Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g01784 ATGACCGCGTCTATAAATCCTTCACCCATCTTCATCATTTTATCACAACAATCAAATTCCCATCAATCTCATTCCTTCAATCTAATTTCCCATCTTTTCTTCCTTTTTTCCTTCAACTTCTCGCCGTTCTGTTTTTACTTTCCCCTGTTCTACTTTCACCACGGTGGCGCCGCCCAGGGATTCTACTGTTGCTGCAGTGAACACAAAATGGATGGCTCAGACGGAACCTCTGGCGGCGCTCCGCCGCCATTTCTGACCAAAACATATGAGATGGTGGATGATCCGATGACCAATTCCATCGTATCGTGGAGTCAAAGTGGTTTCAGCTTTGTGGTTTGGAACCCACCGGAATTCGCACAAGAACTACTTCCGATTTATTTCAAACACAACAATTTTTCTAGTTTCGTTCGTCAATTAAACACTTATGGGTTTAGAAAAATCGATCGAGAACAATGGGAATTCGCGAACGAGGGGTTTGTAAGAGGACGAACCCATCTTCTAAAAAGCATCCATAGAAGAAAACCAATCTACAGCCATAGCCAGAGCAATAGCCATGGAAATGGAGCTCCATTATCAGAACAAGAAAGACAAGAACTCGAGCAAAAAATCAAAACCCTTCATCAAGAAAAGACCATTCTCCAATCCCAATTACAGAAACACGAAAACGAAAAAGAACAAATTGGGCTTCAAATTCAAACAATCTGCCAGCAATTATGGCGAATGGGGAATCAACAAAAGCAGCTAATTGGGATATTGGGAGCAGAGTTGCAGAAGCATCAGCAGAGCAAAAAGAGGAAAATGTGGAAAGTGAATGAGTTATTAGTTGAAGAATGGACAGAATTTGAGAGAGATGAGAAGAATAATATGAAGAAGAAGGTGAAGGTTCCGCCATTGGAGCTGATGGGGAAGCTGGAATTGTCATTGGGGTTGTGTGAGGATTTGCTTTGCAATGTGGCGCAGGTTCTGAGGGAAGGGAAGGAAATGGAAGTGAAAAAAGAAGGGGAAATGAGGAGTGGAGTGAATGATGTGTTTTGGGAACAATTCTTGACGGAGATTCCAGGGTCGTCCAAAGTTAGTGAAGTTTATTTAGATAGAAGGAACAATGTTGTAAGGGGAAAGCAAACGTACCGTACGTACGGTTTCGTTTCGGTATTTGTGCCCTTGGGGTTTTCGGCCGATATCCGAAATTCAACAAATAGCCGTCCGTCGTCGTCTCAAATCGGTGCTAAACCCTGTATCTGTAAGCAATTCCGTAAAGTTTCTTGCCCAACAGTTATGCGTAGCTCAAAGAGGACGAGGTCTGAAGAGGGTCAAAATGATTGGATTAGTCAGCTTCCGGAATCTATTCTTGTTGACATTCTTTCGTATTTACCAACAAAGGATGCTGTAAAGATGACATTGATTTCAAGATTCAGGAATCTTTGGACCTATATTCGTTGTCTCTCCTTTGATGAATGTGCATATCATGACCACAGTAGTTATGATGGTGAAAATTATGATGGTCCACATTATGATGAAAGTTTCCTAAATCTAATTCGTCATGTCTTGATACTTCATGAACGTACTACAATTGATGAGTTTCATCTCAAATTTGCTTTCAATTTGTTTAATGCTATTCATGATGATCATTATAATTCTGATGGTTATGCATCTAAAGAAAGACGAATGGCAAGTGAGCTTACTACATGGATTAAATTTTCTTTGAGGAAACAAGTTAAGGTTCTTGATATTGATTTATTAGGATGTGGTTTGTCAGAGCCAGAAGTAAATTATGAACTGCCTACTAGTATTTTAACTAATAACTATCTAAAGGAGCTCAGTTTGGCTGGCTGTGGAATCGAGGAAAAAGGGCGTATTCATCTGACGTCTCTCACTGTGCTTTCGCTCAAGGAAATAATATTGAGTGATAAGATTATGGGTGAAATCATTGTAGGATGCCCAATGCTTGAAGAACTTTCTCTTGATGGATGTTGTGGTCTTCGTAAGCTGAAGTTAACTACTTCTAATATCAAGAGATTGAGGATTTTTATTGGATGGAGAAATGAAGTGGCAAATTCAAGGTTGGAGATTAGCTGCCCTGGTCTCAAATCATTAGAACTTGCTGGATCAATACAGCTTGTACAGTTAAAGTATTCATCTTCTATTTCCGACGCCTCCCTTTATTATAGCCGCACCTTCATGTGCGAACGCATGATATATGAAAAAGTTCAAATGCTGCTGTGGAAGCTAGCTGAAGTCAATGTTTTCATACCATGCACATGGACTATTTTGTTTTATATATCTGTGAATTCTGGGCTAGCACGCATGCATGCAACTCTGCTAATCATTATTTTGATGTCATCAGATCTTCACAATATGGGAGTTGACATATGTCCCAATTCCTGTCACTGGTTGGAAATCTGTAGAGTTCAGACTTCTTTTCACAAAGTGGCACCTGCCTGGAATATGCAGCATTCTCAGGAATTCACATTGACTGAGGAAGCAAAGTGGATGGAGGCATATGAATTTGATGGTAAAGATTACTGGAAGTCACAGAATGGCGATTACCGTGGCCTCAGAAAGTACCTCAAGACGGTTATGATATACGGATATGTGACTGAGCCATATGTGTTGGAGCTTGTAGAATTTCTATTGAAGAATGCCTTGGTCCTCGAAAAGATGGTCATTTCCACCAAGAGGACTCTCCAGCCCATTCACCAATATGAATTATTCAAAGACGCTGTCTTTGATCAGGAGGATCATTTCACTCCTGAGGAACTACTTCAGTTTTCTCAGAAACTGTTAACTTTTCCCAGGGCCTCCAAGTCTGCTGATGCTGAGATTGGGGCAGGGCCTACTCTTCTAGAACTGCCTTTTGTAATGGAATCAGGATAA 2874 40.64 MTASINPSPIFIILSQQSNSHQSHSFNLISHLFFLFSFNFSPFCFYFPLFYFHHGGAAQGFYCCCSEHKMDGSDGTSGGAPPPFLTKTYEMVDDPMTNSIVSWSQSGFSFVVWNPPEFAQELLPIYFKHNNFSSFVRQLNTYGFRKIDREQWEFANEGFVRGRTHLLKSIHRRKPIYSHSQSNSHGNGAPLSEQERQELEQKIKTLHQEKTILQSQLQKHENEKEQIGLQIQTICQQLWRMGNQQKQLIGILGAELQKHQQSKKRKMWKVNELLVEEWTEFERDEKNNMKKKVKVPPLELMGKLELSLGLCEDLLCNVAQVLREGKEMEVKKEGEMRSGVNDVFWEQFLTEIPGSSKVSEVYLDRRNNVVRGKQTYRTYGFVSVFVPLGFSADIRNSTNSRPSSSQIGAKPCICKQFRKVSCPTVMRSSKRTRSEEGQNDWISQLPESILVDILSYLPTKDAVKMTLISRFRNLWTYIRCLSFDECAYHDHSSYDGENYDGPHYDESFLNLIRHVLILHERTTIDEFHLKFAFNLFNAIHDDHYNSDGYASKERRMASELTTWIKFSLRKQVKVLDIDLLGCGLSEPEVNYELPTSILTNNYLKELSLAGCGIEEKGRIHLTSLTVLSLKEIILSDKIMGEIIVGCPMLEELSLDGCCGLRKLKLTTSNIKRLRIFIGWRNEVANSRLEISCPGLKSLELAGSIQLVQLKYSSSISDASLYYSRTFMCERMIYEKVQMLLWKLAEVNVFIPCTWTILFYISVNSGLARMHATLLIIILMSSDLHNMGVDICPNSCHWLEICRVQTSFHKVAPAWNMQHSQEFTLTEEAKWMEAYEFDGKDYWKSQNGDYRGLRKYLKTVMIYGYVTEPYVLELVEFLLKNALVLEKMVISTKRTLQPIHQYELFKDAVFDQEDHFTPEELLQFSQKLLTFPRASKSADAEIGAGPTLLELPFVMESG 957
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 32858634 32865710 - ClCG02G018220.2 Cla02g01784 267910

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g01784 957 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-4D 77 293 - -
Cla02g01784 957 SMART 9598neu4hmm 850 942 IPR006566 -
Cla02g01784 957 SUPERFAMILY F-box domain 438 498 IPR036047 GO:0005515
