Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g01697 ATGGGCTCAAACTATCTACGCTTGCTTTCTTACACTAAACAATTGAGCTTTTATGCCAACCATGGCAACCACGAGCAGGCTCTTTCTCTTTTCCACCACATGCAGGCCTCACTAGCCCTTGGTTTAGACGCCCACGTCTTCTCTATCGTTCTCAAGTCCTGCACCGCCATCCGACGACCCCATTTGGGCACCGCCATCCATGCCCACTCTGCTAAATCCTCTCTGCTTTCAAGCCCATTTGTTGCTTGTGCCCTAGTTGACATGTATGGAAAATCCTTGTCTGTTTCACTTGCACGAAAGCTGTTCGATGAAATTCCCCATAGAAGTGTCGTCGTGTGGAATGCCATGTTATCACTATACGCGCATTCAAACATGTTACTTGATGCTTTGCGGTTATTTGAAGCTATGGATGTGCCACCAAATACTTCGTCCTTCAATCCAATAATTGCAGGGTTGTCGGACTTGAAAGATGGATTCAAGGCCATTGCTTTCTATAGGCAAATGCAACAATGTGGGTTGAAGCCTAATTTAATTACCCTTCTTGCTTTATTACCTGCAAGTGTTGGAGTTGCGGCTTTGGACTTGATTAAACAAATTCATGGTTATGCCATGAGAAGTGATTTGGGTTGTCATCCCCAGTTAAGCAGTGGCCTTGTTGAGGCCTATGGACGATGCGGATGTCTCTCTTATGCACACAATGTGTTCGATAATATGACGGAAAGAGATGTAGTTGCATGGAGCAGTTTAATATCAGCACACGCTCTTCACGGGGAAGCCAGAACTGCCTTAAACATCTTTCAACAAATGGAATTGGGTAAAGTGCAGCCTGATGAGATTACATTTATGGGGGTGTTGAAGGCTTGTAGTCACGTGGGGTTAGCTGATGAAGCATTGGACTATTTTAGTCGTATGCAGAGAGATTATGGTCTACAAGCAAGCAGTGATCATTATTCTTGTCTAGTTGATGTATTGAGCAGAGCAGGGAGATTATACGAGGCATATGACATTATTCGTGAGATGCCAGTGAGGGCGACGGCTAAAGCTTGGGGCGCTCTTCTTGGGGCTTGTCGAATTTATGGAGAGTTAGAACTGGGGGAGATTGCAGGGAAGGCTTTGTTTGAAATAGAGCCTGAGAATGCTGCCAATTATGTGCTGTTGGCTAAAATGTATGCAAGTGTAGGGAGGCATGAGGATGCTCAAAGAATGAGAAGGGAAATGAAAGAGAGGAGAGTTAAGGTAGTACCTGGAAGTAGCTGGATAAATCTCAAAATATTTGAATTTGGTTTGAAGGCTTTTACAATGAGGTGGAATTCTTTCTACACCAAAGCCTCTAAGGCTTTTCATGATCATCCTTCCATCTCCAAGCTTCTCATTGTTTTCACTATCAGGGATTGCAATCAGGTTGCTCATATCCTTGGGACGGTGAAAGCCTGGTTTCCCCTTTATGGATGTAATTGCGTTCATAATGGAGAATATGCATATAACATTGTTATCATCTGCAGTGGAGGTGGACTGGTAGCAGCTACTAATGGCAGATCTCGTTATCATTCTGCATATGCTGATGCAGGCCAACAAGATGGTGACTGCAAGAAGAAGAAAGTGGTGGTGCTTGGAACAGGATGGGCTGGGACCAGTTTTTTGAAGAATCTCAAGAGCTCGTCTTATGATGTTCATGTTATTTCTCCTCATAATTACTTTGCTTTCACCCCTTTGCTACCTAGTGTCACCTGTGGGACGGTTGAAGCACGCAGCATTGTCGAACCGATTCGTAGTATTACAAGGAAGAAAGGTCTGAATATTGAATTTAGGGAAGCTGAGTGCTATAAGATTGATGCAGAGAAGAAAAAGGTGTTCTGTCGATCAAGTCAAGACACAAATTTGGGTGGCAGAGAAGAATTTTCTGTTGACTATGACTATCTGATTATAGCTATGGGAGCTAAATCCAACACTTTCAACACACCTGGAGTTGAGGAAAATGCTCACTTCTTGAAGGGAGTGGAAGATGCTCAGAGGATTCGTCAGACCGTAATCGATTGTTTCGAGCGAGCCAGCCTTCCAAATCTAAGTGAAGAAGAGAAGAAGAGAACTCTTCACTTTGTAATAGTTGGAGGTGGCCCAACAGGGGTGGAATTTGCTGCAGAGCTTCATGACTTTGCAGTAGAGGATTTAGCAGGGCTGTATCCTTCATTGAAAGACTATGTGAAAATAACCCTGTTAGAGGCAGGAGATAATATTTTGAACATGTTTGACAAGAGGATTACCGCCTTTGCTGAAGAAAAATTTCAAAGAGATGGGATTGAAGTAAAAACTGGTTCCATGGTTGTAAAAGTAACTGATAAGGAAATCTCCACAAAAGAAAGAGCAACCGGTGAATTTGTGTCTGTTCCTTATGGAATGGTTGTCTGGTCTACCGGCATCGGCCCTCGTCCTCAAGTTGTTGATTTCATGAAGCAGATTGGTCAGACTAACAGAAGAGCTTTGGCAACTGATGAGTGGCTAAGGGTTGAAGGATGTGATGGTGTCTATGCTCTTGGTGATTGTGCCACTGTAAATCAAAGAAGAGTCATGGAAGATATTGCAGTAATATTCTGCAAGGCAGACAAGGACAAGTCAGGAACTTTAGCCCTGCAAGAGTTTCAAGAAGTGGTAGATGATATTTGCGAGAGGTACCCTCAAGTAGAGATCTATCTGAAGAAGAAGCAGATGAAGAACTTTGCTGCTTTGTTGAAGAAGACGCAATCCGACGCACAGAAACAGTCGACCGAACTGGATATTGAAAGCTTTAAGTCTTTACTTTCTGAAGTCGATTCTCAGATGAAAAATCTCCCTGCTACTGCTCAAGTTGCTGCTCAACAAGGTGAATATCTTGCAAGCTGCTTCAACCGGATGGAGCAGTGTGAAAAGTACCCTGAAGGCCCTCTCCGATTTCGAGGGACGGGACGCCACAGGTTTCACCCTTTCAGGTATAAGCATTTTGGGCAGTTTGCTCCTCTTGGGGGAGAACAAACTGCAGCTCAACTTCCTGGAGATTGGATCTCAATTGGTCATAGCACCCAGTGGCTTTGGTACTCTGTGTATGCCAGCAAGCTAGTAAGTTGGCGCACAAGGATTCTGGTCATGTCAGATTGGGGTAGAAGATTCATATTTGGCAGGGATTCAAGCAGAATCTGA 3171 43.96 MGSNYLRLLSYTKQLSFYANHGNHEQALSLFHHMQASLALGLDAHVFSIVLKSCTAIRRPHLGTAIHAHSAKSSLLSSPFVACALVDMYGKSLSVSLARKLFDEIPHRSVVVWNAMLSLYAHSNMLLDALRLFEAMDVPPNTSSFNPIIAGLSDLKDGFKAIAFYRQMQQCGLKPNLITLLALLPASVGVAALDLIKQIHGYAMRSDLGCHPQLSSGLVEAYGRCGCLSYAHNVFDNMTERDVVAWSSLISAHALHGEARTALNIFQQMELGKVQPDEITFMGVLKACSHVGLADEALDYFSRMQRDYGLQASSDHYSCLVDVLSRAGRLYEAYDIIREMPVRATAKAWGALLGACRIYGELELGEIAGKALFEIEPENAANYVLLAKMYASVGRHEDAQRMRREMKERRVKVVPGSSWINLKIFEFGLKAFTMRWNSFYTKASKAFHDHPSISKLLIVFTIRDCNQVAHILGTVKAWFPLYGCNCVHNGEYAYNIVIICSGGGLVAATNGRSRYHSAYADAGQQDGDCKKKKVVVLGTGWAGTSFLKNLKSSSYDVHVISPHNYFAFTPLLPSVTCGTVEARSIVEPIRSITRKKGLNIEFREAECYKIDAEKKKVFCRSSQDTNLGGREEFSVDYDYLIIAMGAKSNTFNTPGVEENAHFLKGVEDAQRIRQTVIDCFERASLPNLSEEEKKRTLHFVIVGGGPTGVEFAAELHDFAVEDLAGLYPSLKDYVKITLLEAGDNILNMFDKRITAFAEEKFQRDGIEVKTGSMVVKVTDKEISTKERATGEFVSVPYGMVVWSTGIGPRPQVVDFMKQIGQTNRRALATDEWLRVEGCDGVYALGDCATVNQRRVMEDIAVIFCKADKDKSGTLALQEFQEVVDDICERYPQVEIYLKKKQMKNFAALLKKTQSDAQKQSTELDIESFKSLLSEVDSQMKNLPATAQVAAQQGEYLASCFNRMEQCEKYPEGPLRFRGTGRHRFHPFRYKHFGQFAPLGGEQTAAQLPGDWISIGHSTQWLWYSVYASKLVSWRTRILVMSDWGRRFIFGRDSSRI 1056
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 31839586 31846434 - ClCG02G017330.2 Cla02g01697 267823
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g01697 1056 TIGRFAM PPR: pentatricopeptide repeat domain 244 278 IPR002885 -
Cla02g01697 1056 TIGRFAM PPR: pentatricopeptide repeat domain 144 176 IPR002885 -
Cla02g01697 1056 ProSiteProfiles EF-hand calcium-binding domain profile. 854 889 IPR002048 GO:0005509
