Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g01817 ATGCATATGGAGAATTTATCATCTAGTGATCCATCACATCAAGCGTTGTATGAAAATAGTGATTCAAAGCACTCACAGGATGGGTTGGAGGATGGCTCTCGATGGTATTTTTCTAGGAAGGAATTAGAAGAATTCTCACCTTCTAAACAAGATGGGATTGACTTGAAGAAGGAGACATATTTACGCAAATCATACTGTACATTTCTCCAAGATTTGGGAATGAGACTTAAAGTTCCCCAGGTAACCATTGCTACAGCTATAATTTTTTGCCATAGGTTCTTTCTACGGCAGTCTCATGCAAAGAATGACCGAAGGAAACCGACGACGGCACCTCAAACATTTGGCGAATTGTTGCTGATGAGCGGTGGTGCAAAGTGCGCACGACGAGTGACAACCCAACTCGCGAGATGGCTGTTGGCGAGATCCGGCGGCGGCGTGGCTGGTCGTAGTGATGGGAGCGCAACGTCGAGCAGTTGA 477 45.91 MHMENLSSSDPSHQALYENSDSKHSQDGLEDGSRWYFSRKELEEFSPSKQDGIDLKKETYLRKSYCTFLQDLGMRLKVPQVTIATAIIFCHRFFLRQSHAKNDRRKPTTAPQTFGELLLMSGGAKCARRVTTQLARWLLARSGGGVAGRSDGSATSSS 158
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 33270740 33277720 - ClCG02G018580.1 Cla02g01817 267943

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g01817 158 MobiDBLite consensus disorder prediction 1 30 - -
Cla02g01817 158 SUPERFAMILY Cyclin-like 32 105 IPR036915 -
Cla02g01817 158 PANTHER - 3 108 - -
Cla02g01817 158 Gene3D - 23 119 - -
Cla02g01817 158 CDD CYCLIN 61 103 IPR013763 -
Cla02g01817 158 PANTHER CYCLIN 3 108 IPR043198 GO:0006357|GO:0016538
Cla02g01817 158 Pfam Cyclin, N-terminal domain 36 104 IPR006671 -
Cla02g01817 158 MobiDBLite consensus disorder prediction 1 22 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g01817 K15188 CCNT; cyclin T - csv:101220862 216.468
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g01817 Cla-Chr2:33270740 Cla08g01465 Cla-Chr8:27569075 3.89E-33 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g1087 . . . . Bpe07g00462 . . . . . . . . . . . Cpe16g00717 . . . . . . . Cla02g01817 Cam02g1923 Cec02g1948 . . Cmu02g1852 . . . . . . . . Cme11g01601 . . . . . . . Bma12g00592 . . . . . . . . . Bhi10g00958 . . . Hepe08g0633 . . . . . . . . . . Csa06g01165 Chy11g01027 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000905 2 5 2 4 2 3 4 3 3 2 3 2 4 1 2 4 3 3 3 1 2 2 3 3 3 2 2 5 2 1 81
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla02g01817 Cla_Chr02 FPKM 3.192864 3.630793 4.648554 4.663506 16.586571 14.351366 19.204964 6.287997 5.484992 7.138593