Cla02g01784 957 MobiDBLite consensus disorder prediction 176 197 - -
Cla02g01784 957 ProSiteProfiles F-box domain profile. 439 470 IPR001810 GO:0005515
Cla02g01784 957 Pfam FBD 855 889 IPR006566 -
Cla02g01784 957 Coils Coil 189 230 - -
Cla02g01784 957 SUPERFAMILY Winged helix DNA-binding domain 80 173 IPR036390 -
Cla02g01784 957 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 77 293 IPR027725 -
Cla02g01784 957 Pfam HSF-type DNA-binding 84 173 IPR000232 GO:0003700|GO:0006355|GO:0043565
Cla02g01784 957 SUPERFAMILY RNI-like 587 704 - -
Cla02g01784 957 Gene3D Ribonuclease Inhibitor 548 749 IPR032675 -
Cla02g01784 957 SMART hsfneu3 80 173 IPR000232 GO:0003700|GO:0006355|GO:0043565
Cla02g01784 957 PRINTS Heat shock factor (HSF) domain signature 135 147 IPR000232 GO:0003700|GO:0006355|GO:0043565
Cla02g01784 957 PRINTS Heat shock factor (HSF) domain signature 84 107 IPR000232 GO:0003700|GO:0006355|GO:0043565
Cla02g01784 957 PRINTS Heat shock factor (HSF) domain signature 122 134 IPR000232 GO:0003700|GO:0006355|GO:0043565
Cla02g01784 957 MobiDBLite consensus disorder prediction 176 191 - -
Cla02g01784 957 ProSitePatterns HSF-type DNA-binding domain signature. 123 147 IPR000232 GO:0003700|GO:0006355|GO:0043565
Cla02g01784 957 Gene3D - 78 174 IPR036388 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g01784 K09419 HSFF; heat shock transcription factor, other eukaryote - csv:101209866 808.135
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g01784 Cla-Chr2:32858634 Cla07g00047 Cla-Chr7:510178 1.30E-51 dispersed
Cla11g01140 Cla-Chr11:23584565 Cla02g01784 Cla-Chr2:32858634 2.49E-11 dispersed
Cla06g01726 Cla-Chr6:30806782 Cla02g01784 Cla-Chr2:32858634 4.26E-14 transposed
Cla01g02342 Cla-Chr1:37191458 Cla02g01784 Cla-Chr2:32858634 6.04E-55 wgd
Cla02g01784 Cla-Chr2:32858634 Cla03g00695 Cla-Chr3:8397293 1.71E-61 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cla05g00509 . 37 237 HSF AT4G17750 59.6 1.9e-62 237.3
Cla09g00684 . 85 326 HSF AT4G17750 51.0 1.9e-59 227.3
Cla08g01675 . 42 242 HSF AT4G17750 54.6 6.2e-58 222.2
Cla01g00293 . 41 163 HSF AT4G17750 61.8 3.8e-39 159.8
Cla08g01578 CCT 14 118 HSF AT4G17750 69.5 3.8e-39 159.8
