Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g01828 ATGGCTTTCTCATCCTCCCTCGCTCGATCTGCCGTTTCCTCTTCTCTGATCGAAGCTTCTCGTTCTGACTTGTCGCCGTCCGACTGCCGGAAGGCTTCATGCGTCGGGAGCTCTTTGAAGCTTCAATCTGGTGTTTTTGGAACTACTATCTCGAGTGGGGCGTCTTCTTTACAGTTAAGGTCATCTAAAGTTCGAACCGTCCAACCCATCAAAGCTACGGCCACGGAGGCGCCTCCGACGATCCAAAAAACTCCTAGCGGTGGGAAGACCAAGATAGGAATCAATGGCTTTGGTCGAATTGGAAGACTGGTGTTGCGAATTGCAACCTCCAGAGATGATATTGATGTTGTAGCAGTTAATGATCCATTTGTTGATGCCAAGTACATGGCTTACATGTTCAAATATGATTCTACTCATGGTGTTTTCAACGGAACCATCAAGGTTCTCAGTGATTCAACCTTGGAAATTAATGGGAAGCAGATCAAAGTTGTTAGCAAAAGGGACCCTGCAGATATCCCTTGGGGTGATTACGGGGCTGAATATGTTGTTGAGTCCTCTGGAGTTTTCACTTCGAAAGAGAAGGCGTCAGCACACTTGAAGGGTGGTGCTAAGAAAGTTGTAATCTCAGCTCCATCAGCTGATGCACCTATGTTTGTAGTTGGTGTTAATGAAAAAACTTACAAGCCGACAATGGATATTGTTTCCAACGCAAGTTGTACAACCAATTGTCTTGCACCTCTTGCAAAGGTTGTTCATGAGGAATTTGGCATTGTTGAAGGTCTAATGACTACCGTGCATGCAACAACAGCAACACAAAAGACTGTCGATGGCCCTTCAATGAAGGATTGGAGAGGAGGTCGTGGTGCTGCACAAAATATAATTCCTAGCTCTACTGGTGCTGCCAAGGCTGTTGGCAAAGTACTGCCAGAGCTAAATGGAAAGCTTACTGGAATGGCTTTCCGTGTCCCAACACCCAATGTATCTGTTGTGGACTTAACTTGCCGACTTCAAAAGACTGCTTCTTATGAAGATGTAAAGGCAGCAGTAAAGTATGCATCCGAAGGTCCATTGAAAGGCATTCTTGGATATACCGATGAGGATGTTGTCTCTACTGATTTTCTTGGTGACTCGAGGTCTCAGTGCCTCATTCGTGAAGCTGGTGACTTGCAACCGAGTACTGGACCTTATCGAGCACATGGCAATGGTTTCAGCCTTCAACTAAATGTTAAACTTGTCATTGGCAAAGCCCCGAGTTCTTGTGATTTTGATCGAGAATATTTGACATGTAAGAGTTCATTCTTCCAGTTTAACATATCTGGACCCGGCAGATTCAATTCAAGCAAGCAGAAAATCGCTTCCTTTTTAACCCGAATCTTAGTTTGGTTCAGCATAAAAATGGCAGATAATCCTAGAACAGATTCCTTCAGAACAGAGCTTTTGTCCCCCGAGAGCGTGGCTGCGGGAACAGATGGAATGGTAACGAAGGTGCCCTCGTGGCGACTCAATATGGACGAGTTCCGCTTGCCTACTGCAAACACGAGGTCTCATCATGGCATTGTTTATTACTGGAAGTCATGGATTTTGGAGGTGAAACTAAGGAGCGTTTTTATCTTGATCATAGACAGGCAGAGAAAGGTTGCTAAGTATTATGAAAGGCAGGAAAGTCTTCTCAAAGGATTCAATGAAGTTGACTCCTACAATGAACTGGGTATCGTGCCTGGAACTTTAACTGAGGATGAAAAGAAGCAAGAGGCGATCAGTGAGAGACGGGCAATATATGCATCCAACATAGCCAACATGTTGATCTTCATCGCTAAAGTTTATGCTTCAGTCGAAAGCAGATCATTAGCAGTTATAGCTTCAACACTAGATTCCCTGTTGGATCTTTTATCGGGGTTCATATTATGGTTTACAGCTAATGCTATGAGAAAGCCAAATCAGTACCGTTATCCTATCGGCAAGAATCGAATGCAACCAGTGGGAATTGTTGTGTTTGCATCAGTCATGGCAACTCTTGGAATACAAATATTGCTTGAATCAGCTAGAGAACTTATTTCAAAGGTTCAACCGGATAGAGATCCAGATAGAGTAAAATGGATGGTTGGAATAATGGCATCCGTGACAGTAGTGAAATTTTGCCTTACAATATACTGTCGTAGATTCACAAATGAAATCATCAGAGCCTATGCCCAAGACCATTTCTTTGATGTAATTACCAATTCAATTGGTCTTGCGACTGCCCTTTTGGCCATCAAATTCTACTGGTGGCTTGATCCCCTTGGGGCTATCCTAATAGCATTGTACACTATCAGCAACTGGTCAAAGACCGTAATGGAAAATGTATGGTCGCTAATAGGGAGGACAGCCCCACCAGACTACTTGGCCAAGCTAACATATCTAGTATGGAATCATCACGAGGAAATCAAACATATTGATACAGTGAGAGCGTATACCTTCGGATGCAACTATTTTGTGGAGGTGGACATAGTGTTGCCTGGGGAAACTTCTCTAAGTCAAGCACATGACATTGGAGAAACACTTCAAGATAAACTTGAACAGCTTGATGAGGTTGATCGAGCTTTCGTTCATGTGGACTTTGAGTTCACTCATAAGCCAGAGCACAAGCCTAAAGCTTCATAG 2640 43.67 MAFSSSLARSAVSSSLIEASRSDLSPSDCRKASCVGSSLKLQSGVFGTTISSGASSLQLRSSKVRTVQPIKATATEAPPTIQKTPSGGKTKIGINGFGRIGRLVLRIATSRDDIDVVAVNDPFVDAKYMAYMFKYDSTHGVFNGTIKVLSDSTLEINGKQIKVVSKRDPADIPWGDYGAEYVVESSGVFTSKEKASAHLKGGAKKVVISAPSADAPMFVVGVNEKTYKPTMDIVSNASCTTNCLAPLAKVVHEEFGIVEGLMTTVHATTATQKTVDGPSMKDWRGGRGAAQNIIPSSTGAAKAVGKVLPELNGKLTGMAFRVPTPNVSVVDLTCRLQKTASYEDVKAAVKYASEGPLKGILGYTDEDVVSTDFLGDSRSQCLIREAGDLQPSTGPYRAHGNGFSLQLNVKLVIGKAPSSCDFDREYLTCKSSFFQFNISGPGRFNSSKQKIASFLTRILVWFSIKMADNPRTDSFRTELLSPESVAAGTDGMVTKVPSWRLNMDEFRLPTANTRSHHGIVYYWKSWILEVKLRSVFILIIDRQRKVAKYYERQESLLKGFNEVDSYNELGIVPGTLTEDEKKQEAISERRAIYASNIANMLIFIAKVYASVESRSLAVIASTLDSLLDLLSGFILWFTANAMRKPNQYRYPIGKNRMQPVGIVVFASVMATLGIQILLESARELISKVQPDRDPDRVKWMVGIMASVTVVKFCLTIYCRRFTNEIIRAYAQDHFFDVITNSIGLATALLAIKFYWWLDPLGAILIALYTISNWSKTVMENVWSLIGRTAPPDYLAKLTYLVWNHHEEIKHIDTVRAYTFGCNYFVEVDIVLPGETSLSQAHDIGETLQDKLEQLDEVDRAFVHVDFEFTHKPEHKPKAS 879
