Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cla02g01687 | ATGTGTGTGACGGATGCAGAGCAGGTTGGGACTGAGAGACCAACTTCTGGGGTTAATAATACCAAGCCATGGCCAATACATTGTGAATTTTTGCAGAATCAGATGGGGAATCCTGATAAGGAGCCTGCTCTAACTGGAACTAGCGACCGAACTCGCTCTGGGAATTCTTTTCCTCTAGAAAGCATATCTGAGGATGCTGCCGTTATAGACAGGAAAGAGAACCCATCTACTTTTGTTCCAGCTCTTAGATCAGGAGAATGGTCTGACATCGGAAAGCGTCCTTATATGGAGGACACTCATGTATGCATTCATGACATGGCTAAGAAGTTTGGCTGTAGCTTTCTTAATGAGGAAGCTGTCTCCTTCTATGGTAGTAAAACTGTTGTTCCTGAGGTATTTGACGGTCATGGAGGAAAAGCCGCTGCACAGTTTGTTCGTGACCACTTGCCGAGAGTCATTGTTGAAGATTCTGACTTTCCTTTAGAACTTGAAAAGGTCGTCACAAGGTCATTTATGGAGACTGATGCAGCTTTTGCTAGATCTTGCACTCTTGAAACATCTCTATCTTCTGGCACAACTGCCCTGACTGCAATGATATTTGGAAGGTCTTTGCTTGTAGCAAATGCTGGTGATTGCCGAGCAGTACTGTCAAGACAAGGATGTGCAGTAGAAATGTCCAAAGACCACAGGCCATGCTGCACAAAAGAAAGAAAGCGAATCGAGGCCTTGGGCGGATTCATTGATGATGATTACCTAAACGGCCTGCTCGGTGTTACACGTGCGATAGGAGATTGGCATCTTGAAGGAATGAAGGAAATGAGTGAAAGAGGTGGACCATTAAGTGCAGAACCTGAACTTAGATTAATGACATTGACAAAGGAAGACGAGTTCTTGATCATAGGTAGTGATGGAATATGGGACGTCTTCACAAGTCAAAACGCTATCGATTTTGCTCGGAGGAGGCTCCAAGAGCACAATGATGTGAAAATTTGCTGCAAGGAAATAGTGGAGGAAGCCATAAAGAGAGGAGCAACAGACAATTTAACAGTAGTGTTGGTTAGCTTTCATTTGGAACCTCCTCCACCTGTAGTTTTTCAAAGGCCAAGATTTAGAAGAAGCATTTCTGCTGAGGGACTTCAGAACCTCAAATTTCTTCTAGAAGGATAG | 1167 | 44.04 | MCVTDAEQVGTERPTSGVNNTKPWPIHCEFLQNQMGNPDKEPALTGTSDRTRSGNSFPLESISEDAAVIDRKENPSTFVPALRSGEWSDIGKRPYMEDTHVCIHDMAKKFGCSFLNEEAVSFYGSKTVVPEVFDGHGGKAAAQFVRDHLPRVIVEDSDFPLELEKVVTRSFMETDAAFARSCTLETSLSSGTTALTAMIFGRSLLVANAGDCRAVLSRQGCAVEMSKDHRPCCTKERKRIEALGGFIDDDYLNGLLGVTRAIGDWHLEGMKEMSERGGPLSAEPELRLMTLTKEDEFLIIGSDGIWDVFTSQNAIDFARRRLQEHNDVKICCKEIVEEAIKRGATDNLTVVLVSFHLEPPPPVVFQRPRFRRSISAEGLQNLKFLLEG | 388 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 2 | 31763415 | 31769040 | + | ClCG02G017220.2 | Cla02g01687 | 267813 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cla02g01687 | 388 | MobiDBLite | consensus disorder prediction | 35 | 58 | - | - | |
| Cla02g01687 | 388 | SMART | PP2C_4 | 73 | 353 | IPR001932 | - | |
| Cla02g01687 | 388 | CDD | PP2Cc | 83 | 355 | IPR001932 | - | |
| Cla02g01687 | 388 | Pfam | Protein phosphatase 2C | 96 | 347 | IPR001932 | - | |
| Cla02g01687 | 388 | Gene3D | - | 66 | 358 | IPR036457 | - | |
| Cla02g01687 | 388 | SUPERFAMILY | PP2C-like | 73 | 356 | IPR036457 | - | |
| Cla02g01687 | 388 | ProSiteProfiles | PPM-type phosphatase domain profile. | 83 | 355 | IPR001932 | - | |
| Cla02g01687 | 388 | MobiDBLite | consensus disorder prediction | 1 | 23 | - | - | |
| Cla02g01687 | 388 | PANTHER | PROTEIN PHOSPHATASE 2C | 1 | 376 | IPR015655 | GO:0004722|GO:0006470 | |
| Cla02g01687 | 388 | PANTHER | PROTEIN PHOSPHATASE 2C 27-RELATED | 1 | 376 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cla02g01687 | Cla-Chr2:31763415 | Cla11g01835 | Cla-Chr11:31986111 | 6.44E-108 | dispersed | |
| Cla02g01687 | Cla-Chr2:31763415 | Cla09g00444 | Cla-Chr9:4222654 | 3.01E-84 | transposed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 60684 | PF00481 | PP2C | 3.10E-63 | CL0238 | Cla | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cla02g01687 | K14803 | - | csv:101210349 | 718.383 |