Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g01791 ATGAGCAAATCACAAGGGCCTTCATCACTCAAAAGGAAAAGACCAGACTCAGCTCATGGCTCAGGGGGAGCTCTCATTGAGCATGAAAAAGTGCTCCATGATCTGATTTGCAGCAAGCAAAGCATGGGGATTTGGATTGGAGACATTAAAAGAGAAACTAAATATTCTGACAGTGTGGTAACAAAATCACTCAAGTCCCTTCAAGCTAGAGGCCTGGTTAAACTAGTTGAGCACTATCAAAACAAAGGGAAGAAATTCTACCTGTCAAAAGATTTCGAACCATCGAAAGAATTGACTGGCGGTAATTGGTATAGCGACGGGAAGCTCGACCAAGAATACATCAATACTCTTAAAGGGTTCTGTGCTAGAATGATACAGAAGTTGAAGGTGGCCACAATTGAAGGGATTGTAGATTCTTTCAAAAAGAGTGGAGCGTCCAAAGTAGACTTGTCTAGGGAGCAAATTGAAGAGATTGTAAATGCTTTGGTGTTGGACAATGAAGTTATGGAGGTAAAGAGCACTGGTTCAGGGGAGTTTGATTTTATTCCTGTTGGGAAGATTTGTTATAAGTGCTATGCTAAAGGAGGTGTTAAAGGGGAGCCCAAAACAGGAGCCATGGCTTCTATTCCTTGTGGAGTTTGTCCAAGGATTAGTCATTGTACCCCAGACGGCATCATTTCCCCTAGGACTTGTGTATATTACACCAAGTGGTTGAAGGGGAGTGCCTTCCTTTGCTCTCCCTCAGTTCATAGTCCTCTTATTCCTCGGGTGAAGTTTACAGCCGAGGAGCTCCGTCGGATTATGGACTTTAAGCATAACATTCGTAATATGTCTGTTATTGCTCACGTCGATCATGGGAAGTCAACACTTACGGACTCTCTTGTGGCTGCTGCGGGTATCATTGCACAAGAAGTTGCCGGTGATGTACGAATGACAGACACTCGCCAAGATGAGGCAGAGCGTGGTATCACCATTAAATCTACTGGAATCTCCCTCTACTATGAGATGTCTGATGAATCCTTGAAAAGTTACAAGGGAGAGAGACAGGGAAATGAATATCTTATCAATCTTATTGATTCACCCGGGCACGTTGACTTCTCATCTGAGGTTACAGCTGCTTTGCGTATTACCGATGGTGCCCTTGTTGTGGTGGATTGTGTCGAAGGTGTTTGTGTCCAAACAGAGACCGTGCTCCGTCAGGCTTTGGGAGAGAGGATTAGACCTGTCTTGACTGTTAACAAGATGGACAGGTGCTTCCTTGAACTCCAAGTGGATGGAGAAGAGGCTTATCAAACATTTCAGAGGGTGATAGAGAATGCCAATGTGATTATGGCCACATACGAGGATCCACTTCTTGGGGATGTTCAAGTGTACCCCGAGAAAGGAACAGTCGCTTTCTCTGCTGGTCTGCACGGTTGGGCGTTTACCCTGACTAACTTTGCGAAGATGTATGCCTCCAAGTTTGGAGTAGACGAGTCAAAGATGATGGAGAGACTTTGGGGTGAGAACTTCTTTGATCCTGCAACCAAGAAGTGGACGAGCAAGAACACTGGCTCTCCAACATGCAAGCGTGGGTTTGTCCAGTTCTGCTACGAACCCATCAAGCAGATCATTGCAACTTGCATGAACGATCAGAAGGACAAGCTATGGCCCATGTTGCAGAAGCTTGGAGTTGTGATGAAGTCTGAAGAGAAGGATCTGATGAGTAAAGCATTGATGAAGAGGGTCATGCAAACATGGCTCCCAGCAAGCAATGCTCTTTTGGAAATGATGATCTTTCATCTTCCATCCCCTGCCACGGCTCAAAAGTACCGTGTTGAGAATTTGTACGAGGGTCCACTAGATGATGCTTATGCGAGTGCCATTAGAAGTTGTGATCCTGAAGGACCTCTTATGCTTTATGTATCGAAGATGATTCCTGCATCAGACAAGGGCAGGTTCTTTGCCTTTGGACGTGTCTTCTCTGGGAAAGTTTCAACTGGTTTGAAAGTTAGAATTATGGGACCAAACTATGTTCCCGGCGAGAAGAAAGATTTGTATGTGAAGAGTGTCCAGAGAACTGTCATTTGGATGGGAAAGAAGCAAGAAACGGTGGAGGATGTGCCGTGTGGTAACACTGTTGCCATGGTTGGATTGGATCAATTCATCACAAAGAATGCTACTCTGACAAACGAGAAGGAAGTTGATGCCCATCCAATTCGAGCCATGAAATTTTCTGTATCGCCTGTGGTGCGTGTGGCTGTTCAGTGCAAGGTGGCATCTGATCTTCCCAAGCTCGTGGAAGGGCTTAAACGTCTGGCGAAGTCAGATCCTATGGTTGTATGTACAATGGAGGAATCTGGTGAGCACATTGTTGCCGGTGCTGGAGAACTGCATCTTGAGATCTGTCTGAAGGATTTGCAAGATGACTTCATGGGTGGAGCTGAGATCATAAAATCTGACCCTGTTGTCTCTTTCCGTGAAACTGTCCTTGAGAGGTCATGCCGCACGGTGATGAGTAAATCCCCCAACAAACACAATCGTCTATACATGGAAGCACGACCGATGGAGGAAGGACTGGCAGAAGCTATTGACGATGGCCGCATCGGACCACGGGATGACCCTAAAGTTAGGTCTAAAATCTTGTCAGAGGAGTTTGGTTGGGACAAAGATCTTGCTAAGAAGATTTGGTGCTTTGGTCCTGAGACTACCGGCCCTAACATGGTGGTTGATATGTGTAAGGGAGTTCAATACCTAAATGAAATCAAGGATTCCGTTGTCGCCGGTTTCCAGTGGGCGTCGAAAGAAGGTGCATTGGCTGAAGAAAACATGAGAGGCATCTGTTTTGAAGTTTGTGATGTGGTGCTTCACGCTGATGCCATCCACAGAGGAGGTGGTCAAGTCATTCCGACCGCTAGGAGGGTAATTTACGCTTCTCAGCTGACCGCCAAACCAAGACTTCTTGAGCCTGTGTACCTAGTGGAGATTCAGGCTCCTGAGCAAGCTCTTGGTGGTATCTACAGTGTTCTTAACCAGAAGCGTGGGCACGTCTTTGAGGAAATGCAGAGGCCCGGTACCCCTCTTTACAACATCAAGGCGTATCTCCCTGTCATTGAGTCTTTCGGGTTCTCGAGCACATTGAGAGCTGCAACTTCCGGGCAGGCGTTCCCACAGTGTGTTTTCGACCATTGGGACATGATGTCGTCGGATCCATTGGAACCTGGTTCCCAGGCTGCACAGTTAGTTGCAGATATCCGCAAGAGGAAGGGATTGAAGGAACAAATGACTCCATTGTCTGAGTTTGAGGACAAGCTGTAG 3297 46.47 MSKSQGPSSLKRKRPDSAHGSGGALIEHEKVLHDLICSKQSMGIWIGDIKRETKYSDSVVTKSLKSLQARGLVKLVEHYQNKGKKFYLSKDFEPSKELTGGNWYSDGKLDQEYINTLKGFCARMIQKLKVATIEGIVDSFKKSGASKVDLSREQIEEIVNALVLDNEVMEVKSTGSGEFDFIPVGKICYKCYAKGGVKGEPKTGAMASIPCGVCPRISHCTPDGIISPRTCVYYTKWLKGSAFLCSPSVHSPLIPRVKFTAEELRRIMDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMSDESLKSYKGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCVEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQTFQRVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDPATKKWTSKNTGSPTCKRGFVQFCYEPIKQIIATCMNDQKDKLWPMLQKLGVVMKSEEKDLMSKALMKRVMQTWLPASNALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYASAIRSCDPEGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQFITKNATLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCTMEESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLERSCRTVMSKSPNKHNRLYMEARPMEEGLAEAIDDGRIGPRDDPKVRSKILSEEFGWDKDLAKKIWCFGPETTGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSSTLRAATSGQAFPQCVFDHWDMMSSDPLEPGSQAAQLVADIRKRKGLKEQMTPLSEFEDKL 1098
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 32932713 32942531 + ClCG02G018290.2 Cla02g01791 267917
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g01791 1098 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 259 596 IPR027417 -
Cla02g01791 1098 SMART EFG_C_a 979 1068 IPR000640 -
Cla02g01791 1098 PANTHER - 257 1097 - -
Cla02g01791 1098 Pfam Elongation factor Tu GTP binding domain 272 597 IPR000795 GO:0003924|GO:0005525
Cla02g01791 1098 Pfam RNA polymerase Rpc34 subunit 130 238 IPR007832 GO:0005666|GO:0006383
Cla02g01791 1098 Pfam RNA polymerase Rpc34 subunit 27 127 IPR007832 GO:0005666|GO:0006383
Cla02g01791 1098 Gene3D - 825 977 IPR014721 -
