Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g01678 CAAATTCAGCCACATACTTCCACCAATCTTTCTCTTGTTTTTATCTCTTTCAATTTTTTCTTTCTTTCTTTCTCAAGAATCTCCTCAAAATTCCCCATTTCCCCATTTCCCCAATTCCTTTTCTCATCAATTTCCATGGCGGGTAATGGGGTTTTTGCAGAGATTCTCGATGGTGAAGTCTACAAATACTATTCCGAAGGTGAGTGGAAGAAATCCTCCTCCGGGAAAACCGTTGCCATTATCAACCCCACTACAAGGAAGACTCAGTACAGAGTTCAAGCTTGCAACCAAGAGGAGGTTAATAAAGTGATGGAAATAGCCAAAACTGCTCAAAAATCATGGGCAAAGACTCCATTGTGGAAGAGAGCAGAGCTTCTTCATAAAGCTGCTGCAATTTTGAAAGAACACAAAGCTCCCATTGCTGAGTGTTTGGTGAAGGAAATTGCAAAACCAGCCAAAGATGCAGTGACTGAGCTTTTACTGTGGAAATGTGAGGTTGTGGTAATGGGTTTGAATGGTGCGAAGGTCGTGAGGTCTGGGGATCTTGTTTCATATTGTGCTGAAGAAGGTGTTAGGATCTTGGGAGAGGGGAAGTTCTTGGTTTCTGACAGTTTCCCTGGAAATGAAAGGACCAAATATTGCCTTACTTCCAAGATCCCTCTTGGTGTGATTTTAGCCATTCCTCCATTCAACTATCCTGTCAATTTGGCTGTTTCAAAAATTGCCCCGGCTTTGATTGCTGGAAATTCTATCGTCCTCAAGCCTCCAACTCAGGGAGCTGTTTCTGCTCTCCACATGGTACATTGCTTCCACCTAGCTGGTTTTCCTAAAGGCCTCATTAGTTGTGTCACTGGAAAAGGTTCCGAGATCGGTGATTTCCTCACTATGCATCCGGGTGTCGACTGTATAAGCTTTACCGGTGGGGATACTGGTATTGCAATTTCGAAGAAGGCAGGCATGATACCTCTTCAGATGGAACTGGGAGGCAAAGACGCCTGCATTGTGCTCGAGGATGCAGATCTCGATTTAGTTGCTGCTAACATCATAAAGGGAGGCTTTTCTTACAGTGGCCAAAGGTGTACTGCCGTAAAGGTTGTTTTGGTAATGGAGTCCGTTGCAGATGCTTTGGTCGAGAAAGTAAAGGCACGGGTGGCTAAATTAACCGTTGGTGCTCCTGAAGACGACTCAGACATTACTCCAGTTGTGACTGAGTCGTCAGCGAATTTCATTGAAGGGTTGGTAATGGATGCAAAGGAAAAGGGAGCAACATTTTGCCAAGAGTACAGAAGAGAGGGCAACCTCATTTGGCCCTTGTTGTTAGATAATGTTAGGCCTGATATGAGGATTGCATGGGAGGAACCTTTTGGACCAGTCTTGCCAGTCATTAGGATCAGTTCTATTGAAGAAGGAATCCACCATTGTAATGCTAGCAACTTTGGACTTCAGGGATGTGTATTCACAAAGGACATCAACAAGGCGATATTGATAAGTGACGCAATGGAAACTGGAACAGTTCAAATCAACTCTGCACCTGCTCGAGGACCTGATCATTTCCCATTCCAGGGAATCAAGGACAGTGGAATTGGTTCTCAAGGTGTTACCAACAGCATCAACATGATGACTAAAGTGAAGACCACAGTTATCAACTTGCCAACACCTTCCTACACCATGGGTTAG 1677 44.31 QIQPHTSTNLSLVFISFNFFFLSFSRISSKFPISPFPQFLFSSISMAGNGVFAEILDGEVYKYYSEGEWKKSSSGKTVAIINPTTRKTQYRVQACNQEEVNKVMEIAKTAQKSWAKTPLWKRAELLHKAAAILKEHKAPIAECLVKEIAKPAKDAVTELLLWKCEVVVMGLNGAKVVRSGDLVSYCAEEGVRILGEGKFLVSDSFPGNERTKYCLTSKIPLGVILAIPPFNYPVNLAVSKIAPALIAGNSIVLKPPTQGAVSALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPGVDCISFTGGDTGIAISKKAGMIPLQMELGGKDACIVLEDADLDLVAANIIKGGFSYSGQRCTAVKVVLVMESVADALVEKVKARVAKLTVGAPEDDSDITPVVTESSANFIEGLVMDAKEKGATFCQEYRREGNLIWPLLLDNVRPDMRIAWEEPFGPVLPVIRISSIEEGIHHCNASNFGLQGCVFTKDINKAILISDAMETGTVQINSAPARGPDHFPFQGIKDSGIGSQGVTNSINMMTKVKTTVINLPTPSYTMG 558
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 31646273 31650417 - ClCG02G017120.1 Cla02g01678 267804

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g01678 558 PANTHER ALDEHYDE DEHYDROGENASE 46 558 - -
Cla02g01678 558 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 329 553 IPR016163 GO:0016620
Cla02g01678 558 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 353 364 IPR016160 GO:0016491
Cla02g01678 558 CDD ALDH_F11_NP-GAPDH 60 549 - -
Cla02g01678 558 SUPERFAMILY ALDH-like 59 549 IPR016161 GO:0016491
Cla02g01678 558 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 325 332 IPR029510 GO:0016491
