Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g01828 ATGGCTTTCTCATCCTCCCTCGCTCGATCTGCCGTTTCCTCTTCTCTGATCGAAGCTTCTCGTTCTGACTTGTCGCCGTCCGACTGCCGGAAGGCTTCATGCGTCGGGAGCTCTTTGAAGCTTCAATCTGGTGTTTTTGGAACTACTATCTCGAGTGGGGCGTCTTCTTTACAGTTAAGGTCATCTAAAGTTCGAACCGTCCAACCCATCAAAGCTACGGCCACGGAGGCGCCTCCGACGATCCAAAAAACTCCTAGCGGTGGGAAGACCAAGATAGGAATCAATGGCTTTGGTCGAATTGGAAGACTGGTGTTGCGAATTGCAACCTCCAGAGATGATATTGATGTTGTAGCAGTTAATGATCCATTTGTTGATGCCAAGTACATGGCTTACATGTTCAAATATGATTCTACTCATGGTGTTTTCAACGGAACCATCAAGGTTCTCAGTGATTCAACCTTGGAAATTAATGGGAAGCAGATCAAAGTTGTTAGCAAAAGGGACCCTGCAGATATCCCTTGGGGTGATTACGGGGCTGAATATGTTGTTGAGTCCTCTGGAGTTTTCACTTCGAAAGAGAAGGCGTCAGCACACTTGAAGGGTGGTGCTAAGAAAGTTGTAATCTCAGCTCCATCAGCTGATGCACCTATGTTTGTAGTTGGTGTTAATGAAAAAACTTACAAGCCGACAATGGATATTGTTTCCAACGCAAGTTGTACAACCAATTGTCTTGCACCTCTTGCAAAGGTTGTTCATGAGGAATTTGGCATTGTTGAAGGTCTAATGACTACCGTGCATGCAACAACAGCAACACAAAAGACTGTCGATGGCCCTTCAATGAAGGATTGGAGAGGAGGTCGTGGTGCTGCACAAAATATAATTCCTAGCTCTACTGGTGCTGCCAAGGCTGTTGGCAAAGTACTGCCAGAGCTAAATGGAAAGCTTACTGGAATGGCTTTCCGTGTCCCAACACCCAATGTATCTGTTGTGGACTTAACTTGCCGACTTCAAAAGACTGCTTCTTATGAAGATGTAAAGGCAGCAGTAAAGTATGCATCCGAAGGTCCATTGAAAGGCATTCTTGGATATACCGATGAGGATGTTGTCTCTACTGATTTTCTTGGTGACTCGAGGTCTCAGTGCCTCATTCGTGAAGCTGGTGACTTGCAACCGAGTACTGGACCTTATCGAGCACATGGCAATGGTTTCAGCCTTCAACTAAATGTTAAACTTGTCATTGGCAAAGCCCCGAGTTCTTGTGATTTTGATCGAGAATATTTGACATGTAAGAGTTCATTCTTCCAGTTTAACATATCTGGACCCGGCAGATTCAATTCAAGCAAGCAGAAAATCGCTTCCTTTTTAACCCGAATCTTAGTTTGGTTCAGCATAAAAATGGCAGATAATCCTAGAACAGATTCCTTCAGAACAGAGCTTTTGTCCCCCGAGAGCGTGGCTGCGGGAACAGATGGAATGGTAACGAAGGTGCCCTCGTGGCGACTCAATATGGACGAGTTCCGCTTGCCTACTGCAAACACGAGGTCTCATCATGGCATTGTTTATTACTGGAAGTCATGGATTTTGGAGGTGAAACTAAGGAGCGTTTTTATCTTGATCATAGACAGGCAGAGAAAGGTTGCTAAGTATTATGAAAGGCAGGAAAGTCTTCTCAAAGGATTCAATGAAGTTGACTCCTACAATGAACTGGGTATCGTGCCTGGAACTTTAACTGAGGATGAAAAGAAGCAAGAGGCGATCAGTGAGAGACGGGCAATATATGCATCCAACATAGCCAACATGTTGATCTTCATCGCTAAAGTTTATGCTTCAGTCGAAAGCAGATCATTAGCAGTTATAGCTTCAACACTAGATTCCCTGTTGGATCTTTTATCGGGGTTCATATTATGGTTTACAGCTAATGCTATGAGAAAGCCAAATCAGTACCGTTATCCTATCGGCAAGAATCGAATGCAACCAGTGGGAATTGTTGTGTTTGCATCAGTCATGGCAACTCTTGGAATACAAATATTGCTTGAATCAGCTAGAGAACTTATTTCAAAGGTTCAACCGGATAGAGATCCAGATAGAGTAAAATGGATGGTTGGAATAATGGCATCCGTGACAGTAGTGAAATTTTGCCTTACAATATACTGTCGTAGATTCACAAATGAAATCATCAGAGCCTATGCCCAAGACCATTTCTTTGATGTAATTACCAATTCAATTGGTCTTGCGACTGCCCTTTTGGCCATCAAATTCTACTGGTGGCTTGATCCCCTTGGGGCTATCCTAATAGCATTGTACACTATCAGCAACTGGTCAAAGACCGTAATGGAAAATGTATGGTCGCTAATAGGGAGGACAGCCCCACCAGACTACTTGGCCAAGCTAACATATCTAGTATGGAATCATCACGAGGAAATCAAACATATTGATACAGTGAGAGCGTATACCTTCGGATGCAACTATTTTGTGGAGGTGGACATAGTGTTGCCTGGGGAAACTTCTCTAAGTCAAGCACATGACATTGGAGAAACACTTCAAGATAAACTTGAACAGCTTGATGAGGTTGATCGAGCTTTCGTTCATGTGGACTTTGAGTTCACTCATAAGCCAGAGCACAAGCCTAAAGCTTCATAG 2640 43.67 MAFSSSLARSAVSSSLIEASRSDLSPSDCRKASCVGSSLKLQSGVFGTTISSGASSLQLRSSKVRTVQPIKATATEAPPTIQKTPSGGKTKIGINGFGRIGRLVLRIATSRDDIDVVAVNDPFVDAKYMAYMFKYDSTHGVFNGTIKVLSDSTLEINGKQIKVVSKRDPADIPWGDYGAEYVVESSGVFTSKEKASAHLKGGAKKVVISAPSADAPMFVVGVNEKTYKPTMDIVSNASCTTNCLAPLAKVVHEEFGIVEGLMTTVHATTATQKTVDGPSMKDWRGGRGAAQNIIPSSTGAAKAVGKVLPELNGKLTGMAFRVPTPNVSVVDLTCRLQKTASYEDVKAAVKYASEGPLKGILGYTDEDVVSTDFLGDSRSQCLIREAGDLQPSTGPYRAHGNGFSLQLNVKLVIGKAPSSCDFDREYLTCKSSFFQFNISGPGRFNSSKQKIASFLTRILVWFSIKMADNPRTDSFRTELLSPESVAAGTDGMVTKVPSWRLNMDEFRLPTANTRSHHGIVYYWKSWILEVKLRSVFILIIDRQRKVAKYYERQESLLKGFNEVDSYNELGIVPGTLTEDEKKQEAISERRAIYASNIANMLIFIAKVYASVESRSLAVIASTLDSLLDLLSGFILWFTANAMRKPNQYRYPIGKNRMQPVGIVVFASVMATLGIQILLESARELISKVQPDRDPDRVKWMVGIMASVTVVKFCLTIYCRRFTNEIIRAYAQDHFFDVITNSIGLATALLAIKFYWWLDPLGAILIALYTISNWSKTVMENVWSLIGRTAPPDYLAKLTYLVWNHHEEIKHIDTVRAYTFGCNYFVEVDIVLPGETSLSQAHDIGETLQDKLEQLDEVDRAFVHVDFEFTHKPEHKPKAS 879
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 33432399 33441192 + ClCG02G018680.2 Cla02g01828 267954

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g01828 879 Pfam Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain 244 383 IPR020829 GO:0016620
Cla02g01828 879 SUPERFAMILY Cation efflux protein transmembrane domain-like 588 786 IPR027469 -
Cla02g01828 879 PANTHER CATION DIFFUSION FACILITATOR FAMILY TRANSPORTER 467 878 - -
Cla02g01828 879 Gene3D Cation efflux protein transmembrane domain 588 784 IPR027469 -
Cla02g01828 879 SUPERFAMILY Cation efflux protein cytoplasmic domain-like 789 865 IPR036837 -
Cla02g01828 879 PANTHER MITOCHONDRIAL METAL TRANSPORTER 1-RELATED 467 878 - -
Cla02g01828 879 Pfam Cation efflux family 593 784 IPR002524 GO:0006812|GO:0008324|GO:0016021|GO:0055085
Cla02g01828 879 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 198 211 IPR020831 GO:0016620
Cla02g01828 879 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 357 372 IPR020831 GO:0016620
Cla02g01828 879 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 317 334 IPR020831 GO:0016620