Cla05g02052 CCT 20 118 HSF AT4G17750 69.7 2.4e-38 157.1
Cla05g00509 . 38 242 HSF AT5G16820 57.0 4.9e-60 229.2
Cla07g00047 . 78 299 HSF AT5G16820 51.7 3.2e-59 226.5
Cla09g00684 . 86 298 HSF AT5G16820 54.0 5.6e-56 215.7
Cla08g01675 . 43 253 HSF AT5G16820 51.1 4.8e-55 212.6
Cla01g02342 CCT,ECH 9 191 HSF AT5G16820 50.3 5.5e-43 172.6
Cla06g00845 CCT 10 176 HSF AT5G16820 51.6 6.0e-42 169.1
Cla02g01784 . 82 257 HSF AT5G16820 50.3 3.0e-41 166.8
Cla10g00139 . 24 538 HSF AT1G32330 51.6 9.8e-117 417.5
Cla05g00509 . 26 227 HSF AT1G32330 54.0 1.1e-59 228.0
Cla09g00684 . 74 294 HSF AT1G32330 51.8 1.0e-57 221.5
Cla07g00047 . 64 263 HSF AT1G32330 53.1 3.9e-57 219.5
Cla08g01675 . 31 223 HSF AT1G32330 54.1 1.1e-54 211.5
Cla08g01578 CCT 20 117 HSF AT1G32330 72.4 3.1e-38 156.8
Cla07g00047 . 78 299 HSF AT3G02990 52.6 3.0e-62 236.5
Cla05g00509 . 38 241 HSF AT3G02990 57.6 2.5e-61 233.4
Cla09g00684 . 86 309 HSF AT3G02990 52.4 2.0e-58 223.8
Cla08g01675 . 43 242 HSF AT3G02990 51.7 6.1e-55 212.2
Cla06g00845 CCT 10 172 HSF AT3G02990 50.3 3.8e-41 166.4
Cla05g00509 . 25 287 HSF AT2G26150 52.3 3.5e-68 255.8
Cla09g00684 . 74 293 HSF AT2G26150 54.3 5.3e-64 241.9
Cla10g00139 . 29 266 HSF AT2G26150 53.1 1.1e-56 217.6
Cla11g00154 . 28 247 HSF AT2G26150 51.1 9.3e-53 204.5
Cla03g00695 CCT,ECH 5 156 HSF AT2G26150 52.0 4.1e-40 162.5
Cla02g01784 . 71 258 HSF AT4G18880 52.7 2.7e-51 199.9
Cla02g01784 . 73 252 HSF AT4G13980 50.6 1.4e-43 174.5
Cla05g00509 . 26 218 HSF AT5G43840 54.4 1.6e-55 213.4
Cla08g01675 . 31 234 HSF AT5G43840 50.5 1.5e-45 180.3
Cla09g00684 . 74 411 HSF AT3G22830 51.6 6.2e-88 321.6
Cla07g00047 . 53 387 HSF AT3G22830 50.9 6.8e-87 318.2
Cla08g01675 . 31 253 HSF AT3G22830 54.1 2.1e-64 243.4
Cla10g00139 . 12 265 HSF AT3G22830 50.8 2.1e-59 226.9
Cla09g00684 . 73 387 HSF AT3G51910 50.9 2.1e-71 266.2
Cla07g00047 . 63 359 HSF AT3G51910 52.5 8.6e-70 260.8
Cla08g01675 . 31 223 HSF AT3G51910 56.0 5.1e-54 208.4
Cla07g00047 . 64 358 HSF AT3G63350 50.3 4.6e-66 248.4
Cla08g01675 . 31 230 HSF AT3G63350 52.5 3.5e-50 195.7
Cla02g01784 . 74 209 HSF AT3G63350 56.6 3.1e-38 156.0
Cla11g00154 . 32 248 HSF AT5G54070 51.4 2.6e-52 203.0
