Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g01810 ATGAACCGTCTCATTCAGACCAACATCACGCAAAAACCTCAAACTGTCATGAGCAGAACTTTACGAGAAGGAAACGTGTTCTATGACTTTTCCCACGATAGTCTCCTCTTTTTTCGAGCCACAAAAAATGACTGGAAGGCGATCAAGTTGGCGTTACAAATTTATGAAAAAGGATTCATATTCGCCAGTGTTTTGCCTAGGTCTTCAGCTTTCTTTGTAATTCCCCATGTCCAATTAAAACTCTCGATTTCTTGTTGCTCCGCTCCCCAACTCTTTTCGCCATTGTTGGAGCTTCAATTTTCAGCCCAAACGCCTGATCGGTTGCCGAAAAGCTTTCGTTGTAAATTGGTGTTTTTATTTCAAATCAAGGAATTGTGCATGAGGCAATGCTATCAGTTTCTCTTGCTAGTGGTGTTTGCATGGTTCGTGAAAGGATTGAATGCTAGTGCAGGAGATATTGACCCACAATACAGTTCCCCTCAGTTTTATGAATACCTAGTTTTGCCCCCCAATTGTAATCTTGGTATTCCTTTTGCATTCAGTGATCACAATCTATGCTGCGTGCTCCTATTTTGTTCTGGCTTGACTTGTGTTAAACACTGTGAAGAAATAGGATGCATTGATCAGCAATGCTTTCCTCAGTGCAAATTCTCTTCGGATGGTGTTTCTGTTGATCAGCCTTGGTATATGCAAGAACCACTTTACTTAAGGTGGAAACAATGGGACTGCCAAAGTGATTGCCGTTACCATTGTATGGTTAAACGGGAGAGTCAAAGAGAAGCACTTGGTTATCATCCTGTTAAATATCATGGCAAATGGCCCTTCAAGCGTATATATGGGATCCAGGTTTGTTTTATCAAATTACTCGAGCAACTCCATGAACCTGTTTCTGTAGCATTCTCTGCCCTCAACCTTTCAATGCATTTTCATGGCTGGCTGTCCTTTTTTGTCCTTCTATATTACAAGTTACCTTTGAGACAAGACAAGAAGGCATATTATGAATTTGCCAGTTTGTGGCACATTTATGCGCTCTTTTCAATGAACTCTTGGTTTTGGAGTGCTGTTTTCCACAGTCGTGATGTGGATTTGACCGAGAAATTAGATTACTCATCTGCTGTGGCAGTACTTGGGTTTTCACTCATTCTGGCGATTCTAAGAAGTTTCAATGTGAGACATGAGGCTACCAGAGTTATGGTTGCAGCTCCTTTGCTTGCTTTTGCACTTACACATATCTTATACATCAACTTCTACGAACTGGATTATGTGTTCTTTCTAGTTCGTTTAGCACATTTACCGCATCATTTTTTCTTCATGCAAGCTATTCTTCTAAATTTTTTCCCCCATATTCAAACCAATCGGCCCATGCTTGGTGGCTGGAATATGATTGTTTGTGTTACCATGGGGGTTTCTCAACTTCTAATTTGGGCAATCTGGGCTGGTGTAACTCATCATCCTTCTCGCTGGAAACTGTGGACGGTGGTTGTGGGCGGTGGCTTAGCACTTCTACTGGAAATCTATGATTTTCCACCTGAGGAGCTTAAATTGTACCAGATTTTGATTGATTCAATTTTAGTTCTAAATAACAAAACTAGTTTTATGTTTCATAGATTTTATAATATTGATGTTAAAAACGAGTTTAGCTACGCGATTTTTAGATTTATGCTAACAATCTTATTTTGGGACATTGTCAAATTTGAAGACTTGTCAAGATGGTTAGTGAAGTTTACAGTTGAAGAGCTTCGTAGGATTATGGACTTCAAGCATAACATTCGTAATATGTCTGTTATTGCTCATGTCGATCATGGGAAGTCCACTCTCACAGATTCTCTTGTGGCTGCTGCTGGTATCATTGCTCAAGAAGTTGCGGGTGATGTTCGGATGACAGATACCCGTCAAGATGAGGCAGAACGGGGTATTACCATCAAATCGACTGGCATCTCCCTCTATTATGAGATGTCTGATGAATCATTGAAAAATTATAAGGGAGAGAGGCAGGGAAATGAGTACCTTATCAATCTTATTGATTCGCCTGGGCATGTTGACTTCTCATCCGAGGTTACAGCTGCTCTACGAATTACTGATGGTGCGCTTGTGGTGGTGGATTGTGTTGAAGGAGTTTGTGTCCAAACAGAGACAGTGCTTCGTCAGGCGTTGGGAGAGAGGATTCGTCCTGTGTTGACAGTTAACAAGATGGACAGATGCTTCCTTGAGCTTCAAGTAGATGGGGAAGAGGCTTATCAGACCTTCTCGAGAGTTATTGAGAATGCTAATGTGATCATGGCTACATATGAGGATCCACTTCTTGGTGATGTCCAAGTGTATCCTGAGAAGGGAACAGTTGCTTTCTCTGCTGGTTTGCACGGTTGGGCTTTCACCCTGACTAACTTTGCAAAGATGTATGCCTCTAAATTTGGAGTAGATGAGGCTAAGATGATGGAGAGGCTTTGGGGTGAGAACTTCTTTGACCCTGCCACCAAGAAATGGACCACCAAGAACACTGGATCTGCAACGTGCAAGCGTGGATTTGTTCAGTTCTGCTATGAACCTATCAAGCAGATCATTGCAACTTGTATGCATGACCAGAAGGACAAGCTATGGCCTATGTTGCAGAAACTTGGAGTTGTCATGAAGTCTGAAGAGAAGGATCTGATGGGAAAAGCATTGATGAAGCGAGTCATGCAAACGTGGCTCCCAGCAAGCAATGCTCTTTTGGAAATGATGATCTTTCATCTCCCTTCCCCTGCCACGGCCCAAAAGTATCGTGTGGAGAATTTGTATGAGGGTCCACTAGATGATGTGTATGCAAGTGCCATCAGAAGTTGTGACCCTGAGGGACCTCTTATGCTTTATGTATCAAAGATGATTCCTGCATCGGACAAGGGCAGGTTCTTTGCCTTTGGTCGGGTCTTCTCTGGGAGGGTTTCAACTGGTTTGAAAGTTAGAATCATGGGTCCCAACTATGTTCCTGGTGAGAAGAAAGACTTGTATGTTAAGAGCGTCCAGAGAACTGTCATTTGGATGGGAAAGAAGCAAGAAACTGTGGAGGATGTGCCTTGTGGTAACACCGTTGCCATGGTTGGATTGGATCAATTCATCACAAAGAATGCTACTCTGACAAACGAGAAGGAAGTTGATGCTCATCCAATTCGAGCCATGAAATTTTCTGTATCTCCCGTTGTGCGTGTGGCTGTTCAGTGCAAGGTGGCATCTGATCTTCCCAAGCTCGTGGAAGGGCTTAAACGTCTGGCGAAGTCAGATCCTATGGTTGTGTGTACCATGGAGGAATCTGGTGAGCACATTGTTGCTGGTGCCGGAGAACTACATCTTGAGATCTGTCTGAAGGATTTGCAAGAGGATTTCATGGGTGGAGCTGAGATCATAAAATCTGACCCTGTTGTCTCTTTCCGTGAAACCGTCCTTGAGAGGTCATGCCGCACGGTGATGAGTAAATCCCCCAACAAACACAATCGTCTATACATGGAAGCACGACCCATGGAGGAAGGACTGGCAGAGGCTATCGATGATGGCCGCATTGGACCACGAGATGATCCTAAAGTTCGTTCTAAAATTTTGTCGGAGGAATTCGGTTGGGACAAAGATCTCGCTAAGAAGATTTGGTGCTTTGGGCCTGAGACTACTGGCCCCAACATGGTTGTTGATATGTGTAAGGGAGTTCAATATCTGAATGAAATCAAGGATTCTGTTGTTGCCGGTTTCCAATGGGCCTCTAAAGAAGGTGCATTGGCCGAAGAAAACATGAGAGGCATCTGTTTTGAAGTGTGCGATGTGGTTCTTCATGCTGATGCCATCCACAGAGGAGGAGGTCAAGTCATTCCCACAGCTAGGAGGGTAATTTACGCTTCTCAGTTGACAGCCAAACCCAGACTTCTTGAGCCAGTATACTTGGTGGAAATTCAAGCTCCAGAGCAAGCTCTTGGAGGTATCTACAGTGTTCTTAACCAGAAGCGTGGACACGTATTTGAGGAAATGCAGAGGCCCGGTACCCCTCTTTACAACATCAAGGCATATCTCCCCGTCATCGAGTCATTCGGATTCTCGAGCACTCTGAGAGCTGCAACGTCTGGACAGGCATTCCCACAGTGTGTGTTTGACCATTGGGACATGATGTCTTCAGATCCATTAGAAAGTGGGTCTCAAGCTGCGCAGTTGGTTGCTGATATCAGGAAGAGGAAGGGATTGAAGGAGCAGATGACTCCATTGTCCGAGTTCGAAGACAAGCTATAA 4245 43.82 