Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g01823 ATGTTGTCTTTGAAATTTGGGTCAAAATTAGTGGCGGTTGCTGCCTTCCCACCAGTCTTAGGACGTCAAAGACACTTGAGAAATCTTTGCTGCTGTTCTAACCGTTTTCAGTCGAATGGTTTATCTTCTGAATGTCAGATTGATTTCAATTCACCATTGCCGTCGAGAGATTCTTCGTCTTTGGAAGGTTACATTTCAACTTTGTTGTATTTATGTCTGCAAAATTTGATGCTAGATTACCATTTACAAACGACTCGAGGATGTCATGGTCGGCTATTTTTTTGGGAAGAAGAGAGCTACAGAAGTTGCTCACTCATATTAATTACTTGTCCTTTATCCATCAGTGTATGGAAACGTGTCGTCAGAAAAGGGGATACAGTGGTAGATGCTACTTGTGGAAACGGGTATGATACACTGGCTATGGTCAAAATGGTTGCAGATGAATCTGGTTCTGGGCATGTTTATGCAATGGACGTTCAGAAAGAGGCTTTAGAAAGTACTTCTGTGTTGCTGGACGAGTCACTCAGTGAAAAAGAGAAGAAACTTGTTAAACTCTCTTCCATTTGCCACAGCAGAATGGAGGATGTCATTCCAGAGGATTCTCCCGTTAGGCTTGTTGCATTTAACCTAGGCTACCTACCTGGTGGTAACAAAGCAATTACTACAAAGTCAGAAACAACATTACAAGCACTTAAAGCTGCCAATAGAATTCTGAAACCTGGAGGGCTTATCAGCCTTGTGGTTTATGTGGGGCATCCTGGTGGACTGGAAGAATTGGAGACTATTGAAAAATTTTCTGGTGATCTGGCTGTTGAGAATTGGATTTGTTGTAAGCTTCAGATGTTAAACCGGCCATTAGCTCCAGTGCCTGTGTTTTTATTCAAGAGATGA 891 41.19 MLSLKFGSKLVAVAAFPPVLGRQRHLRNLCCCSNRFQSNGLSSECQIDFNSPLPSRDSSSLEGYISTLLYLCLQNLMLDYHLQTTRGCHGRLFFWEEESYRSCSLILITCPLSISVWKRVVRKGDTVVDATCGNGYDTLAMVKMVADESGSGHVYAMDVQKEALESTSVLLDESLSEKEKKLVKLSSICHSRMEDVIPEDSPVRLVAFNLGYLPGGNKAITTKSETTLQALKAANRILKPGGLISLVVYVGHPGGLEELETIEKFSGDLAVENWICCKLQMLNRPLAPVPVFLFKR 296
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 33373336 33378260 - ClCG02G018630.2 Cla02g01823 267949

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g01823 296 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 120 264 IPR029063 -
Cla02g01823 296 Gene3D Vaccinia Virus protein VP39 108 296 IPR029063 -
Cla02g01823 296 Pfam Putative rRNA methylase 154 292 IPR010719 -
Cla02g01823 296 CDD AdoMet_MTases 126 251 - -
Cla02g01823 296 PANTHER S-ADENOSYL-L-METHIONINE-DEPENDENT METHYLTRANSFERASES SUPERFAMILY PROTEIN 112 296 IPR010719 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g01823 - - - csv:101214958 394.815
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g1127 . . . . . . . . . . . . . . . . Cpe16g00712 . . . . . . . Cla02g01823 Cam02g1931 Cec02g1956 Cco02g1997 Clacu02g1912 Cmu02g1860 Cre02g2174 . . . . . . . . Blo15g00629 . . . . . . Bma12g00584 . . . . . . . . . Bhi10g00951 Tan05g0596 . . . . . . . . . . . . . Csa06g01157 Chy11g01034 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006555 1 5 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 3 1 36