Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g01677 ATGAAGCTCACGCGCTTCATCTTCCTCTATAAAACCTCAGTATTCCCACCTTCCATGGCTTCCTCACTCACTTCTTTGTTCATTTCTCGCCGGACTGATATGAGACTCACCAACTCCCTCCCGGATCTCCATAGCCACCGCCATAACCACCCTACGGAGACCGAAGCCTCTCAACGTCATCACCACCAACTTCAGACCTCCCTCTTCCATCCCTCTTCCTTCTCTTCCGACGATTTCCTCGACCAAATCCTCTCCGCCGCCCCTCCTCCCTGGGAACTCCCCGCCGGCCTCCCAAATCCTCACTCCGACCTCCCTCCCCAACCACTTCCGTCATCTAATCCCGACAATGTCGCGTTTCAGATCGGCGACACAACTCCGGCGGCCAAAATGGCCATGGCCTTGCTTCAACAGCAGTTGCTCATGTCGAGAGGAATCACCGCTGCCGATGATTCCGGTCTCCTTCCAATGCCTGGTAACGATGTCGTTGAAATAGAAGGCTCTTCGTCTTTCAAATGCCCTAATCCGATTGATCACGGTTCCATCATTCCCTCTCTCTTCAACGAATTCGCCGGATTTCTGAACGCCTCCGGTTCCGGCCATAACCAGAATCAATCTCAGGCAATAATTCGATTCGATCGCAAAAATAACCTCACCATTTTTTTAAACTTCAATTCACAAATCTGCAGGGGAACTCAAACTCTCAGAAACAGAACTTCGGAGCTCCGGTATCAGTCAGCAGTCCATCTCCGGCAGGTCCTAACTCCGGCGTTGGTGCTGCACCACCGGCTCAGCCGCGGCAGAGAGTCAGAGCTCGGAGAGGACAAGCCACAGATCCTCATATTACGAAGAGAGCGAATTGCGGAGAGAATGAAAGCACTACAAGAACTGGTTCCCAACGCCAACAAGACAGACAAGGCATCAATGCTGGATGAGATCATAGACTATGTAAAGTTTCTCCAGCTTCAAGTCAAAGTTCTGAGTGTCAGCAGGTTGGGCGGTGCCACTGCAGCCATGCCTTCCCTTCAACCTGATCTTTCCACTGAGGGTGGCACCGAGTGCAACCAGTCCAACGGAACCGGTGGGGCCGGCGGACAGGCTTCAGCCGAAGCTCCGTCGAGTAACGACGCGATGACGGTGACGGAACATCAGGTGGTGAAGTTAATGGAGGAGGACATGGGCTCCGCCATGCAGTACTTACAAGGCAAAGGCCTTTGCCTCATGCCCATCTCTCTCGCCACCGCTATCTCCGCCGCCACGTGTCACAGCCGCCCAACCACGACGTCGAAGGTCAGAGGAGATGCTCCCACCTCTCCTAGTCTGTCGGCGTTGACCGTTCAGTCAACTACCTTGGGTAACGGCACGGTGGACAGAACCGTTTCACGGCCGCCGTGA 1392 54.17 MKLTRFIFLYKTSVFPPSMASSLTSLFISRRTDMRLTNSLPDLHSHRHNHPTETEASQRHHHQLQTSLFHPSSFSSDDFLDQILSAAPPPWELPAGLPNPHSDLPPQPLPSSNPDNVAFQIGDTTPAAKMAMALLQQQLLMSRGITAADDSGLLPMPGNDVVEIEGSSSFKCPNPIDHGSIIPSLFNEFAGFLNASGSGHNQNQSQAIIRFDRKNNLTIFLNFNSQICRGTQTLRNRTSELRYQSAVHLRQVLTPALVLHHRLSRGRESELGEDKPQILILRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSVSRLGGATAAMPSLQPDLSTEGGTECNQSNGTGGAGGQASAEAPSSNDAMTVTEHQVVKLMEEDMGSAMQYLQGKGLCLMPISLATAISAATCHSRPTTTSKVRGDAPTSPSLSALTVQSTTLGNGTVDRTVSRPP 463
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 31633744 31639631 - ClCG02G017110.1 Cla02g01677 267803
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g01677 463 PANTHER TRANSCRIPTION FACTOR BHLH69 282 428 - -
Cla02g01677 463 CDD bHLH_AtbHLH_like 282 327 IPR045239 -
Cla02g01677 463 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 270 319 IPR011598 GO:0046983
Cla02g01677 463 MobiDBLite consensus disorder prediction 40 64 - -
Cla02g01677 463 Pfam Helix-loop-helix DNA-binding domain 282 320 IPR011598 GO:0046983
Cla02g01677 463 Gene3D - 281 328 IPR036638 GO:0046983
Cla02g01677 463 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 70 207 - -
Cla02g01677 463 MobiDBLite consensus disorder prediction 340 377 - -
Cla02g01677 463 MobiDBLite consensus disorder prediction 423 463 - -
Cla02g01677 463 MobiDBLite consensus disorder prediction 339 377 - -
Cla02g01677 463 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 282 428 - -
Cla02g01677 463 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 282 328 IPR036638 GO:0046983
Cla02g01677 463 PANTHER TRANSCRIPTION FACTOR BHLH69 70 207 - -
Cla02g01677 463 SMART finulus 281 325 IPR011598 GO:0046983
Cla02g01677 463 MobiDBLite consensus disorder prediction 40 60 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g01677 Cla-Chr2:31633744 Cla03g01576 Cla-Chr3:31538515 9.01E-42 dispersed
Cla02g01677 Cla-Chr2:31633744 Cla06g01221 Cla-Chr6:25394004 3.26E-86 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60682 PF00010 HLH 4.00E-06 No_clan Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g01677 - - csv:101222794 550.821