MNRLIQTNITQKPQTVMSRTLREGNVFYDFSHDSLLFFRATKNDWKAIKLALQIYEKGFIFASVLPRSSAFFVIPHVQLKLSISCCSAPQLFSPLLELQFSAQTPDRLPKSFRCKLVFLFQIKELCMRQCYQFLLLVVFAWFVKGLNASAGDIDPQYSSPQFYEYLVLPPNCNLGIPFAFSDHNLCCVLLFCSGLTCVKHCEEIGCIDQQCFPQCKFSSDGVSVDQPWYMQEPLYLRWKQWDCQSDCRYHCMVKRESQREALGYHPVKYHGKWPFKRIYGIQVCFIKLLEQLHEPVSVAFSALNLSMHFHGWLSFFVLLYYKLPLRQDKKAYYEFASLWHIYALFSMNSWFWSAVFHSRDVDLTEKLDYSSAVAVLGFSLILAILRSFNVRHEATRVMVAAPLLAFALTHILYINFYELDYVFFLVRLAHLPHHFFFMQAILLNFFPHIQTNRPMLGGWNMIVCVTMGVSQLLIWAIWAGVTHHPSRWKLWTVVVGGGLALLLEIYDFPPEELKLYQILIDSILVLNNKTSFMFHRFYNIDVKNEFSYAIFRFMLTILFWDIVKFEDLSRWLVKFTVEELRRIMDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMSDESLKNYKGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCVEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQTFSRVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDEAKMMERLWGENFFDPATKKWTTKNTGSATCKRGFVQFCYEPIKQIIATCMHDQKDKLWPMLQKLGVVMKSEEKDLMGKALMKRVMQTWLPASNALLEMMIFHLPSPATAQKYRVENLYEGPLDDVYASAIRSCDPEGPLMLYVSKMIPASDKGRFFAFGRVFSGRVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQFITKNATLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCTMEESGEHIVAGAGELHLEICLKDLQEDFMGGAEIIKSDPVVSFRETVLERSCRTVMSKSPNKHNRLYMEARPMEEGLAEAIDDGRIGPRDDPKVRSKILSEEFGWDKDLAKKIWCFGPETTGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSSTLRAATSGQAFPQCVFDHWDMMSSDPLESGSQAAQLVADIRKRKGLKEQMTPLSEFEDKL 1414
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 33134579 33148945 - ClCG02G018490.2 Cla02g01810 267936
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g01810 1414 SMART EFG_IV_2 1177 1293 IPR005517 GO:0005525
Cla02g01810 1414 SUPERFAMILY Ribosomal protein S5 domain 2-like 1133 1297 IPR020568 -
Cla02g01810 1414 CDD EF2_snRNP_III 1058 1130 - -
Cla02g01810 1414 SUPERFAMILY EF-G C-terminal domain-like 1055 1131 IPR035647 -
Cla02g01810 1414 Pfam Elongation factor Tu domain 2 965 1038 IPR004161 GO:0005525
Cla02g01810 1414 CDD EF2 591 801 - -
Cla02g01810 1414 SUPERFAMILY EF-G C-terminal domain-like 1298 1409 IPR035647 -
Cla02g01810 1414 Gene3D Translation factors 914 1055 - -
Cla02g01810 1414 CDD EF2_II 946 1041 - -
Cla02g01810 1414 Gene3D Elongation Factor G (Translational Gtpase), domain 3 1057 1134 - -
Cla02g01810 1414 SMART EFG_C_a 1295 1384 IPR000640 -
Cla02g01810 1414 Gene3D - 1141 1293 IPR014721 -
