Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g01816 ATGTTTCTCGCAGGAAAGGTCGAAGAAACCCCTCGCCCATTGAAGGATGTTATCATGGTCTCATATGAAATCATCAACAAAAAGGATCCTACTGCAGCCCAGAAGATTAGGCAAAAGGAGGTGTATGAACGGCAAAAAGAGTTAATTTTACTTGGGGAGAGAGTTGTTCTCGCAACTCTTGGTTTTGATCTTAATGTGCACCATCCCTACAAACCCCTTGTCGAGGCAATTAAAAAATTCAAAGTTGCTCAAAATGCCTTGGCTCAGGTAGCTTGGAATTTCGTCAATGATGGATTGCGGACATCTCTTTGCTTGCAATTTAAGCCTCACCATATTGCGGCCGGTGCCATTTTCCTTGCTGCCAAATTTCTCAAAGTTAAACTCCCATCAGATGGGGAAAAGGTGTGGTGGCAAGAGTTTGATGTCACCCCACGGCAATTGGAGGAAGTCAGCAATCAAATGTTAGAACTTTATGAACAAAATCGATTGCCGCCTTCTGGCGAAGCTGATGGAAGCATTGGAGGTGGTCCCACTAATCAAACCCCTACAAAAGCTCCTACCAACAGCGAAGAACGTGCCGTAGCAGACAATCATGCACTTGGTGCAGGTGACCAGCCATCAAGAGCAATGCAGAATCATAGTATTGAAAGTTCGAGCGTAGATTTTAGAAGTCCTTCCAATCACAAAACAGGTAGTGAATCTAAGGTTAGACACGAGATGGAGCCATCGGCTTTCCATGACAAAGGAAACGCTCTAAACTCGGTAAAGCATCAGTCAGAGGGATTGGTTGAGCAAGACCATGGAAATGATATGAAAATAAATGAAGCAACAACAAGGGATGCAATGGAACTGAAAGACAAACATGTAATTCGAAATATAGATTTTAGAGAAGGTACACTTGGCAAATCTCAGGACGTTATCAAAAAAATTGATAAGGACAAAGTAAAGGCTGCGCTTGAGAAACGAAGGAAGTCTCTTGGCAGCATGACCCAGAAAAAAGAATTGATGGATGAGGATGATCTCATTGAAAGGGAGTTGGAAGCTGGTGTTGAGATGGCTGTTGGCAGTGAGAAAAACAAGCGAGAACAGAGGCAAAGTTGGAATAAGTCATCGAATAAACAAGAATATGAGGATTCATATCAAGACAAACATCGAGAGGACGATAAAGACGAGCATCCTCAACGAACGCGACAGTCATTATATAATCTAGATTCTAGCAACATAGAAGAAGGGGAGTTTGCAAATGCTAATGAAGTAGACCAAACCAATGAACAAAAGAGAGTACGGCAATTAATTAATCGATCGCAAGTTATTCCCTTTTGTGGAGAATTTTTCGTTTTTGAGATCGATCGACTCGATCTTGCGCGTAAAATCACCTCCATGGCGATTGCTTCTCGTGTGTCGAATCTTGAAGCTGACATGATAAGGATGAAGCACAAGCTCAAAGAGAAGGAAAAAACCATTTATGACCTACAGGAGAAGTTGTCTCACCTCGAGCACGCGAACCAGGAAGCTGAATCTAGGTTGAAGATTGCGCTTGATGATAATATGAGGCTTTCCAGGGAACGGGATTCACTATCAATGACTTCAAAGAAACTTGGACGTGATTTGGCAAAGCTGGAGACATTTAAAAGACAACTTATGCTATCATTGAGTGATGAATCCTCTCAAACTGAAACTGTTGATATTGGGACCTGTGATCAAGCAGTTCCGAAAACATATACTGACAAGGAAACGAGAAGCACAATGGATGAAGGAAAACATATTGGACAGAGATTTTCATCGCCGTATATCACCCCAAGGCTCACTCCATCTGCAACTCCAAAAATTATTTCAACGAGTGTATCCCCCAGAGGGTATTCCACCGTTGCTTCTCCACAAATAACGTCTGGTTCAACTTCTCCAACAAAACCCTCATATGATGGACGGATTGCACTATCTCCATGGTACCCATCAAGCCAGCAGTCTTCAGCAGCAAGTTCTCCTCCTCGTTCTCGTCAACTGGCTGGCCGCCCTGCTCGAGTGGATGGCAAGGAATTTTTCCGCTTAGCCAGGAGTCGTCTGCAATACGAGCAGTTTAGTGCCTTCCTTTCGAACATAAAGGAACTCAATGCTCAAAAGCAGACTAGAGAGGAAACTTTAAGAAAAGCAGAAGAGATATTTGGGACAGATAACAAAGATCTTTTTCTGTCATTTCAAGGATTGCTTAACCGCAATACTCACTATGTTATTGTAAAGTATAAAAGATCAAACCCTGTTGGAGTTGAAACTTCTTTTTTCTGTAGAAACGATGAGTTTGGTTTTTTGAAGATTGTAGCATCTAAAGCTGCAGCCAGTCTCTGTGACAACTCTATTTGGGGAAAGGGCTGGCTTGCAAGAGAACCAGAAAAGTTATCATCATATGCTCCAAAATCAGCGTACGTTCACTTGCAAGCTATCTGCTCCATCACAACGCCAACTTGTCTAGTCAGGCAAAACACAGAGGCTGACGGAAAGATAAGATTTTGGTCAAAAGAATCTGCAAAAATGGCTGTCACTAGTTTTGATAAGATTGAGGTTCGCAAGTTGTTCCTTCTCTTTCGGCATAAATATGAGGTTGAATAA 2604 42.28 