Cla02g01791 1098 SUPERFAMILY Winged helix DNA-binding domain 28 89 IPR036390 -
Cla02g01791 1098 Gene3D - 258 492 IPR027417 -
Cla02g01791 1098 SMART EFG_IV_2 861 977 IPR005517 GO:0005525
Cla02g01791 1098 MobiDBLite consensus disorder prediction 1 22 - -
Cla02g01791 1098 Gene3D - 978 1098 - -
Cla02g01791 1098 Gene3D Elongation Factor G (Translational Gtpase), domain 3 741 818 - -
Cla02g01791 1098 TIGRFAM small_GTP: small GTP-binding protein domain 275 431 IPR005225 GO:0005525
Cla02g01791 1098 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 272 599 IPR000795 GO:0003924|GO:0005525
Cla02g01791 1098 CDD aeEF2_snRNP_like_IV 814 986 - -
Cla02g01791 1098 CDD EF2 275 485 - -
Cla02g01791 1098 Gene3D - 27 90 IPR036388 -
Cla02g01791 1098 Pfam Elongation factor Tu domain 2 649 722 IPR004161 GO:0005525
Cla02g01791 1098 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 313 328 IPR031157 -
Cla02g01791 1098 SUPERFAMILY EF-G C-terminal domain-like 982 1093 IPR035647 -
Cla02g01791 1098 CDD eEF2_snRNP_like_C 982 1060 - -
Cla02g01791 1098 CDD EF2_II 630 725 - -
Cla02g01791 1098 SUPERFAMILY Translation proteins 597 731 IPR009000 -
Cla02g01791 1098 PRINTS GTP-binding elongation factor signature 276 289 IPR000795 GO:0003924|GO:0005525
Cla02g01791 1098 PRINTS GTP-binding elongation factor signature 320 328 IPR000795 GO:0003924|GO:0005525
Cla02g01791 1098 PRINTS GTP-binding elongation factor signature 356 366 IPR000795 GO:0003924|GO:0005525
Cla02g01791 1098 PRINTS GTP-binding elongation factor signature 372 383 IPR000795 GO:0003924|GO:0005525
Cla02g01791 1098 PRINTS GTP-binding elongation factor signature 408 417 IPR000795 GO:0003924|GO:0005525
Cla02g01791 1098 Gene3D Translation factors 598 739 - -
Cla02g01791 1098 SUPERFAMILY Ribosomal protein S5 domain 2-like 817 981 IPR020568 -
Cla02g01791 1098 SUPERFAMILY EF-G C-terminal domain-like 739 815 IPR035647 -
Cla02g01791 1098 PANTHER TRANSLATION ELONGATION FACTOR-RELATED 257 1097 - -
Cla02g01791 1098 Pfam Elongation factor G C-terminus 979 1065 IPR000640 -
Cla02g01791 1098 CDD EF2_snRNP_III 742 814 - -
Cla02g01791 1098 Pfam Elongation factor G, domain IV 866 977 IPR005517 GO:0005525
Cla02g01791 1098 Pfam Elongation Factor G, domain III 742 804 IPR041095 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g01688 Cla-Chr2:31770480 Cla02g01791 Cla-Chr2:32932713 0 dispersed
Cla02g01791 Cla-Chr2:32932713 Cla02g01810 Cla-Chr2:33134579 0 dispersed
Cla02g01791 Cla-Chr2:32932713 Cla02g01793 Cla-Chr2:32950219 0 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g01791 K03234 - tcc:18594569 1651.34