Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g01814 ATGAAGGAGATCGGTGGAAGAAAACAAGGCACATCTCTTTCACCATGTGCAGCTTGTAAGCTTCTCCGTCGTCGATGTGCTCAAGATTGTGTTTTCGCCCCGTATTTCCCCGCCGACGAACCTCATAAATTTGCTAGCGTCCATAAGGTCTTCGGAGCTAGTAATGTTAACAAGATGTTGCAGGAGCTACCAGAGCAACAACGAAGCGATGCAGTTAGTTCAATGGTGTACGAGGCAAACGCGAGGGTGCGAGATCCGGTGTACGGTTGCGTTGGAGCAATATCGTCGCTACAACAACAAATCGATCTCTTGCAAACACAACTAGCAATAGCGCAAGCGGAGGTGGTTCACATGAGGATGCGCCAATTCCCATCTACCTCCTGCAACCCGACTGCGGGCCACTCGCCGGAAACCACCTCACCCTCCGGCAAGATGAACATTCCGGCGCCAAACAAGTCCTATTTTTCCATGGACATGGTTGACCACGACAACATGGGGGAGTCCTTGTGGTCGTCGTGCTAG 522 51.53 MKEIGGRKQGTSLSPCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKMLQELPEQQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDLLQTQLAIAQAEVVHMRMRQFPSTSCNPTAGHSPETTSPSGKMNIPAPNKSYFSMDMVDHDNMGESLWSSC 173
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 33227293 33229852 + ClCG02G018540.1 Cla02g01814 267940
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g01814 173 MobiDBLite consensus disorder prediction 124 146 - -
Cla02g01814 173 Coils Coil 94 114 - -
Cla02g01814 173 Pfam Lateral organ boundaries (LOB) domain 15 112 IPR004883 -
Cla02g01814 173 ProSiteProfiles LOB domain profile. 14 115 IPR004883 -
Cla02g01814 173 PANTHER LOB DOMAIN-CONTAINING PROTEIN 3 2 169 - -
Cla02g01814 173 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 2 169 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g01814 Cla-Chr2:33227293 Cla07g00427 Cla-Chr7:5704730 1.62E-59 dispersed
Cla10g01326 Cla-Chr10:28218498 Cla02g01814 Cla-Chr2:33227293 2.36E-47 dispersed
Cla10g01510 Cla-Chr10:30343813 Cla02g01814 Cla-Chr2:33227293 3.30E-39 dispersed
Cla11g00556 Cla-Chr11:6297484 Cla02g01814 Cla-Chr2:33227293 4.07E-49 dispersed
Cla01g00888 Cla-Chr1:11254759 Cla02g01814 Cla-Chr2:33227293 3.76E-77 transposed
Cla02g01814 Cla-Chr2:33227293 Cla09g02200 Cla-Chr9:39611639 3.65E-64 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60700 PF03195 LOB 1.00E-43 No_clan Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g01814 - - csv:101220394 318.931