Cla02g01828 879 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 260 276 IPR020831 GO:0016620
Cla02g01828 879 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 233 251 IPR020831 GO:0016620
Cla02g01828 879 Gene3D Dihydrodipicolinate Reductase; domain 2 238 382 - -
Cla02g01828 879 Gene3D Cation efflux protein, cytoplasmic domain 791 866 IPR036837 -
Cla02g01828 879 TIGRFAM CDF: cation diffusion facilitator family transporter 589 865 IPR002524 GO:0006812|GO:0008324|GO:0016021|GO:0055085
Cla02g01828 879 SMART gp_dh_n_7 90 239 IPR020828 GO:0051287
Cla02g01828 879 SUPERFAMILY Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 238 380 - -
Cla02g01828 879 Gene3D - 91 237 - -
Cla02g01828 879 TIGRFAM GAPDH-I: glyceraldehyde-3-phosphate dehydrogenase, type I 91 386 IPR006424 GO:0006006|GO:0016620|GO:0050661|GO:0051287
Cla02g01828 879 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 89 255 IPR036291 -
Cla02g01828 879 ProSitePatterns Glyceraldehyde 3-phosphate dehydrogenase active site. 237 244 IPR020830 GO:0016620
Cla02g01828 879 Pfam Dimerisation domain of Zinc Transporter 793 865 IPR027470 -
Cla02g01828 879 Pfam Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 91 192 IPR020828 GO:0051287
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g01828 K00134 GAPDH, gapA; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] - csv:101216157 752.666
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g01828 Cla-Chr2:33432399 Cla03g00337 Cla-Chr3:3926798 7.10E-135 dispersed
Cla02g01322 Cla-Chr2:27388081 Cla02g01828 Cla-Chr2:33432399 6.59E-32 transposed
Cla03g01339 Cla-Chr3:28703283 Cla02g01828 Cla-Chr2:33432399 1.45E-111 transposed
Cla09g00574 Cla-Chr9:5341542 Cla02g01828 Cla-Chr2:33432399 2.75E-07 transposed
Cla02g01828 Cla-Chr2:33432399 Cla09g02216 Cla-Chr9:39779354 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g1151 Blo04g00461 . . . . . . . . . . . . . . . Cpe16g00708 . . . . . . . Cla02g01828 Cam02g1937 Cec02g1964 Cco02g2003 Clacu02g1917 Cmu02g1866 Cre02g2179 . . . . . . . Cme11g01635 . . . . Bpe15g00920 . Bma03g00494 . . . . . . . . . Cpe05g01032 Bhi10g00937 . . . . . . . . . . . . . . Csa06g01150 Chy11g01042 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005363 3 2 0 1 1 1 2 1 1 1 1 1 3 1 1 2 1 3 2 1 1 1 1 1 1 1 1 2 1 1 40