Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g01813 ATGGACGCGGCCAAGGAGGAGTTTCTCAAGGAGTTCGGTCGAGACTACGGCTATCCCGGCGGTCCAAAAACCATCGATGAAATTCGAGCCACTGAATTTAAGCGCCTAGGTGGTATGGCCTACTTGGACCACGCAGCAGCAACTTTGTATTCCGAGCTACAAATGGAGGCGATCTTCAAAGATCTCACTTCTAATATATATGGAAATCCTCATAGCCAAAGTGATTCTAGCTTTGCCACTTCTGACATTGTAAGGAATGCCCGTCAACAGGTCCTTGACTATTTCAAAGCATCTCCTAAAGACTACAAATGCATATTTACTTCTGGTGCAACAGCAGCACTAAAATTAGTTGGGGAAGCCTTCCCGTGGAGTCATCAGAGCAGCTTTGTGTACACAATGGAGAATCACAACAGCGTTCTTGGAATCAGAGAATATGCTCTTGAACAAGGAGCTCAAGCCTATGCCATAGATATTGAAGATGCAGAACATGATGCATTCACAGGAAATCTTGCATCAGTGCAAGCAACAAAGCACCAAATACTAAGGAGAAATGAAGCCAAGTTTCTGGATAAAGATCATACAGGCAGTGCATATAACTTGTTTGCCTTCCCTTCAGAGTGCAATTTCTCTGGTTCGAAATTTAGCCTTGAATTGGTGAAGATTGTTAAAGAAGATTCAATTAGATATTCTGATGGCTCTCCATCTTTTAATGGACGCTGGAAAGTTTTGATCGATGCTGCAAAAGGATGTGCCACAGAACCCCCAGATTTATCCAAATATCCTGCTGATTTTGTTGTTATCTCTTTCTATAAGCTGTTTGGGTATCCAACTGGACTTGGAGCTCTCATAGTTCATACGGATGCTGCCAAGTTATTGAAGAGAACATACTTCAGTGGAGGCACCGTTGCTGCTTCAATTGCTGACATTGACTATGTCAAACGGAGAGAGGGCGTTGAGGAGCTCTTTGAAGATGGTACAATCTCATTCCTGAGCATCGCCTCTCTATGCCATGGGTTCAAAGTTCTAAATTCTCTAACTATACCTGCAATATCTCGGCATACTTCATCACTTGCCACGTATTTGAGGAACATCCTTGTGGCCTTGAGGCATGCAAATGGAAAAAGCGTATGCACCCTCTATGGAAGTTGCTCTTCCAAGACACTATGTAACAAAATGGGTCCGGTAGTCTCATTCAACTTGAGACAACCAGATGGATCCTGGGTTGGACATCGAGAAGTGGAAAAGCTGGCCTCTCTGTCTGGGATTCAGTTAAGGACAGGATGTTTTTGTAATCCTGGTGCATGTGCAAAATATCTTGGTCTATCTCATTTGGATTTTGCTACAAATATTGAGGCAGGCCATATCTGCTGGGATGATAATGATATAATTAATGGAAAACCAACTGGTGCTGTGAGAGTATCCTTGGGATACATGTCAACTTATGAAGATGTCAAGAAATTCATTGATTTTGTGGCAACTTCCTTTGTCTCTACTCGAACTCATGCTAGACATGGATTAGAATTTTGCGGAAGGTCCATCCATTTCACAGACATAGGTTTTAAGAACAGATATTCAGCTTCTGGATTTGACCTCAAGTCTATTACTGTCTATCCAATCAAATCATGTGCAGGATTCAGCATGGATAGATGGCCGTTAAGTAGTCGAGGGCTTCTTCATGATCGGGAGTGGCTTCTTCAAAGCCTGACGGGGGAAACTCTTACACAGAAGAAGGTTCCTGAAATGTCACTTGTACGTACTTATATTGACCTCAGTCAGGGAATATTGTTTATTGACTCCCCACGTTGCAAAGAGAGACTGCAGATCACCCTGAATTCAAATCCTTTCAATGGCAAGAGAGAAGAAATAAGTTTGCATGGTCAGATATATCAAGTCCAGGGTTACAACAAAGAAGTTGATACTTGGTTTAGTGCAGCTATTGGTCGACCATGTACTTTGTTGCGGCATATAAATTCCAGTCATTGTGCCAGCTTGTGTGAGAGAGATGGTGTTGGTACCTGTAGAGAATCACGAAATCGCTTGAATTTTCCCAATGAAGCACAGTTCTTGCTGGTATCTGAGGAGAGTGTATCAGACCTCAATAACAGATTGAATTCAAATGTTGGAAAGGACGTTCGTAGAACATCACTTCAAGTTAATCCTATGAGGTTCCGGCCAAATCTTGTCATATCTGGAGGCAGACCTTATGCTGAAGATGAGTGGAGAAATATTAAAATTGGCAACAAGTACTTCAGATCGTTAGGTGGATGCAACCGTTGCCAGATGATCAATTTTGTTATTGATGCTGAACAAGTCCAGAAGACAAATGAACCTTTAGCTACTTTAGCATCATACCGGAGGGTGAAGGGGAAAATTTTGTTTGGGGTACTGTTGAGATATGAATGTGAGGCTGAAGAAGGGAAGACTGGTGACTTATGGCTTCAGGTTGGAGAAAGTATAATCCCTGATTCCGAATAG 2475 42.34 