Cla01g01646 . 46 337 HSF AT4G36990 51.8 2.4e-70 262.7
Cla08g01578 CCT 17 115 HSF AT5G62020 67.7 1.9e-38 156.8
Cla01g00293 . 64 385 HSF AT4G11660 51.9 8.3e-79 291.2
Cla08g01578 CCT 16 121 HSF AT4G11660 71.7 3.9e-44 176.0
Cla01g01646 . 46 148 HSF AT4G11660 72.8 1.8e-41 167.2
Cla03g01198 . 20 119 HSF AT4G11660 68.0 1.1e-38 157.9
Cla10g01503 CCT 14 222 HSF AT2G41690 53.6 9.5e-52 200.7
Cla04g00354 CCT 7 214 HSF AT2G41690 51.0 2.6e-49 192.6
Cla08g01578 CCT 9 372 HSF AT1G46264 52.9 2.1e-89 326.2
Cla05g02052 CCT 1 238 HSF AT1G46264 63.8 2.1e-81 299.7
Cla03g01198 . 19 200 HSF AT1G46264 51.9 3.0e-51 199.5
Cla10g00139 . 33 161 HSF AT1G46264 60.5 3.2e-37 152.9
Cla02g01784 . 74 184 HSF AT1G46264 63.1 4.2e-37 152.5
Cla10g01503 CCT 21 118 HSF AT1G46264 68.4 7.2e-37 151.8
Cla05g00509 . 37 237 HSF AT4G17750 59.6 1.9e-62 237.3
Cla09g00684 . 85 326 HSF AT4G17750 51.0 1.9e-59 227.3
Cla08g01675 . 42 242 HSF AT4G17750 54.6 6.2e-58 222.2
Cla01g00293 . 41 163 HSF AT4G17750 61.8 3.8e-39 159.8
Cla08g01578 CCT 14 118 HSF AT4G17750 69.5 3.8e-39 159.8
Cla05g02052 CCT 20 118 HSF AT4G17750 69.7 2.4e-38 157.1
Cla05g00509 . 38 242 HSF AT5G16820 57.0 4.9e-60 229.2
Cla07g00047 . 78 299 HSF AT5G16820 51.7 3.2e-59 226.5
Cla09g00684 . 86 298 HSF AT5G16820 54.0 5.6e-56 215.7
Cla08g01675 . 43 253 HSF AT5G16820 51.1 4.8e-55 212.6
Cla01g02342 CCT,ECH 9 191 HSF AT5G16820 50.3 5.5e-43 172.6
Cla06g00845 CCT 10 176 HSF AT5G16820 51.6 6.0e-42 169.1
Cla02g01784 . 82 257 HSF AT5G16820 50.3 3.0e-41 166.8
Cla10g00139 . 24 538 HSF AT1G32330 51.6 9.8e-117 417.5
Cla05g00509 . 26 227 HSF AT1G32330 54.0 1.1e-59 228.0
Cla09g00684 . 74 294 HSF AT1G32330 51.8 1.0e-57 221.5
Cla07g00047 . 64 263 HSF AT1G32330 53.1 3.9e-57 219.5
Cla08g01675 . 31 223 HSF AT1G32330 54.1 1.1e-54 211.5
Cla08g01578 CCT 20 117 HSF AT1G32330 72.4 3.1e-38 156.8
Cla07g00047 . 78 299 HSF AT3G02990 52.6 3.0e-62 236.5
Cla05g00509 . 38 241 HSF AT3G02990 57.6 2.5e-61 233.4
Cla09g00684 . 86 309 HSF AT3G02990 52.4 2.0e-58 223.8
Cla08g01675 . 43 242 HSF AT3G02990 51.7 6.1e-55 212.2
Cla06g00845 CCT 10 172 HSF AT3G02990 50.3 3.8e-41 166.4
Cla05g00509 . 25 287 HSF AT2G26150 52.3 3.5e-68 255.8
Cla09g00684 . 74 293 HSF AT2G26150 54.3 5.3e-64 241.9