Cla02g01678 558 Pfam Aldehyde dehydrogenase family 69 545 IPR015590 GO:0016491
Cla02g01678 558 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 55 328 IPR016162 GO:0016491
Cla02g01678 558 PANTHER NADP-DEPENDENT GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE 46 558 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g01678 K00131 gapN; glyceraldehyde-3-phosphate dehydrogenase (NADP+) [EC:1.2.1.9] - csv:101208699 950.658
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g01678 Cla-Chr2:31646273 Cla06g01654 Cla-Chr6:30056618 3.16E-57 dispersed
Cla02g01678 Cla-Chr2:31646273 Cla02g01637 Cla-Chr2:31170876 2.63E-49 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cla06g01016 . 1 505 Aldehyde Dehydrogenase Gene Family AT3G24503 69.4 1.6e-210 729.2
Cla06g01654 . 66 550 Aldehyde Dehydrogenase Gene Family AT3G24503 54.1 2.3e-153 539.3
Cla02g01637 . 245 714 Aldehyde Dehydrogenase Gene Family AT3G24503 52.9 2.6e-149 525.8
Cla06g01654 . 1 550 Aldehyde Dehydrogenase Gene Family AT3G48000 76.2 2.2e-250 861.7
Cla02g01637 . 211 714 Aldehyde Dehydrogenase Gene Family AT3G48000 72.9 5.1e-231 797.3
Cla06g01016 . 18 505 Aldehyde Dehydrogenase Gene Family AT3G48000 55.3 3.2e-161 565.5
Cla06g01654 . 1 394 Aldehyde Dehydrogenase Gene Family AT1G23800 72.3 6.2e-165 577.4
Cla02g01637 . 225 564 Aldehyde Dehydrogenase Gene Family AT1G23800 75.6 1.8e-156 549.3
Cla06g01016 . 18 349 Aldehyde Dehydrogenase Gene Family AT1G23800 54.5 1.5e-102 370.2
Cla11g01542 . 613 1071 Aldehyde Dehydrogenase Gene Family AT4G34240 60.3 2.4e-164 575.9
Cla11g01542 . 678 1069 Aldehyde Dehydrogenase Gene Family AT1G44170 68.1 1.3e-162 569.7
Cla02g02255 . 62 455 Aldehyde Dehydrogenase Gene Family AT1G44170 50.3 1.4e-111 400.2
Cla07g00849 . 21 499 Aldehyde Dehydrogenase Gene Family AT4G36250 63.0 7.1e-184 640.6
Cla02g02255 . 2 457 Aldehyde Dehydrogenase Gene Family AT4G36250 54.9 5.5e-152 534.6
Cla02g01832 . 46 614 Aldehyde Dehydrogenase Gene Family AT1G79440 55.3 3.8e-162 568.5
Cla09g01595 . 5 505 Aldehyde Dehydrogenase Gene Family AT2G14170 75.7 1.6e-222 769.2
Cla01g01786 . 262 696 Aldehyde Dehydrogenase Gene Family AT2G14170 68.3 2.4e-181 632.5
Cla06g01634 . 1 507 Aldehyde Dehydrogenase Gene Family AT1G74920 80.9 7.7e-250 859.8
Cla06g01634 . 1 509 Aldehyde Dehydrogenase Gene Family AT3G48170 80.7 1.1e-251 865.9
Cla02g01678 . 46 558 Aldehyde Dehydrogenase Gene Family AT2G24270 87.7 6.5e-265 909.8
Cla01g01428 . 21 576 Aldehyde Dehydrogenase Gene Family AT5G62530 75.0 4.3e-257 884.0
Cla06g00431 . 1 587 Aldehyde Dehydrogenase Gene Family AT3G66658 76.7 1.2e-276 949.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005298 1 2 1 1 1 1 2 1 1 1 1 1 1 1 1 2 1 3 2 1 1 1 1 1 1 1 1 3 2 2 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla02g01678 Cla_Chr02 FPKM 8.677389 8.987587 9.129253 12.841979 20.997335 21.978981 18.787373 7.380258 5.352494 5.529162