Cla02g01697 1056 Pfam PPR repeat 17 35 IPR002885 -
Cla02g01697 1056 Pfam PPR repeat 111 136 IPR002885 -
Cla02g01697 1056 Pfam PPR repeat 144 173 IPR002885 -
Cla02g01697 1056 Pfam PPR repeat 316 341 IPR002885 -
Cla02g01697 1056 Pfam E motif 359 421 IPR046848 -
Cla02g01697 1056 PANTHER - 470 1056 - -
Cla02g01697 1056 PRINTS FAD-dependent pyridine nucleotide reductase signature 534 553 - -
Cla02g01697 1056 PRINTS FAD-dependent pyridine nucleotide reductase signature 637 655 - -
Cla02g01697 1056 PRINTS FAD-dependent pyridine nucleotide reductase signature 698 716 - -
Cla02g01697 1056 PRINTS FAD-dependent pyridine nucleotide reductase signature 826 848 - -
Cla02g01697 1056 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 242 276 IPR002885 -
Cla02g01697 1056 Gene3D - 903 1055 - -
Cla02g01697 1056 Gene3D - 524 902 - -
Cla02g01697 1056 PANTHER NADH DEHYDROGENASE 470 1056 IPR045024 GO:0003954|GO:0006116
Cla02g01697 1056 Gene3D Tetratricopeptide repeat domain 9 213 IPR011990 GO:0005515
Cla02g01697 1056 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 141 175 IPR002885 -
Cla02g01697 1056 SUPERFAMILY FAD/NAD(P)-binding domain 531 750 IPR036188 -
Cla02g01697 1056 ProSitePatterns EF-hand calcium-binding domain. 867 879 IPR018247 -
Cla02g01697 1056 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 379 413 IPR002885 -
Cla02g01697 1056 Pfam Pyridine nucleotide-disulphide oxidoreductase 532 857 IPR023753 GO:0016491
Cla02g01697 1056 Pfam PPR repeat family 241 289 IPR002885 -
Cla02g01697 1056 SUPERFAMILY FAD/NAD(P)-binding domain 692 851 IPR036188 -
Cla02g01697 1056 Gene3D Tetratricopeptide repeat domain 214 422 IPR011990 GO:0005515
Cla02g01697 1056 SUPERFAMILY EF-hand 812 933 IPR011992 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g01697 Cla-Chr2:31839586 Cla03g00519 Cla-Chr3:5738128 0 dispersed
Cla02g01903 Cla-Chr2:34194623 Cla02g01697 Cla-Chr2:31839586 2.60E-14 dispersed
Cla04g00197 Cla-Chr4:6382582 Cla02g01697 Cla-Chr2:31839586 1.10E-10 dispersed
Cla10g01822 Cla-Chr10:34106827 Cla02g01697 Cla-Chr2:31839586 1.03E-06 dispersed
Cla05g02229 Cla-Chr5:33948644 Cla02g01697 Cla-Chr2:31839586 3.58E-07 transposed
Cla02g00132 Cla-Chr2:1458716 Cla02g01697 Cla-Chr2:31839586 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g01697 K03885 - csv:101209855 1105.12