Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g01804 ATGGCAGCTTCATCAATGGCTCTCTCCTCCCCATCTCTCGCCGGCCAAGCCGTCAAATTATCCCCCACGACCTCCGACCTCCTGGGCGACGGTCGCATCACCATGAGAAAAACTGCCGGAAAGCCCAAGCCCATTTCCTCCGGAAGCCCATGGTACGGCCCAGATCGCGTCAAATACCTAGGCCCATTCTCTGGCGAGCCCCCTTCTTATTTGACTGGAGAATTCCCCGGCGATTACGGCTGGGACACCGCCGGTTTATCCGCCGACCCGGAAACTTTCGCGAAAAACCGTGAGCTGGAAGTGATCCACTCGAGATGGGCCATGCTCGGCGCTCTGGGCTGCGTCTTCCCGGAGCTGCTGTCTCGCAACGGAGTAAAATTCGGCGAAGCCGTGTGGTTCAAAGCTGGGTCTCAAATCTTTAGCGAGGGTGGGCTAGATTATTTGGGGAACCCGAGCCTGGTCCACGCTCAGAGCATTTTAGCCATTTGGGCTTGTCAAGTTGTGCTAATGGGTGCGGTTGAAGGGTATAGAATTGCGGGGGGGCCATTGGGGGAAATTACTGACCCGATTTACCCAGGTGGGAGCTTTGATCCATTGGGGCTTGCTGATGATCCAGAGGCGTTTGCGGAATTGAAAGTGAAGGAACTTAAGAATGGAAGATTGGCTATGTTTTCGATGTTTGGTTTCTTTGTACAGGCGATTGTGACTGGGAAAGGACCTTTGGAGAATTTGGCTGATCATTTGGCCGATCCTGTTAACAATAATGCTTGGGCTTATGCTACTAACTTTGTACCTGGAAAGTGA 804 53.11 MAASSMALSSPSLAGQAVKLSPTTSDLLGDGRITMRKTAGKPKPISSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEITDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 267
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 33078485 33079288 - ClCG02G018440.1 Cla02g01804 267930
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g01804 267 Pfam Chlorophyll A-B binding protein 67 233 IPR022796 -
Cla02g01804 267 PANTHER CHLOROPHYLL A-B BINDING PROTEIN 3, CHLOROPLASTIC 1 267 - -
Cla02g01804 267 SUPERFAMILY Chlorophyll a-b binding protein 50 264 - -
Cla02g01804 267 Gene3D Chlorophyll a/b binding protein domain 58 260 - -
Cla02g01804 267 MobiDBLite consensus disorder prediction 28 50 - -
Cla02g01804 267 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 1 267 IPR001344 GO:0009765|GO:0016020
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g02380 Cla-Chr1:37494120 Cla02g01804 Cla-Chr2:33078485 0 dispersed
Cla02g01804 Cla-Chr2:33078485 Cla10g01121 Cla-Chr10:25634840 5.66E-171 dispersed
Cla08g00194 Cla-Chr8:3955913 Cla02g01804 Cla-Chr2:33078485 6.56E-67 transposed
Cla11g01861 Cla-Chr11:32115231 Cla02g01804 Cla-Chr2:33078485 1.30E-60 transposed
Cla01g02379 Cla-Chr1:37491657 Cla02g01804 Cla-Chr2:33078485 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g01804 K08912 - csv:101213845 540.806