Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g01825 ATGGATCAAGAAGTATTAGTCGACGAGAGTTTCCCGCTTTTCTCAAAATCCCACCGAAAGAAGCATAAACCTTCCGGAAACCCCAACGCTGCTCCTGTTTCCACCGCCGTCGAGAACATTGCTCCGAAGAAGTCTCTTCAGATTGAGAAATCCACAGAACTTAGCACCAAATCCACCAACAATGTTACATTTGCCGACCTCGGCTTGTCGGAATGGATCGTCCAGACTTGCAAAGAATTGGTTATGAAGAAGCCCACGGCGGTTCAAACCCACTGCATCCCTAAGATTCTTGCTGGCCTCGACGTACTTGGTATTGCCCAAACTGGGAGTGGGAAGACTGCTGCCTTTGCGTTGCCGATTCTTCAACGGCTTTCCGAGACCCCTTTTGGTGTCTTCGCGTTGGTGGTCACTCCCACTAGGGAATTGGCCTATCAATTGGCTGAGCAGTTCAGGGCACTCGGTTCCTGCTTGAATTTGCGGTGCTCTGTGGTTGTTGGAGGTATGGATATGTTGAACCAGACGCAGAGTTTGTTGAAGAGGCCTCATATAGTAATTGCAACGCCGGGAAGGGTTAAAGTATTGCTGGAGAACCCTGATATCCCTGTCGTCTTTTCCAAAACTAAGTTCCTAGTTCTGGATGAAGCTGATAGAGTATTGGATGTTGGCTTTGAAGAAGAATTGAAAGTAATCTTCCAATGCTTGCCACGCAACCGTCAAACTCTATTATTCTCTGCAACAATGACGAAGGATCTGGAAACACTGCTCGAGCTTTCTGCAAACAAGGCGTACTTTTACGAGGCTTATGAAGGCTTCAAGACAGTTGATATGCTCAAGCAGCAATATGTATTTATTCCAAAGGACGTGAAGGATCTGTATCTACTACATATTTTGTCTAAAATGGAAGACATGGGTATTCGATCAGCAATCATATTTGTCCAAACTTGCAAAAGTTGTCACCTGTTAGGGTTGTTGCTTGAAGCACTCGATCAGGAGGTGGCAGCATTGCATTCATTTAAGTCACAGTCTGAGAGGCTTGCCGCACTCTACCGTTTCAAATCAGGACAAGTTCCTGTATTGCTTGCAACTGATGTTGCTAGTCGAGGTTTGGATATTCCAACAGTTGATCTTGTTATCAACTACGATATTCCAAGGTTTCCAAGAGATTATGTTCATCGAGTGGGACGTACTGCACGTGCAGGCAGAGGAGGATTGGCTGTGAGCTTTATTACCCAGCGAACGGTGACTTTGTATGATGCATGCAAATTACCGTTGAGCTACGCTTATTTAGATCGGCAAATGTGTAATGATGTGCAGCTTATTCATGAAATAGAGGCCAATCTTGGAAAGCAATTGGAGATTTTTGAGTGCAAGGAGAATGAAGTGCTTGAGAATATTACCAAGGTTTACAAGGCTAGACATGTGGCAAAAATGAAGATGGTGGATGATGGATTTGAGGAGAAAGTAAAAGAACGAAAGAAACAGAAATTAAAAACATTGGCAGAGAAAGGATTGATGAAGAAAAGGAACAAAAGGAGAAGAAAAGAAAAAACTTCCCAAATAATTGGCAGTTAA 1572 43.83 MDQEVLVDESFPLFSKSHRKKHKPSGNPNAAPVSTAVENIAPKKSLQIEKSTELSTKSTNNVTFADLGLSEWIVQTCKELVMKKPTAVQTHCIPKILAGLDVLGIAQTGSGKTAAFALPILQRLSETPFGVFALVVTPTRELAYQLAEQFRALGSCLNLRCSVVVGGMDMLNQTQSLLKRPHIVIATPGRVKVLLENPDIPVVFSKTKFLVLDEADRVLDVGFEEELKVIFQCLPRNRQTLLFSATMTKDLETLLELSANKAYFYEAYEGFKTVDMLKQQYVFIPKDVKDLYLLHILSKMEDMGIRSAIIFVQTCKSCHLLGLLLEALDQEVAALHSFKSQSERLAALYRFKSGQVPVLLATDVASRGLDIPTVDLVINYDIPRFPRDYVHRVGRTARAGRGGLAVSFITQRTVTLYDACKLPLSYAYLDRQMCNDVQLIHEIEANLGKQLEIFECKENEVLENITKVYKARHVAKMKMVDDGFEEKVKERKKQKLKTLAEKGLMKKRNKRRRKEKTSQIIGS 523
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 33405777 33409825 - ClCG02G018650.2 Cla02g01825 267951

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g01825 523 CDD DEADc_DDX49 64 266 - -
Cla02g01825 523 SMART helicmild6 319 400 IPR001650 -
Cla02g01825 523 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 62 90 IPR014014 GO:0003724
Cla02g01825 523 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 211 219 IPR000629 -
Cla02g01825 523 MobiDBLite consensus disorder prediction 499 523 - -
Cla02g01825 523 Gene3D - 32 266 IPR027417 -
Cla02g01825 523 MobiDBLite consensus disorder prediction 16 35 - -
Cla02g01825 523 Pfam DEAD/DEAH box helicase 86 254 IPR011545 GO:0003676|GO:0005524
Cla02g01825 523 PANTHER RNA HELICASE 61 515 - -
Cla02g01825 523 SMART ultradead3 81 280 IPR014001 -
Cla02g01825 523 CDD SF2_C_DEAD 277 409 - -
Cla02g01825 523 Pfam Helicase conserved C-terminal domain 292 400 IPR001650 -
Cla02g01825 523 PANTHER ATP-DEPENDENT RNA HELICASE DDX49-RELATED 61 515 - -
Cla02g01825 523 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 130 416 IPR027417 -
Cla02g01825 523 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 93 265 IPR014001 -
Cla02g01825 523 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 276 462 IPR001650 -
Cla02g01825 523 Gene3D - 273 521 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g01825 K14778 DDX49, DBP8; ATP-dependent RNA helicase DDX49/DBP8 [EC:3.6.4.13] - csv:101215196 857.825
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00071 Cla-Chr1:581548 Cla02g01825 Cla-Chr2:33405777 7.00E-108 dispersed
Cla02g01825 Cla-Chr2:33405777 Cla09g00986 Cla-Chr9:10347357 1.02E-67 dispersed
Cla02g01825 Cla-Chr2:33405777 Cla02g02318 Cla-Chr2:38276790 1.53E-63 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g1140 . . . . . . . . . . . . . . . . . . . . . . . . Cla02g01825 Cam02g1933 Cec02g1959 Cco02g2000 Clacu02g1914 Cmu02g1862 Cre02g2177 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009084 4 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 34