Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g01773 ATGCCAGATAATCTGCAAGTTCAGAGGAATGCTGTTCCTAACCAATCCCCTGATATCTCAGAGGCGCTCTGGCGGTTGGAAATCAGTGATAATCAAGATGGAGGCGATGCAGCCGAATCAAGCCCTTACCCCGATCGACCTGGCGAACCAGATTGCTTATATTACATGAGAACTGGGTCTTGTAGCTATGGAAGTAATTGTCGTTTTAATCATCCTGTTTACGTTGCTCAGGGTGCTCTGTATAATGGGGAACTTCCAGAAAGAATTGGACAACCCGACTGTGAGTATTTTCTGAAGACAGGGACCTGTAAATATGGAGGATCATGTAAGTATCATCATCCAAGAGATAGGCGTGGAGCTGGGCCTGTTACATTTAATATTTTAGGCCTTCCCATGAGACAGGAAGAAAAGTCATGCCCTTATTATTTGCGCACTGGATCGTGTAAATTTGGAGTTTCGTGCAAGTTCAATCATCCCCAGCCATCACCAGTTGGAAATATGCTACCTCAAGCTAGGCCCGGTGCTTTGGGTTCTGGAGGCACTCCGTTCATGCCTTCATCTGGTGTGCCATATACTGGTGGAATTCCTGCTTGGTCATTGCCTAGAGTACAATATATGCCTGGTCCATGCGTACAAGGCCAACAATCTTATGTGCCTGTCTTGGTTTCTCCATCACAGGGTGCCATAGCTGCTCAAGACTGGAACACTTACGTGGGCAATGTCAGTCCCATTCTTCCCAATCTTGGTTACAATTCTGTCAATTTGGAAGAGTCGTATTCTAATGGGCAGTTGGCCTTATCAACATCAACTCCAACGCTACCCGATCGACCTGATCAACCAGAATGCCGTTATTTTATGAACAACGGCACCTGCAAGTATGGATCTGATTGCAAATTCCATCATCCAAAACAAAGAATTGCACAATCAGCAACTAATGCGCTTGGACTTCCTTCAAGACCCGGACAAGCTATATGTTCATACTACAATATGTATGGGATCTGCAAGTATGGCCCAAGTTGTAAATTTGACCACCCATCTGCAACATATCCTTATAATTATGGCTTCACTCTGCCTGTGCTTGATTCATCTTTTATAAAGTATCCCAGCAACAACTTCACAATGTCCTCACATGAGACTTTGCCCCAAACATTATCTAAATCTTCTGAATGGGTTCAGAAAGCCGATCCATCGAACAACAAATGCCGAACTACCGATTCGAAAGTCGTAGTAGAGAGCACAGCTGAAGAGGCGACCTCTGTTTCATGCTCATTACCAGGTGGTTCAGAAACTTTGCAAGATCAATCTGCTGTGGGGCAGGGGAAGGCATTTTTTGTGTTGAATAAAGTGCAGGTGATGCTTAGTCTAAGCCAAGTGGAGACGGGTTTAGTTGCCAATCCTAAAGAATCATGTCGTGCTAAATTACAAAACAACAATGTGTTAAGTGTGGAATTCGAATCTTTGGCTGAGGGTACTTGTTAG 1479 44.35 MPDNLQVQRNAVPNQSPDISEALWRLEISDNQDGGDAAESSPYPDRPGEPDCLYYMRTGSCSYGSNCRFNHPVYVAQGALYNGELPERIGQPDCEYFLKTGTCKYGGSCKYHHPRDRRGAGPVTFNILGLPMRQEEKSCPYYLRTGSCKFGVSCKFNHPQPSPVGNMLPQARPGALGSGGTPFMPSSGVPYTGGIPAWSLPRVQYMPGPCVQGQQSYVPVLVSPSQGAIAAQDWNTYVGNVSPILPNLGYNSVNLEESYSNGQLALSTSTPTLPDRPDQPECRYFMNNGTCKYGSDCKFHHPKQRIAQSATNALGLPSRPGQAICSYYNMYGICKYGPSCKFDHPSATYPYNYGFTLPVLDSSFIKYPSNNFTMSSHETLPQTLSKSSEWVQKADPSNNKCRTTDSKVVVESTAEEATSVSCSLPGGSETLQDQSAVGQGKAFFVLNKVQVMLSLSQVETGLVANPKESCRAKLQNNNVLSVEFESLAEGTC 492
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 32734517 32739165 + ClCG02G018110.2 Cla02g01773 267899
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g01773 492 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 321 345 IPR000571 GO:0046872
Cla02g01773 492 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 278 303 IPR000571 GO:0046872
Cla02g01773 492 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 91 115 IPR000571 GO:0046872
Cla02g01773 492 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 48 72 IPR000571 GO:0046872
Cla02g01773 492 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 137 160 IPR000571 GO:0046872
Cla02g01773 492 Gene3D - 43 121 - -
Cla02g01773 492 Gene3D - 274 351 - -
Cla02g01773 492 ProSiteProfiles Zinc finger C3H1-type profile. 276 304 IPR000571 GO:0046872
Cla02g01773 492 SUPERFAMILY CCCH zinc finger 132 161 IPR036855 GO:0046872
Cla02g01773 492 PANTHER PROTEIN PHOSPHATASE RELATED 7 408 - -
Cla02g01773 492 SUPERFAMILY CCCH zinc finger 93 117 IPR036855 GO:0046872
Cla02g01773 492 SUPERFAMILY CCCH zinc finger 51 73 IPR036855 GO:0046872
Cla02g01773 492 ProSiteProfiles Zinc finger C3H1-type profile. 133 161 IPR000571 GO:0046872
Cla02g01773 492 SUPERFAMILY CCCH zinc finger 280 304 IPR036855 GO:0046872
Cla02g01773 492 SUPERFAMILY CCCH zinc finger 322 347 IPR036855 GO:0046872
Cla02g01773 492 Gene3D - 122 170 - -
Cla02g01773 492 ProSiteProfiles Zinc finger C3H1-type profile. 319 347 IPR000571 GO:0046872
Cla02g01773 492 ProSiteProfiles Zinc finger C3H1-type profile. 88 116 IPR000571 GO:0046872
Cla02g01773 492 ProSiteProfiles Zinc finger C3H1-type profile. 46 74 IPR000571 GO:0046872
Cla02g01773 492 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 26 7 408 - -
Cla02g01773 492 SMART c3hfinal6 88 115 IPR000571 GO:0046872
Cla02g01773 492 SMART c3hfinal6 46 73 IPR000571 GO:0046872
Cla02g01773 492 SMART c3hfinal6 135 160 IPR000571 GO:0046872
Cla02g01773 492 SMART c3hfinal6 276 303 IPR000571 GO:0046872
Cla02g01773 492 SMART c3hfinal6 319 346 IPR000571 GO:0046872
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g01773 Cla-Chr2:32734517 Cla03g01037 Cla-Chr3:19840153 3.16E-92 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60693 PF00642 zf-CCCH 9.40E-09 CL0537 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g01773 - - csv:101221933 884.019