Cla02g01810 1414 CDD eEF2_snRNP_like_C 1298 1376 - -
Cla02g01810 1414 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 588 915 IPR000795 GO:0003924|GO:0005525
Cla02g01810 1414 Pfam Elongation factor G, domain IV 1182 1293 IPR005517 GO:0005525
Cla02g01810 1414 SUPERFAMILY Translation proteins 913 1047 IPR009000 -
Cla02g01810 1414 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 575 912 IPR027417 -
Cla02g01810 1414 Pfam Per1-like family 440 510 IPR007217 GO:0006506
Cla02g01810 1414 Pfam Per1-like family 233 423 IPR007217 GO:0006506
Cla02g01810 1414 Gene3D - 1294 1414 - -
Cla02g01810 1414 Pfam Elongation factor Tu GTP binding domain 588 913 IPR000795 GO:0003924|GO:0005525
Cla02g01810 1414 PRINTS GTP-binding elongation factor signature 672 682 IPR000795 GO:0003924|GO:0005525
Cla02g01810 1414 PRINTS GTP-binding elongation factor signature 688 699 IPR000795 GO:0003924|GO:0005525
Cla02g01810 1414 PRINTS GTP-binding elongation factor signature 724 733 IPR000795 GO:0003924|GO:0005525
Cla02g01810 1414 PRINTS GTP-binding elongation factor signature 636 644 IPR000795 GO:0003924|GO:0005525
Cla02g01810 1414 PRINTS GTP-binding elongation factor signature 592 605 IPR000795 GO:0003924|GO:0005525
Cla02g01810 1414 PANTHER - 572 1413 - -
Cla02g01810 1414 Pfam Elongation Factor G, domain III 1058 1120 IPR041095 -
Cla02g01810 1414 PANTHER TRANSLATION ELONGATION FACTOR-RELATED 572 1413 - -
Cla02g01810 1414 CDD aeEF2_snRNP_like_IV 1130 1302 - -
Cla02g01810 1414 TIGRFAM small_GTP: small GTP-binding protein domain 591 747 IPR005225 GO:0005525
Cla02g01810 1414 Gene3D - 574 808 IPR027417 -
Cla02g01810 1414 Pfam Elongation factor G C-terminus 1295 1382 IPR000640 -
Cla02g01810 1414 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 629 644 IPR031157 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g01791 Cla-Chr2:32932713 Cla02g01810 Cla-Chr2:33134579 0 dispersed
Cla02g01793 Cla-Chr2:32950219 Cla02g01810 Cla-Chr2:33134579 0 dispersed
Cla02g01810 Cla-Chr2:33134579 Cla09g00996 Cla-Chr9:10481769 2.87E-130 dispersed
Cla06g00237 Cla-Chr6:2926862 Cla02g01810 Cla-Chr2:33134579 2.58E-34 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g01810 K03234 - csv:101208886 1649.8