Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g01821 ATGCAGATCTTTGTCAAAACCCTAACTGGGAAGACGATCACGCTCGAAGTCGAGAGCAGTGATACCATCGATAATGTCAAAGCCAAGATCCAGGACAAGGAAGGTATTCCTCCTGACCAGCAGAGATTAATTTTTGCTGGTAAGCAATTGGAAGATGGTCGAACGCTTGCCGATTATAACATCCAAAAGGAATCAACCCTTCACTTGGTCTTGAGGCTTAGGGGAGGTACTATGATTAAGGTCAAGACTCTGACCGGGAAGGAAATTGAGATTGACATTGAGCCAACTGACACAATTGATCGTATCAAGGAGCGGGTTGAGGAAAAAGAGGGTATTCCCCCTGTACAGCAAAGGCTCATTTATGCCGGTAAACAGCTTGGAGATGACAAAACGGCTAAAGACTACAACATTGAGGGTGGTTCTGTTCTCCATCTAGTGCTTGCCCTGAGGGGTGGTTATCTGTAA 465 45.59 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLGDDKTAKDYNIEGGSVLHLVLALRGGYL 154
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 33344186 33347019 + ClCG02G018615.1 Cla02g01821 267947
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g01821 154 ProSiteProfiles Ubiquitin domain profile. 77 152 IPR000626 GO:0005515
Cla02g01821 154 SUPERFAMILY Ubiquitin-like 1 76 IPR029071 -
Cla02g01821 154 ProSitePatterns Ubiquitin domain signature. 103 128 IPR019954 -
Cla02g01821 154 ProSiteProfiles Ubiquitin domain profile. 1 76 IPR000626 GO:0005515
Cla02g01821 154 PANTHER - 1 152 - -
Cla02g01821 154 PANTHER UBIQUITIN 1 152 - -
Cla02g01821 154 PRINTS Ubiquitin signature 11 31 IPR019956 -
Cla02g01821 154 PRINTS Ubiquitin signature 32 52 IPR019956 -
Cla02g01821 154 PRINTS Ubiquitin signature 53 74 IPR019956 -
Cla02g01821 154 CDD Ubl_NEDD8 79 152 IPR038738 -
Cla02g01821 154 Pfam Ubiquitin family 79 150 IPR000626 GO:0005515
Cla02g01821 154 Pfam Ubiquitin family 3 74 IPR000626 GO:0005515
Cla02g01821 154 Gene3D - 78 153 - -
Cla02g01821 154 Gene3D - 1 77 - -
Cla02g01821 154 SMART ubq_7 77 148 IPR000626 GO:0005515
Cla02g01821 154 SMART ubq_7 1 72 IPR000626 GO:0005515
Cla02g01821 154 ProSitePatterns Ubiquitin domain signature. 27 52 IPR019954 -
Cla02g01821 154 CDD Ubl_ubiquitin 1 76 - -
Cla02g01821 154 SUPERFAMILY Ubiquitin-like 78 152 IPR029071 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g01821 Cla-Chr2:33344186 Cla05g01530 Cla-Chr5:25202788 7.82E-81 dispersed
Cla02g01821 Cla-Chr2:33344186 Cla01g02163 Cla-Chr1:35752408 5.35E-82 transposed
Cla02g01821 Cla-Chr2:33344186 Cla03g00464 Cla-Chr3:5211045 8.68E-81 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g01821 K12158 - csv:101214716 293.893