Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g01793 ATGGCTCCAATGCTCGTACAAAATGCTCGTGAAGTTCCGGAATACGAGATCAATCCAAATGAGCTTGATTTTTCTAAGAGTGTGAACATTACAAAAGGAACTTTCCGCAGTGCTTCATGGCGTGGAATTCAAGTTGCTGTGAAGACACTAGGCGAGGAAGTTTTCACCGACGAGGATAAAGTGAAGGCATTTAGGGATGAACTTGCTTTACTTCAGAAGATACGGCATCCTAATGTTGTCCAATTTCTGGGAGCTGTAACACAAAGTAGTCCAATGATGATTGTCACAGAGTATTTGCCCCAGGGGGACCTTCATGCATTCTTGAAACGTAAAGGTTCCTTGAAGCTAGCAACAGTCGTAAAGTTTGCTCTTGACATTGCAAGGGGAATGAATTATTTGCATGAGCATAAACCTGAAGCAATAATCCATCGCGATCTTGAACCTTCAAACATACTGCGGGATGATTCTGGGCACCTGAAAGTCGCAGACTTTGGAGTTAGCAAACTTCTAAAATTTTCGAATAGGGTTAAAGAAGACAGACCTGTGGCTGTGACATGTCAGGACACTTCATGGCGATATGCGGCACCTGAGGTTTATAAAAATGAAGAATATGATACAAAAGTGGATGTATTTTCATTTTCTTTGATCTTGCAAGAGATGATAGAAGGCAATCCACCTTTTCCAACAATGCCAGAAAATGAAGTAGCCAAAGCTTATATAGCTAACGAACGCCCCCCATTTACGGCTCCACCAAAGCATTATGCACTCGGAATACAGGAGCTCATTCAGGAATGTTGGGATGAGAACCCGCATAAAAGACCCACGTTTCGGCAAATAATAAGAAGCATCCACAGACGAGAAATATCCTTCATCTTTATAGTTGATATAATAATGATGCCACAAAAAGACCTGATAAACTTGCAAATCAGGATTATGAAAGCATTGTGTACGAGATGGCATGATTTAGCGACCATTAACAATGATGTAAAACCAAATCCAGGTAGTCCGTATATGAAACAATTCAAGTACTTTGATTCCTTTCTTCATAAAGTTGTTAAAACAAGCATCTTTTATATCCCAATCGCAAACCCTAGGTGGCGCAAAAGGAAATGCTTCATTGATACCGCATATTCGGCGTCGCCATCACTTCCCACCACCTCTTATCCCTCCTCTCCCGCACTCTGTTTCGCTTCTTGTACTACTCTTTTGTGGAGGCTCAAGGGACAGTCTCTTCCTTTGCTCTCCCTTCATCGTCTCCCTGTTTCTTCTTTCCCTGTTACATATGCTTTTTTTCGGCAGTTAATAATCTCTAATTCTTGGACATCGGGAAGTTTGAAGACTTGTCAAGATGGTCAGTATGCTCTTCTCTTGACGATGTTAATTTTGCGATCTGGAAAGTACTTTTTCACTTTAATAATCATCTTTAATCTTTTCTGTGTTCAGGTGAAGTTTACAGCCGAGGAGCTTCGTAGGATTATGGACTTTAAGCATAACATTCGTAATATGTCTGTTATTGCTCACGTCGATCATGGAAAGTCGACACTTACAGACTCTCTTGTGGCTGCTGCGGGTATCATTGCACAAGAAGTTGCCGGTGATGTACGAATGACAGACACTCGCCAAGATGAGGCAGAGCGTGGTATCACCATTAAATCTACTGGAATCTCCCTCTACTATGAGATGTCTGATGAATCCTTGAAAAGTTACAAGGGAGAGAGACAGGGAAATGAATATCTTATCAATCTTATTGATTCACCCGGGCACGTTGACTTCTCATCTGAGGTTACAGCTGCTTTGCGTATTACCGATGGTGCCCTTGTTGTGGTGGATTGTGTCGAAGGTGTTTGTGTCCAAACAGAGACCGTGCTCCGTCAGGCTTTGGGAGAGAGGATTAGACCTGTCTTGACTGTTAACAAGATGGACAGGTGCTTCCTTGAACTCCAAGTGGATGGAGAAGAGGCTTATCAAACATTTCAGAGGGTGATAGAGAATGCCAATGTGATTATGGCCACATACGAGGATCCACTTCTTGGGGATGTTCAAGTGTACCCCGAGAAAGGAACAGTCGCTTTCTCTGCTGGTCTGCACGGTTGGGCGTTTACCCTGACTAACTTTGCGAAGATGTATGCCTCCAAGTTTGGAGTAGACGAGTCAAAGATGATGGAGAGACTTTGGGGTGAGAACTTCTTTGATCCTGCAACCAAGAAGTGGACGAGCAAGAACACTGGCTCTCCAACATGCAAGCGTGGGTTTGTCCAGTTCTGCTACGAACCCATCAAGCAGATCATTGCAACTTGCATGAACGATCAGAAGGACAAGCTATGGCCCATGTTGCAGAAGCTTGGAGTTGTGATGAAGTCTGAAGAGAAGGATCTGATGAGTAAAGCATTGATGAAGAGGGTCATGCAAACATGGCTCCCAGCAAGCAATGCTCTTTTGGAAATGATGATCTTTCATCTTCCATCCCCTGCCACGGCTCAAAAGTACCGTGTTGAGAATTTGTACGAGGGTCCACTAGATGATGCTTATGCGAGTGCCATTAGAAGTTGTGATCCTGAAGGACCTCTTATGCTTTATGTATCGAAGATGATTCCTGCATCAGACAAGGGCAGGTTCTTTGCCTTTGGACGTGTCTTCTCTGGGAAAGTTTCAACTGGTTTGAAAGTTAGAATTATGGGACCAAACTATGTTCCCGGCGAGAAGAAAGATTTGTATGTGAAGAGTGTCCAGAGAACTGTCATTTGGATGGGAAAGAAGCAAGAAACGGTGGAGGATGTGCCGTGTGGTAACACTGTTGCCATGGTTGGATTGGATCAATTCATCACAAAGAATGCTACTCTGACAAACGAGAAGGAAGTTGATGCCCATCCAATTCGAGCCATGAAATTTTCTGTATCGCCTGTGGTGCGTGTGGCTGTTCAGTGCAAGGTGGCATCTGATCTTCCCAAGCTCGTGGAAGGGCTTAAACGTCTGGCGAAGTCAGATCCTATGGTTGTATGTACAATGGAGGAATCTGGTGAGCACATTGTTGCCGGTGCTGGAGAACTGCATCTTGAGATCTGTCTGAAGGATTTGCAAGATGACTTCATGGGTGGAGCTGAGATCATAAAATCTGACCCTGTTGTCTCTTTCCGTGAAACTGTCCTTGAGAGGTCATGCCGCACGGTGATGAGTAAATCCCCCAACAAACACAATCGTCTATACATGGAAGCACGACCGATGGAGGAAGGACTGGCAGAAGCTATTGACGATGGCCGCATCGGACCACGGGATGACCCTAAAGTTAGGTCTAAAATCTTGTCAGAGGAGTTTGGTTGGGACAAAGATCTTGCTAAGAAGATTTGGTGCTTTGGTCCTGAGACTACCGGCCCTAACATGGTGGTTGATATGTGTAAGGGAGTTCAATACCTAAATGAAATCAAGGATTCCGTTGTCGCCGGTTTCCAGTGGGCGTCGAAAGAAGGTGCATTGGCTGAAGAAAACATGAGAGGCATCTGTTTTGAAGTTTGTGATGTGGTGCTTCACGCTGATGCCATCCACAGAGGAGGTGGTCAAGTCATTCCGACCGCTAGGAGGGTAATTTACGCTTCTCAGCTGACCGCCAAACCAAGACTTCTTGAGCCTGTGTACCTAGTGGAGATTCAGGCTCCTGAGCAAGCTCTTGGTGGTATCTACAGTGTTCTTAACCAGAAGCGTGGGCACGTCTTTGAGGAAATGCAGAGGCCCGGTACCCCTCTTTACAACATCAAGGCGTATCTCCCTGTCATTGAGTCTTTCGGGTTCTCGAGCACATTGAGAGCTGCAACTTCCGGGCAGGCGTTCCCACAGTGTGTTTTCGACCATTGGGACATGATGTCGTCGGATCCATTGGAACCTGGTTCCCAGGCTGCACAGTTAGTTGCAGATATCCGCAAGAGGAAGGGATTGAAGGAACAAATGACCCCACTTTCCGAGTTCGAGGACAAGCTGTAG 3972 45.14 MAPMLVQNAREVPEYEINPNELDFSKSVNITKGTFRSASWRGIQVAVKTLGEEVFTDEDKVKAFRDELALLQKIRHPNVVQFLGAVTQSSPMMIVTEYLPQGDLHAFLKRKGSLKLATVVKFALDIARGMNYLHEHKPEAIIHRDLEPSNILRDDSGHLKVADFGVSKLLKFSNRVKEDRPVAVTCQDTSWRYAAPEVYKNEEYDTKVDVFSFSLILQEMIEGNPPFPTMPENEVAKAYIANERPPFTAPPKHYALGIQELIQECWDENPHKRPTFRQIIRSIHRREISFIFIVDIIMMPQKDLINLQIRIMKALCTRWHDLATINNDVKPNPGSPYMKQFKYFDSFLHKVVKTSIFYIPIANPRWRKRKCFIDTAYSASPSLPTTSYPSSPALCFASCTTLLWRLKGQSLPLLSLHRLPVSSFPVTYAFFRQLIISNSWTSGSLKTCQDGQYALLLTMLILRSGKYFFTLIIIFNLFCVQVKFTAEELRRIMDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMSDESLKSYKGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCVEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQTFQRVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDPATKKWTSKNTGSPTCKRGFVQFCYEPIKQIIATCMNDQKDKLWPMLQKLGVVMKSEEKDLMSKALMKRVMQTWLPASNALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYASAIRSCDPEGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQFITKNATLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCTMEESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLERSCRTVMSKSPNKHNRLYMEARPMEEGLAEAIDDGRIGPRDDPKVRSKILSEEFGWDKDLAKKIWCFGPETTGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSSTLRAATSGQAFPQCVFDHWDMMSSDPLEPGSQAAQLVADIRKRKGLKEQMTPLSEFEDKL 1323
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 32950219 32963999 + ClCG02G018315.1 Cla02g01793 267919
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g01793 1323 Pfam Elongation factor G, domain IV 1091 1202 IPR005517 GO:0005525
Cla02g01793 1323 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 497 824 IPR000795 GO:0003924|GO:0005525
Cla02g01793 1323 PANTHER TRANSLATION ELONGATION FACTOR-RELATED 482 1322 - -
Cla02g01793 1323 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 538 553 IPR031157 -
Cla02g01793 1323 Pfam Elongation factor Tu GTP binding domain 497 822 IPR000795 GO:0003924|GO:0005525
