Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g01746 ATGCTCCGATCCGCTCCTGGAATGGAGGATCAGCGAGATGATGTTGCACCATCAGAGCAAGGGCCTTCCAATGCTTCCTGGTGGTCTTCTGATTTTGAGGAGAAATTTGGATCTGTTTCTTTGGGCCCTCGGGAAGATATTGTAAGTGAAAAGGAAGAGATCATCAATTCTGACCAAGATGTGTTATTGTCGCCTCAGAGAGCTTCTCAAATTCTCTGGGGTACTGGAATGCTTTGTGAACCAATTCCAGATGGGTTCTATTCTGTTATTCCGGATAAAAGGCTGAAAGAGCGGTTTCACAGTATTCCTTCGCTGGATGAGCTTCGTGCTTTGGAGGCCGAAGGTTACAGAAACGATGTTATTCTTGTGGAGACAGAGAAAGATAAAAAACTTTCTATGCTGAAGCAACTGATCTTGACACTGGTTAAAGGATTGAGTTCAAATCCAGCTGCAATTATCAAGAAGATTGCTGGACTGGTTTCTGATTTTTATAAACGACCAATTTTAGAAAGTCCAGCAAAAGCTGCTCTAGAAGAAAACTCCCACTTGTTCGAGGATAGAGGCATTCAATTACTTGGACAAATAAAATTTGGTTCTTGCCGTCCAAGAGCTATCTTATTTAAGGCTCTGGCGGACACTGTAGGGCTTGAAAGCCGTCTCATGGTGGGCTTGCCTAATGAGGGGGCTATTGGGTGTGTGGACTCATACAAGCATATGTCTGTGACAGTTGTGTTGAATTCTGTGGAACTAGTTGTTGATCTGATGCGATTCCCTGGCCAGTTGTTACCTCGGTCAACTAAGGCAATTTTTATGACCCATATTTCCGCTGCTGGTGAAAGCGATTCTGCAGAAAACGATTCCTGTGATTCACCACTAGAACCTAATAGTCCTCTTTATGGTTTCTCAGAAAGAGTTGATCCTGACAGTGCTGAGAAAGATGAGAGCCTTCAATTCCACAGAAAATTTGAAGCAGCTTCAAATGCATATGGTCATTCATTGCGCAACATGATGTTGCGATCAAGTACAACACTTGACAGGAAACTGAGTTTATCACATAGTGAACCTAACATTGCAAATGCATTTTGGCGACGTAGTCGGAGAAAGGATATTGCTGAACAGCGGACTGCTAGTTCAAGTCCAGAGCATCCTTCATTTCGGGCGCGTGGCCGGTCGATGCTTAGTGGGGATAGGAAAGCCTTCAGAGATTTTTCTGATGATGTCTCTACTTCAAGATCAGATGGCGCTTCAACTTCAACTTCAGAAGCACGTCGATTAAGAAGAAGGAGCATCAGCATTACTCCAGAGATTGGTGATGATATCGTGAGGGCTGTACGAGCAATGAGTGAAACATTGAAGCAAAATCGTCTTTTGAGAGGGCAAGAAGATGACAGGTCGTTCTCCCACCCTTCAAATGAAAGAAATAGTAGTTCAGATGTTCAGAGAAATGATCAAGTGGGCTCTCAAAGAGCAATATCATTACCATCATCGCCACACGTGTATAGGGGTCAAACCTCTGATAGAATTGGGCATTCAGCATATCCGAATCATGAATTAGCCTCAAAATGGACTAAAGTTCTTGAATCTTTCTCCTTGAATGACAAACCACTATTACCTTACCCAGAGTGGAACATCGATTACTCAGAACTGACAGTTGGAATCCGTATTGGAATTGGGTTTTTTGGAGAAGTTTTTCGTGGCATTTGGAATGGAACAGATGTGGCAATCAAAGTTTTCCTAGAGCAAGATCTAACTCCTGAAAACATTGAAGACTTCTGTAACGAGATATCAATTCTTAGTCGTCTTCGACATCCTAATGTTATACTATTTCTGGGGGCATGCACAAAGCCGCCACGCTTATCAATGATCACTGAATACATGGAGATGGGTTCCTTGTATTCCTTGATCCATTTGAGTGGTCAGAAGAAAAAACTTAGCTGGCGGAGGAGACTGAAGATGTTGCGTGACATATGCAGGGGTTTGATGTGCATACACCGAATGAAAATAGCTCATCGGGACCTAAAAAGTGCAAATTGCCTAGTGAACAAGCACTGGACCGTCAAGATATGTGATTTTGGACTTTCAAGAATATTGACAGATGCTCCAGCAAGAGGGTCTCCATCTGCAGGAACTCCAGAATGGATGGCTCCTGAGCTCTTTCGAAATGAGCCCTTCACTGAAAAGTGTGATATTTTCAGCCTGGGGGTCATTATGTGGGAGCTATGCACGCTAAATAGACCATGGGAGGGTGTTCCACCGGAGCGGGTAGTTTATGCTGTTGGCACTGAGGGATCCCGCCTCGAGATTCCCGAAGGCCCGCTTGGCAGACTTATATCAGATTGTTGGGCGGAACCAAATGAACGGCCAAGCTGCGAAGAGATTCTCTCACGCTTGCTGGACTGCGAGTACTCACTTTCTTGA 2418 44.13 