MDAAKEEFLKEFGRDYGYPGGPKTIDEIRATEFKRLGGMAYLDHAAATLYSELQMEAIFKDLTSNIYGNPHSQSDSSFATSDIVRNARQQVLDYFKASPKDYKCIFTSGATAALKLVGEAFPWSHQSSFVYTMENHNSVLGIREYALEQGAQAYAIDIEDAEHDAFTGNLASVQATKHQILRRNEAKFLDKDHTGSAYNLFAFPSECNFSGSKFSLELVKIVKEDSIRYSDGSPSFNGRWKVLIDAAKGCATEPPDLSKYPADFVVISFYKLFGYPTGLGALIVHTDAAKLLKRTYFSGGTVAASIADIDYVKRREGVEELFEDGTISFLSIASLCHGFKVLNSLTIPAISRHTSSLATYLRNILVALRHANGKSVCTLYGSCSSKTLCNKMGPVVSFNLRQPDGSWVGHREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHLDFATNIEAGHICWDDNDIINGKPTGAVRVSLGYMSTYEDVKKFIDFVATSFVSTRTHARHGLEFCGRSIHFTDIGFKNRYSASGFDLKSITVYPIKSCAGFSMDRWPLSSRGLLHDREWLLQSLTGETLTQKKVPEMSLVRTYIDLSQGILFIDSPRCKERLQITLNSNPFNGKREEISLHGQIYQVQGYNKEVDTWFSAAIGRPCTLLRHINSSHCASLCERDGVGTCRESRNRLNFPNEAQFLLVSEESVSDLNNRLNSNVGKDVRRTSLQVNPMRFRPNLVISGGRPYAEDEWRNIKIGNKYFRSLGGCNRCQMINFVIDAEQVQKTNEPLATLASYRRVKGKILFGVLLRYECEAEEGKTGDLWLQVGESIIPDSE 824
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 33189636 33213249 - ClCG02G018530.2 Cla02g01813 267939

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g01813 824 SUPERFAMILY PLP-dependent transferases 32 492 IPR015424 -
Cla02g01813 824 Pfam MOSC domain 679 819 IPR005302 GO:0003824|GO:0030151|GO:0030170
Cla02g01813 824 Pfam MOSC N-terminal beta barrel domain 530 649 IPR005303 -
Cla02g01813 824 Pfam Aminotransferase class-V 41 160 IPR000192 -
Cla02g01813 824 Pfam Aminotransferase class-V 241 487 IPR000192 -
Cla02g01813 824 Gene3D Aspartate Aminotransferase, domain 1 341 497 IPR015422 GO:0003824
Cla02g01813 824 PANTHER MOLYBDENUM COFACTOR SULFURASE 18 799 - -
Cla02g01813 824 Gene3D - 55 340 IPR015421 GO:0003824
Cla02g01813 824 SUPERFAMILY MOSC N-terminal domain-like 531 656 - -
Cla02g01813 824 PANTHER MOLYBDOPTERIN COFACTOR SULFURASE MOSC 18 799 - -
Cla02g01813 824 SUPERFAMILY PK beta-barrel domain-like 688 785 IPR011037 -
Cla02g01813 824 Hamap Molybdenum cofactor sulfurase [MOCOS]. 15 821 IPR028886 GO:0006777|GO:0008265
Cla02g01813 824 ProSiteProfiles MOSC domain profile. 662 822 IPR005302 GO:0003824|GO:0030151|GO:0030170
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g01813 K15631 ABA3; molybdenum cofactor sulfurtransferase [EC:2.8.1.9] - csv:101220625 1524.22
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g02520 Cla-Chr1:38877307 Cla02g01813 Cla-Chr2:33189636 6.77E-20 dispersed
Cla02g01813 Cla-Chr2:33189636 Cla05g01995 Cla-Chr5:31731957 2.64E-16 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g1040 . . . . . . . . . . . . . . . . . . . . . . . . Cla02g01813 Cam02g1918 Cec02g1939 Cco02g1983 Clacu02g1900 Cmu02g1847 Cre02g2162 . . . . . . . . Blo15g00605 . . . . . . Bma12g00598 Sed14g1679 . . . . . . . . Bhi10g00965 Tan05g0609 Cmetu11g0122 . . . . . . . . . . . . Csa06g01170 Chy11g01023 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005491 1 7 1 1 1 1 1 1 1 2 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 4 1 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla02g01813 Cla_Chr02 FPKM 43.868107 40.721272 54.510574 56.722454 37.814339 40.412361 44.285858 81.838097 80.499626 91.350151