMART serkin_6 57 311 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla02g01676 472 PANTHER - 49 469 - -
Cla02g01676 472 SUPERFAMILY Protein kinase-like (PK-like) 54 330 IPR011009 -
Cla02g01676 472 Pfam Protein kinase domain 57 311 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla02g01676 472 ProSiteProfiles NAF domain profile. 337 361 IPR018451 GO:0007165
Cla02g01676 472 ProSitePatterns Protein kinases ATP-binding region signature. 63 90 IPR017441 GO:0005524
Cla02g01676 472 Pfam NAF domain 340 399 IPR004041 GO:0007165
Cla02g01676 472 CDD STKc_SnRK3 56 310 - -
Cla02g01676 472 CDD CIPK_C 343 458 - -
Cla02g01676 472 ProSiteProfiles Protein kinase domain profile. 57 311 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla02g01676 472 Gene3D Phosphorylase Kinase; domain 1 31 138 - -
Cla02g01676 472 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 49 469 - -
Cla02g01676 472 Gene3D Kinase associated domain 1, KA1 338 463 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g02325 Cla-Chr1:37043416 Cla02g01676 Cla-Chr2:31599010 0 dispersed
Cla02g01676 Cla-Chr2:31599010 Cla03g00713 Cla-Chr3:8613905 0 dispersed
Cla02g01676 Cla-Chr2:31599010 Cla06g01224 Cla-Chr6:25477279 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80359 PF00069 Pkinase 1.00E-72 CL0016 Cla PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g01676 - K07198 csv:101208458 830.476