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 33432399 33441192 + ClCG02G018680.2 Cla02g01828 267954
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g01828 879 Pfam Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain 244 383 IPR020829 GO:0016620
Cla02g01828 879 SUPERFAMILY Cation efflux protein transmembrane domain-like 588 786 IPR027469 -
Cla02g01828 879 PANTHER CATION DIFFUSION FACILITATOR FAMILY TRANSPORTER 467 878 - -
Cla02g01828 879 Gene3D Cation efflux protein transmembrane domain 588 784 IPR027469 -
Cla02g01828 879 SUPERFAMILY Cation efflux protein cytoplasmic domain-like 789 865 IPR036837 -
Cla02g01828 879 PANTHER MITOCHONDRIAL METAL TRANSPORTER 1-RELATED 467 878 - -
Cla02g01828 879 Pfam Cation efflux family 593 784 IPR002524 GO:0006812|GO:0008324|GO:0016021|GO:0055085
Cla02g01828 879 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 198 211 IPR020831 GO:0016620
Cla02g01828 879 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 357 372 IPR020831 GO:0016620
Cla02g01828 879 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 317 334 IPR020831 GO:0016620
Cla02g01828 879 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 260 276 IPR020831 GO:0016620
Cla02g01828 879 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 233 251 IPR020831 GO:0016620
Cla02g01828 879 Gene3D Dihydrodipicolinate Reductase; domain 2 238 382 - -
Cla02g01828 879 Gene3D Cation efflux protein, cytoplasmic domain 791 866 IPR036837 -
Cla02g01828 879 TIGRFAM CDF: cation diffusion facilitator family transporter 589 865 IPR002524 GO:0006812|GO:0008324|GO:0016021|GO:0055085
Cla02g01828 879 SMART gp_dh_n_7 90 239 IPR020828 GO:0051287
Cla02g01828 879 SUPERFAMILY Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 238 380 - -
Cla02g01828 879 Gene3D - 91 237 - -
Cla02g01828 879 TIGRFAM GAPDH-I: glyceraldehyde-3-phosphate dehydrogenase, type I 91 386 IPR006424 GO:0006006|GO:0016620|GO:0050661|GO:0051287
Cla02g01828 879 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 89 255 IPR036291 -
Cla02g01828 879 ProSitePatterns Glyceraldehyde 3-phosphate dehydrogenase active site. 237 244 IPR020830 GO:0016620
Cla02g01828 879 Pfam Dimerisation domain of Zinc Transporter 793 865 IPR027470 -
Cla02g01828 879 Pfam Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 91 192 IPR020828 GO:0051287
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g01828 Cla-Chr2:33432399 Cla03g00337 Cla-Chr3:3926798 7.10E-135 dispersed
Cla02g01322 Cla-Chr2:27388081 Cla02g01828 Cla-Chr2:33432399 6.59E-32 transposed
Cla03g01339 Cla-Chr3:28703283 Cla02g01828 Cla-Chr2:33432399 1.45E-111 transposed
Cla09g00574 Cla-Chr9:5341542 Cla02g01828 Cla-Chr2:33432399 2.75E-07 transposed
Cla02g01828 Cla-Chr2:33432399 Cla09g02216 Cla-Chr9:39779354 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g01828 K00134 - csv:101216157 752.666