Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g01796 ATGGGAAGAGGTAAGATTGAAATAAAAAGAATTGAAAATACTACAAATCGTCAAGTTACCTTTTGCAAGAGAAGAAATGGATTGCTCAAAAAAGCTTATGAATTGTCTGTTCTTTGTGATGCTGAAGTTGCCCTCATCGTCTTCTCTACTCGTGGCCGTCTCTATGAATATGCAAATAATAGTGTTAGAGGAACAATTGAGAGGTACAAGAAAGCATTTGCTGACTCTTCCAATTCCGGATTATCAGTTGCGGAAGCTAATGTACAGTTTTACCAACAAGAAGCCTCCAAGCTGAAGAGACAGATTAGGGAAATTCAGAACTCAAACAGGCATATTCTGGGAGAAGCACTCAGCTCATTGTCATTAAAGGACCTCAAAAGTCTGGAGGGCAGATTGGAGAGAGGAATCAGCAAAGTTAGGGCCAAAAAGCTCTTGGTTCAGACTCTCTTGTGCTTTTCTTTTGGCAATGCATCGCTTTTGGTTTCCGGATACATGATGGAGGTGCTACAAATGTATCAACCTAGTTGTGATGTTTCAAACGAAACCTTGTGTGCAGAGATGGAATTCATGCAAAAACGGGAAATGGAGCTTCAGAACCACAACAACTATCTGCGAGCACAGATTGCTGAACACGAAAGAATACAACAACAGCAGCAACAACAAACGAACATGATGCAAAGGGCAACATATGAGAGTGTGGGAGGGCAATACGATGAGAATAGAAGTTATGGGGCTGTGGGACTTATGGATTCAGACACTCATTACGCCCATCAAGACCATCTCACTGCCCTTCAGCTTGTTTAA 804 41.67 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYEYANNSVRGTIERYKKAFADSSNSGLSVAEANVQFYQQEASKLKRQIREIQNSNRHILGEALSSLSLKDLKSLEGRLERGISKVRAKKLLVQTLLCFSFGNASLLVSGYMMEVLQMYQPSCDVSNETLCAEMEFMQKREMELQNHNNYLRAQIAEHERIQQQQQQQTNMMQRATYESVGGQYDENRSYGAVGLMDSDTHYAHQDHLTALQLV 267
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 32977982 32985319 + ClCG02G018350.2 Cla02g01796 267922
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g01796 267 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Cla02g01796 267 SUPERFAMILY SRF-like 2 73 IPR036879 GO:0003677|GO:0046983
Cla02g01796 267 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL1-RELATED 175 260 - -
Cla02g01796 267 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL1-RELATED 1 143 - -
Cla02g01796 267 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Cla02g01796 267 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Cla02g01796 267 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Cla02g01796 267 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Cla02g01796 267 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Cla02g01796 267 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Cla02g01796 267 ProSiteProfiles K-box domain profile. 88 214 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cla02g01796 267 PANTHER MADS BOX PROTEIN 175 260 - -
Cla02g01796 267 PANTHER MADS BOX PROTEIN 1 143 - -
Cla02g01796 267 Pfam K-box region 87 208 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cla02g01796 267 Gene3D - 14 76 IPR036879 GO:0003677|GO:0046983
Cla02g01796 267 Coils Coil 81 108 - -
Cla02g01796 267 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g01796 Cla-Chr2:32977982 Cla08g00042 Cla-Chr8:1179583 1.06E-60 dispersed
Cla01g02351 Cla-Chr1:37256979 Cla02g01796 Cla-Chr2:32977982 2.50E-76 wgd
Cla02g01796 Cla-Chr2:32977982 Cla03g00684 Cla-Chr3:8285530 2.68E-90 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60696 PF01486 K-box 1.60E-21 No_clan Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g01796 K09264 - csv:101217987 388.267