MLRSAPGMEDQRDDVAPSEQGPSNASWWSSDFEEKFGSVSLGPREDIVSEKEEIINSDQDVLLSPQRASQILWGTGMLCEPIPDGFYSVIPDKRLKERFHSIPSLDELRALEAEGYRNDVILVETEKDKKLSMLKQLILTLVKGLSSNPAAIIKKIAGLVSDFYKRPILESPAKAALEENSHLFEDRGIQLLGQIKFGSCRPRAILFKALADTVGLESRLMVGLPNEGAIGCVDSYKHMSVTVVLNSVELVVDLMRFPGQLLPRSTKAIFMTHISAAGESDSAENDSCDSPLEPNSPLYGFSERVDPDSAEKDESLQFHRKFEAASNAYGHSLRNMMLRSSTTLDRKLSLSHSEPNIANAFWRRSRRKDIAEQRTASSSPEHPSFRARGRSMLSGDRKAFRDFSDDVSTSRSDGASTSTSEARRLRRRSISITPEIGDDIVRAVRAMSETLKQNRLLRGQEDDRSFSHPSNERNSSSDVQRNDQVGSQRAISLPSSPHVYRGQTSDRIGHSAYPNHELASKWTKVLESFSLNDKPLLPYPEWNIDYSELTVGIRIGIGFFGEVFRGIWNGTDVAIKVFLEQDLTPENIEDFCNEISILSRLRHPNVILFLGACTKPPRLSMITEYMEMGSLYSLIHLSGQKKKLSWRRRLKMLRDICRGLMCIHRMKIAHRDLKSANCLVNKHWTVKICDFGLSRILTDAPARGSPSAGTPEWMAPELFRNEPFTEKCDIFSLGVIMWELCTLNRPWEGVPPERVVYAVGTEGSRLEIPEGPLGRLISDCWAEPNERPSCEEILSRLLDCEYSLS 805
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 32381834 32391817 - ClCG02G017840.1 Cla02g01746 267872
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g01746 805 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 36 803 - -
Cla02g01746 805 MobiDBLite consensus disorder prediction 455 469 - -
Cla02g01746 805 Pfam Protein tyrosine and serine/threonine kinase 550 797 IPR001245 GO:0004672|GO:0006468
Cla02g01746 805 MobiDBLite consensus disorder prediction 470 502 - -
Cla02g01746 805 MobiDBLite consensus disorder prediction 280 313 - -
Cla02g01746 805 SUPERFAMILY Protein kinase-like (PK-like) 525 797 IPR011009 -
Cla02g01746 805 MobiDBLite consensus disorder prediction 369 426 - -
Cla02g01746 805 MobiDBLite consensus disorder prediction 391 408 - -
Cla02g01746 805 ProSitePatterns Protein kinases ATP-binding region signature. 555 576 IPR017441 GO:0005524
Cla02g01746 805 Pfam Ethylene-responsive protein kinase Le-CTR1 66 261 - -
Cla02g01746 805 ProSiteProfiles Protein kinase domain profile. 549 804 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla02g01746 805 CDD STKc_MAP3K-like 555 797 - -
Cla02g01746 805 MobiDBLite consensus disorder prediction 453 507 - -
Cla02g01746 805 MobiDBLite consensus disorder prediction 1 16 - -
Cla02g01746 805 SMART serkin_6 549 798 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla02g01746 805 Gene3D Transferase(Phosphotransferase) domain 1 628 804 - -
Cla02g01746 805 ProSitePatterns Serine/Threonine protein kinases active-site signature. 668 680 IPR008271 GO:0004672|GO:0006468
Cla02g01746 805 Gene3D Phosphorylase Kinase; domain 1 542 627 - -
Cla02g01746 805 MobiDBLite consensus disorder prediction 1 29 - -
Cla02g01746 805 PANTHER MITOGEN ACTIVATED PROTEIN KINASE KINASE KINASE-LIKE PROTEIN-RELATED 36 803 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g01746 Cla-Chr2:32381834 Cla05g01828 Cla-Chr5:30182438 8.99E-79 dispersed
Cla02g01746 Cla-Chr2:32381834 Cla04g00964 Cla-Chr4:24754951 1.15E-74 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80361 PF07714 PK_Tyr_Ser-Thr 4.50E-59 CL0016 Cla PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g01746 - - cmo:103490492 1540.01