Cla10g00139 . 29 266 HSF AT2G26150 53.1 1.1e-56 217.6
Cla11g00154 . 28 247 HSF AT2G26150 51.1 9.3e-53 204.5
Cla03g00695 CCT,ECH 5 156 HSF AT2G26150 52.0 4.1e-40 162.5
Cla02g01784 . 71 258 HSF AT4G18880 52.7 2.7e-51 199.9
Cla02g01784 . 73 252 HSF AT4G13980 50.6 1.4e-43 174.5
Cla05g00509 . 26 218 HSF AT5G43840 54.4 1.6e-55 213.4
Cla08g01675 . 31 234 HSF AT5G43840 50.5 1.5e-45 180.3
Cla09g00684 . 74 411 HSF AT3G22830 51.6 6.2e-88 321.6
Cla07g00047 . 53 387 HSF AT3G22830 50.9 6.8e-87 318.2
Cla08g01675 . 31 253 HSF AT3G22830 54.1 2.1e-64 243.4
Cla10g00139 . 12 265 HSF AT3G22830 50.8 2.1e-59 226.9
Cla09g00684 . 73 387 HSF AT3G51910 50.9 2.1e-71 266.2
Cla07g00047 . 63 359 HSF AT3G51910 52.5 8.6e-70 260.8
Cla08g01675 . 31 223 HSF AT3G51910 56.0 5.1e-54 208.4
Cla07g00047 . 64 358 HSF AT3G63350 50.3 4.6e-66 248.4
Cla08g01675 . 31 230 HSF AT3G63350 52.5 3.5e-50 195.7
Cla02g01784 . 74 209 HSF AT3G63350 56.6 3.1e-38 156.0
Cla11g00154 . 32 248 HSF AT5G54070 51.4 2.6e-52 203.0
Cla01g01646 . 46 337 HSF AT4G36990 51.8 2.4e-70 262.7
Cla08g01578 CCT 17 115 HSF AT5G62020 67.7 1.9e-38 156.8
Cla01g00293 . 64 385 HSF AT4G11660 51.9 8.3e-79 291.2
Cla08g01578 CCT 16 121 HSF AT4G11660 71.7 3.9e-44 176.0
Cla01g01646 . 46 148 HSF AT4G11660 72.8 1.8e-41 167.2
Cla03g01198 . 20 119 HSF AT4G11660 68.0 1.1e-38 157.9
Cla10g01503 CCT 14 222 HSF AT2G41690 53.6 9.5e-52 200.7
Cla04g00354 CCT 7 214 HSF AT2G41690 51.0 2.6e-49 192.6
Cla08g01578 CCT 9 372 HSF AT1G46264 52.9 2.1e-89 326.2
Cla05g02052 CCT 1 238 HSF AT1G46264 63.8 2.1e-81 299.7
Cla03g01198 . 19 200 HSF AT1G46264 51.9 3.0e-51 199.5
Cla10g00139 . 33 161 HSF AT1G46264 60.5 3.2e-37 152.9
Cla02g01784 . 74 184 HSF AT1G46264 63.1 4.2e-37 152.5
Cla10g01503 CCT 21 118 HSF AT1G46264 68.4 7.2e-37 151.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002952 2 3 1 1 0 1 1 1 1 2 1 1 1 3 2 1 1 2 1 1 2 3 2 2 2 2 3 4 3 1 51
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60695 PF00447 HSF_DNA-bind 8.50E-31 CL0123 Cla TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla02g01784 Cla_Chr02 FPKM 1.144043 1.305322 0.494866 0.576481 2.185986 2.774468 1.721368 4.250908 4.319058 3.567503