Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g01825 ATGGATCAAGAAGTATTAGTCGACGAGAGTTTCCCGCTTTTCTCAAAATCCCACCGAAAGAAGCATAAACCTTCCGGAAACCCCAACGCTGCTCCTGTTTCCACCGCCGTCGAGAACATTGCTCCGAAGAAGTCTCTTCAGATTGAGAAATCCACAGAACTTAGCACCAAATCCACCAACAATGTTACATTTGCCGACCTCGGCTTGTCGGAATGGATCGTCCAGACTTGCAAAGAATTGGTTATGAAGAAGCCCACGGCGGTTCAAACCCACTGCATCCCTAAGATTCTTGCTGGCCTCGACGTACTTGGTATTGCCCAAACTGGGAGTGGGAAGACTGCTGCCTTTGCGTTGCCGATTCTTCAACGGCTTTCCGAGACCCCTTTTGGTGTCTTCGCGTTGGTGGTCACTCCCACTAGGGAATTGGCCTATCAATTGGCTGAGCAGTTCAGGGCACTCGGTTCCTGCTTGAATTTGCGGTGCTCTGTGGTTGTTGGAGGTATGGATATGTTGAACCAGACGCAGAGTTTGTTGAAGAGGCCTCATATAGTAATTGCAACGCCGGGAAGGGTTAAAGTATTGCTGGAGAACCCTGATATCCCTGTCGTCTTTTCCAAAACTAAGTTCCTAGTTCTGGATGAAGCTGATAGAGTATTGGATGTTGGCTTTGAAGAAGAATTGAAAGTAATCTTCCAATGCTTGCCACGCAACCGTCAAACTCTATTATTCTCTGCAACAATGACGAAGGATCTGGAAACACTGCTCGAGCTTTCTGCAAACAAGGCGTACTTTTACGAGGCTTATGAAGGCTTCAAGACAGTTGATATGCTCAAGCAGCAATATGTATTTATTCCAAAGGACGTGAAGGATCTGTATCTACTACATATTTTGTCTAAAATGGAAGACATGGGTATTCGATCAGCAATCATATTTGTCCAAACTTGCAAAAGTTGTCACCTGTTAGGGTTGTTGCTTGAAGCACTCGATCAGGAGGTGGCAGCATTGCATTCATTTAAGTCACAGTCTGAGAGGCTTGCCGCACTCTACCGTTTCAAATCAGGACAAGTTCCTGTATTGCTTGCAACTGATGTTGCTAGTCGAGGTTTGGATATTCCAACAGTTGATCTTGTTATCAACTACGATATTCCAAGGTTTCCAAGAGATTATGTTCATCGAGTGGGACGTACTGCACGTGCAGGCAGAGGAGGATTGGCTGTGAGCTTTATTACCCAGCGAACGGTGACTTTGTATGATGCATGCAAATTACCGTTGAGCTACGCTTATTTAGATCGGCAAATGTGTAATGATGTGCAGCTTATTCATGAAATAGAGGCCAATCTTGGAAAGCAATTGGAGATTTTTGAGTGCAAGGAGAATGAAGTGCTTGAGAATATTACCAAGGTTTACAAGGCTAGACATGTGGCAAAAATGAAGATGGTGGATGATGGATTTGAGGAGAAAGTAAAAGAACGAAAGAAACAGAAATTAAAAACATTGGCAGAGAAAGGATTGATGAAGAAAAGGAACAAAAGGAGAAGAAAAGAAAAAACTTCCCAAATAATTGGCAGTTAA 1572 43.83 MDQEVLVDESFPLFSKSHRKKHKPSGNPNAAPVSTAVENIAPKKSLQIEKSTELSTKSTNNVTFADLGLSEWIVQTCKELVMKKPTAVQTHCIPKILAGLDVLGIAQTGSGKTAAFALPILQRLSETPFGVFALVVTPTRELAYQLAEQFRALGSCLNLRCSVVVGGMDMLNQTQSLLKRPHIVIATPGRVKVLLENPDIPVVFSKTKFLVLDEADRVLDVGFEEELKVIFQCLPRNRQTLLFSATMTKDLETLLELSANKAYFYEAYEGFKTVDMLKQQYVFIPKDVKDLYLLHILSKMEDMGIRSAIIFVQTCKSCHLLGLLLEALDQEVAALHSFKSQSERLAALYRFKSGQVPVLLATDVASRGLDIPTVDLVINYDIPRFPRDYVHRVGRTARAGRGGLAVSFITQRTVTLYDACKLPLSYAYLDRQMCNDVQLIHEIEANLGKQLEIFECKENEVLENITKVYKARHVAKMKMVDDGFEEKVKERKKQKLKTLAEKGLMKKRNKRRRKEKTSQIIGS 523
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 33405777 33409825 - ClCG02G018650.2 Cla02g01825 267951
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g01825 523 CDD DEADc_DDX49 64 266 - -
Cla02g01825 523 SMART helicmild6 319 400 IPR001650 -
Cla02g01825 523 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 62 90 IPR014014 GO:0003724
Cla02g01825 523 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 211 219 IPR000629 -
Cla02g01825 523 MobiDBLite consensus disorder prediction 499 523 - -
Cla02g01825 523 Gene3D - 32 266 IPR027417 -
Cla02g01825 523 MobiDBLite consensus disorder prediction 16 35 - -
Cla02g01825 523 Pfam DEAD/DEAH box helicase 86 254 IPR011545 GO:0003676|GO:0005524
Cla02g01825 523 PANTHER RNA HELICASE 61 515 - -
Cla02g01825 523 SMART ultradead3 81 280 IPR014001 -
Cla02g01825 523 CDD SF2_C_DEAD 277 409 - -
Cla02g01825 523 Pfam Helicase conserved C-terminal domain 292 400 IPR001650 -
Cla02g01825 523 PANTHER ATP-DEPENDENT RNA HELICASE DDX49-RELATED 61 515 - -
Cla02g01825 523 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 130 416 IPR027417 -
Cla02g01825 523 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 93 265 IPR014001 -
Cla02g01825 523 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 276 462 IPR001650 -
Cla02g01825 523 Gene3D - 273 521 IPR027417 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00071 Cla-Chr1:581548 Cla02g01825 Cla-Chr2:33405777 7.00E-108 dispersed
Cla02g01825 Cla-Chr2:33405777 Cla09g00986 Cla-Chr9:10347357 1.02E-67 dispersed
Cla02g01825 Cla-Chr2:33405777 Cla02g02318 Cla-Chr2:38276790 1.53E-63 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g01825 K14778 - csv:101215196 857.825