Cla02g01793 1323 SUPERFAMILY Protein kinase-like (PK-like) 41 303 IPR011009 -
Cla02g01793 1323 CDD eEF2_snRNP_like_C 1207 1285 - -
Cla02g01793 1323 Gene3D Transferase(Phosphotransferase) domain 1 7 293 - -
Cla02g01793 1323 TIGRFAM small_GTP: small GTP-binding protein domain 500 656 IPR005225 GO:0005525
Cla02g01793 1323 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 484 821 IPR027417 -
Cla02g01793 1323 SUPERFAMILY Ribosomal protein S5 domain 2-like 1042 1206 IPR020568 -
Cla02g01793 1323 CDD STKc_MAP3K-like 30 283 - -
Cla02g01793 1323 SUPERFAMILY EF-G C-terminal domain-like 1207 1318 IPR035647 -
Cla02g01793 1323 ProSiteProfiles Protein kinase domain profile. 1 291 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla02g01793 1323 Gene3D - 1203 1323 - -
Cla02g01793 1323 CDD EF2_II 855 950 - -
Cla02g01793 1323 Gene3D - 1050 1202 IPR014721 -
Cla02g01793 1323 SMART EFG_IV_2 1086 1202 IPR005517 GO:0005525
Cla02g01793 1323 Pfam Protein tyrosine and serine/threonine kinase 29 282 IPR001245 GO:0004672|GO:0006468
Cla02g01793 1323 CDD aeEF2_snRNP_like_IV 1039 1211 - -
Cla02g01793 1323 Pfam Elongation factor Tu domain 2 874 947 IPR004161 GO:0005525
Cla02g01793 1323 PANTHER - 482 1322 - -
Cla02g01793 1323 SUPERFAMILY Translation proteins 822 956 IPR009000 -
Cla02g01793 1323 SUPERFAMILY EF-G C-terminal domain-like 964 1040 IPR035647 -
Cla02g01793 1323 CDD EF2 500 710 - -
Cla02g01793 1323 Gene3D Elongation Factor G (Translational Gtpase), domain 3 966 1043 - -
Cla02g01793 1323 Gene3D Translation factors 823 964 - -
Cla02g01793 1323 Pfam Elongation factor G C-terminus 1204 1290 IPR000640 -
Cla02g01793 1323 CDD EF2_snRNP_III 967 1039 - -
Cla02g01793 1323 Pfam Elongation Factor G, domain III 967 1029 IPR041095 -
Cla02g01793 1323 SMART EFG_C_a 1204 1293 IPR000640 -
Cla02g01793 1323 Gene3D - 483 717 IPR027417 -
Cla02g01793 1323 PRINTS GTP-binding elongation factor signature 581 591 IPR000795 GO:0003924|GO:0005525
Cla02g01793 1323 PRINTS GTP-binding elongation factor signature 633 642 IPR000795 GO:0003924|GO:0005525
Cla02g01793 1323 PRINTS GTP-binding elongation factor signature 501 514 IPR000795 GO:0003924|GO:0005525
Cla02g01793 1323 PRINTS GTP-binding elongation factor signature 545 553 IPR000795 GO:0003924|GO:0005525
Cla02g01793 1323 PRINTS GTP-binding elongation factor signature 597 608 IPR000795 GO:0003924|GO:0005525
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g02349 Cla-Chr1:37242729 Cla02g01793 Cla-Chr2:32950219 9.01E-139 dispersed
Cla02g01793 Cla-Chr2:32950219 Cla02g01810 Cla-Chr2:33134579 0 dispersed
Cla10g01587 Cla-Chr10:31345273 Cla02g01793 Cla-Chr2:32950219 5.59E-22 dispersed
Cla02g01791 Cla-Chr2:32932713 Cla02g01793 Cla-Chr2:32950219 0 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80363 PF00009 GTP_EFTU 5.80E-66 CL0023 Cla PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g01793 K03234 - tcc:18594569 1651.34