Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g01720 ATGCAGCTCCTCCTCCGCCGCCGCAGTTTTCGGCTCACTAGAGCTTTGTTCTGTGCCGCGGCTGTGCTTGAGTGGTTCACGGCGGCGGCTCAGCTCCAACACCGTGTACCGAATCTACATTGGCTTCCAGCCACCGCCACGTGGTACGGGAGTCCCGAGGGAGACGGTAGCGACGGTGGAGCATGTGGGTATGGTAATTTAGTGGATGTCAAGCCTCTAAAGGCCAGAGTTGGGGCTGTGAGTCCAGTTTTGTTCAGAAATGGTGAAGGGTGTGGAGCCTGTTACAAAGTGAAGTGTTTAGACCAGAACATTTGCTCTAGACGAGCAGTGACTATAATCGTCACCGATGAGTGCCCCGGTGGGTATTGTTCCAATGGCAATACTCACTTCGATCTCAGCGGCGCCGCTTTTGGCCGCATGGCCATCGCCGGCGAAGGTGGGCAGCTCAGAAACCGAGGCGAAATCCCAGTAATTTACCGACGAACTCCGTGTAAGTACCCAGGCAAGAACATTGCCTTCCATGTCAATGAAGGCTCGACAGATTACTGGCTCTCACTCTTAGTTGAATTCGAGGATGGAGATGGAGACATCGGTGCAATGCAAATAAAAGAAACAAATTCAGGGGAGTGGCTGGATATGAACCATCTATGGGGGGCAAATTGGTGCATAATTGGTGGGCCATTAAAGGGCCCATTCTCAGTGAGATTAACAACTTTATCTACAGGAAGAACCCTCTCAGCAAGGGATATAATCCCAAGGAATTGGTCTCCCAAAGCCACTTACACTTCCCGCCTTAATTTCTTCTCTTGA 810 51.36 MQLLLRRRSFRLTRALFCAAAVLEWFTAAAQLQHRVPNLHWLPATATWYGSPEGDGSDGGACGYGNLVDVKPLKARVGAVSPVLFRNGEGCGACYKVKCLDQNICSRRAVTIIVTDECPGGYCSNGNTHFDLSGAAFGRMAIAGEGGQLRNRGEIPVIYRRTPCKYPGKNIAFHVNEGSTDYWLSLLVEFEDGDGDIGAMQIKETNSGEWLDMNHLWGANWCIIGGPLKGPFSVRLTTLSTGRTLSARDIIPRNWSPKATYTSRLNFFS 269
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 32085352 32087239 - ClCG02G017560.1 Cla02g01720 267846
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g01720 269 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 59 169 IPR007112 -
Cla02g01720 269 Gene3D - 166 268 IPR036749 -
Cla02g01720 269 SMART dpbb_1 77 159 IPR007112 -
Cla02g01720 269 Gene3D - 27 165 IPR036908 -
Cla02g01720 269 PANTHER EXPANSIN-LIKE PROTEIN B1 17 268 - -
Cla02g01720 269 Pfam Expansin C-terminal domain 171 252 IPR007117 -
Cla02g01720 269 PANTHER EXPANSIN-B3 17 268 - -
Cla02g01720 269 SUPERFAMILY PHL pollen allergen 169 263 IPR036749 -
Cla02g01720 269 SUPERFAMILY Barwin-like endoglucanases 40 168 IPR036908 -
Cla02g01720 269 PRINTS Major pollen allergen Lol pI signature 79 90 IPR005795 GO:0005576|GO:0019953
Cla02g01720 269 PRINTS Major pollen allergen Lol pI signature 119 134 IPR005795 GO:0005576|GO:0019953
Cla02g01720 269 PRINTS Major pollen allergen Lol pI signature 141 156 IPR005795 GO:0005576|GO:0019953
Cla02g01720 269 PRINTS Major pollen allergen Lol pI signature 173 188 IPR005795 GO:0005576|GO:0019953
Cla02g01720 269 PRINTS Major pollen allergen Lol pI signature 189 204 IPR005795 GO:0005576|GO:0019953
Cla02g01720 269 PRINTS Major pollen allergen Lol pI signature 239 256 IPR005795 GO:0005576|GO:0019953
Cla02g01720 269 PRINTS Expansin/Lol pI family signature 40 55 IPR007118 GO:0005576
Cla02g01720 269 PRINTS Expansin/Lol pI family signature 58 76 IPR007118 GO:0005576
Cla02g01720 269 PRINTS Expansin/Lol pI family signature 81 99 IPR007118 GO:0005576
Cla02g01720 269 PRINTS Expansin/Lol pI family signature 152 168 IPR007118 GO:0005576
Cla02g01720 269 PRINTS Expansin/Lol pI family signature 210 224 IPR007118 GO:0005576
Cla02g01720 269 PRINTS Expansin/Lol pI family signature 249 263 IPR007118 GO:0005576
Cla02g01720 269 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 182 263 IPR007117 -
Cla02g01720 269 Pfam Lytic transglycolase 79 158 IPR009009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g01720 Cla-Chr2:32085352 Cla07g00284 Cla-Chr7:3123320 1.46E-151 dispersed
Cla03g01181 Cla-Chr3:24987389 Cla02g01720 Cla-Chr2:32085352 2.14E-30 transposed
Cla05g00028 Cla-Chr5:399180 Cla02g01720 Cla-Chr2:32085352 4.80E-77 transposed
Cla09g01175 Cla-Chr9:14172897 Cla02g01720 Cla-Chr2:32085352 9.47E-26 transposed
Cla09g01215 Cla-Chr9:15423308 Cla02g01720 Cla-Chr2:32085352 1.95E-33 transposed
Cla02g01720 Cla-Chr2:32085352 Cla07g00282 Cla-Chr7:3097409 3.21E-109 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g01720 K20628 - csv:101202998 510.76