MFLAGKVEETPRPLKDVIMVSYEIINKKDPTAAQKIRQKEVYERQKELILLGERVVLATLGFDLNVHHPYKPLVEAIKKFKVAQNALAQVAWNFVNDGLRTSLCLQFKPHHIAAGAIFLAAKFLKVKLPSDGEKVWWQEFDVTPRQLEEVSNQMLELYEQNRLPPSGEADGSIGGGPTNQTPTKAPTNSEERAVADNHALGAGDQPSRAMQNHSIESSSVDFRSPSNHKTGSESKVRHEMEPSAFHDKGNALNSVKHQSEGLVEQDHGNDMKINEATTRDAMELKDKHVIRNIDFREGTLGKSQDVIKKIDKDKVKAALEKRRKSLGSMTQKKELMDEDDLIERELEAGVEMAVGSEKNKREQRQSWNKSSNKQEYEDSYQDKHREDDKDEHPQRTRQSLYNLDSSNIEEGEFANANEVDQTNEQKRVRQLINRSQVIPFCGEFFVFEIDRLDLARKITSMAIASRVSNLEADMIRMKHKLKEKEKTIYDLQEKLSHLEHANQEAESRLKIALDDNMRLSRERDSLSMTSKKLGRDLAKLETFKRQLMLSLSDESSQTETVDIGTCDQAVPKTYTDKETRSTMDEGKHIGQRFSSPYITPRLTPSATPKIISTSVSPRGYSTVASPQITSGSTSPTKPSYDGRIALSPWYPSSQQSSAASSPPRSRQLAGRPARVDGKEFFRLARSRLQYEQFSAFLSNIKELNAQKQTREETLRKAEEIFGTDNKDLFLSFQGLLNRNTHYVIVKYKRSNPVGVETSFFCRNDEFGFLKIVASKAAASLCDNSIWGKGWLAREPEKLSSYAPKSAYVHLQAICSITTPTCLVRQNTEADGKIRFWSKESAKMAVTSFDKIEVRKLFLLFRHKYEVE 867
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 33254295 33263095 - ClCG02G018560.2 Cla02g01816 267942

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g01816 867 MobiDBLite consensus disorder prediction 162 238 - -
Cla02g01816 867 SUPERFAMILY Cyclin-like 1 66 IPR036915 -
Cla02g01816 867 PANTHER CYCLIN 1 202 IPR043198 GO:0006357|GO:0016538
Cla02g01816 867 PANTHER CYCLIN 205 391 IPR043198 GO:0006357|GO:0016538
Cla02g01816 867 SUPERFAMILY Cyclin-like 67 163 IPR036915 -
Cla02g01816 867 Gene3D - 1 64 - -
Cla02g01816 867 MobiDBLite consensus disorder prediction 173 190 - -
Cla02g01816 867 Gene3D - 66 166 - -
Cla02g01816 867 Coils Coil 700 720 - -
Cla02g01816 867 MobiDBLite consensus disorder prediction 375 397 - -
Cla02g01816 867 SMART cyclin_7 71 156 IPR013763 -
Cla02g01816 867 MobiDBLite consensus disorder prediction 648 664 - -
Cla02g01816 867 MobiDBLite consensus disorder prediction 577 672 - -
Cla02g01816 867 MobiDBLite consensus disorder prediction 353 407 - -
Cla02g01816 867 Coils Coil 467 522 - -
Cla02g01816 867 MobiDBLite consensus disorder prediction 353 368 - -
Cla02g01816 867 PANTHER - 1 202 - -
Cla02g01816 867 PANTHER - 205 391 - -
Cla02g01816 867 MobiDBLite consensus disorder prediction 596 640 - -
Cla02g01816 867 MobiDBLite consensus disorder prediction 207 227 - -
Cla02g01816 867 CDD CYCLIN 65 126 IPR013763 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g01816 K15188 CCNT; cyclin T - csv:101220862 768.459
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00884 Cla-Chr1:11134254 Cla02g01816 Cla-Chr2:33254295 4.00E-138 dispersed
Cla02g01816 Cla-Chr2:33254295 Cla08g01465 Cla-Chr8:27569075 1.29E-71 dispersed
Cla02g01816 Cla-Chr2:33254295 Cla05g00602 Cla-Chr5:5502008 2.19E-32 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g1084 . . . . . . . . . . . . . . . . Cpe16g00719 . . . . . . . Cla02g01816 Cam02g1922 Cec02g1943 Cco02g1987 Clacu02g1904 Cmu02g1851 Cre02g2165 . . . . . . . Cme11g01598 . . . . . . . Bma12g00594 . . . . . . . . Cpe05g01035 Bhi10g00960 Tan05g0605 . . Hepe08g0632 . . . . . . . . . . Csa06g01166 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000905 2 5 2 4 2 3 4 3 3 2 3 2 4 1 2 4 3 3 3 1 2 2 3 3 3 2 2 5 2 1 81
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla02g01816 Cla_Chr02 FPKM 11.833893 12.616734 2.979946 3.555013 19.637508 19.368361 19.057995 0.678473 0.676131 0.804409