Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g01830 ATGGTTTATAACCATTCGCAAAGTTCCAATTTAACCTTAAACAAGATAAGATTTGGGTTTGGAATTGGATGTCATTTGAATTCCCGCTCGAGAGTTGCAAGGGAGGGAGTCATTTCGCCTCATCAACAAACGCGGAAGCATGCAGCACCTTCAATCCCGCCTACTAAAGTCTCTTTCTATTTCTTCTTCACCGGCCGCCTCCACAATCCAAGAAATTGCTTCTGCTTCCCCCAAAGGTCAGTGTACGATTTATATCCCTCACCTACGAGCTGGAAAATGAATGTCGATTATGCCAATTCGTTTCTGTTTGTTACCCATCTGTATGCCGAGCGTTTTAGCTTCTGGGTTGAAACTGTGTTGCATTTGGGGTTAGTAGGTTTGGCTAAGGTTGTGCTGAAAAAGGGGAAGGCACAGCTTTTTAAAGATGGGAGTCCAATGGTGTACAGTGGAGCTGTTGATAGAATTATTGGAAGGCCACCACCAAAAACTGGAGATGTTGTTCTGGTAGCCGATGGGACCGAAAAACCTATAGGTTGGGGTTTGTATAATTCAGTTTCTATGTTCTCTGTCAGATTGATGCAGTTGGAAGAAGAGGCAGCTAGAGACTCTTCTTGCACATTGAATATGGAGAAGATGATTGGAACAAGGATACATACTGCTAGAGAACTACGAAAGAACTTGGGACTTCCGTCGACCAGTACGAATGCTTATCGTCTTGTTAATAGTGAAGGAGATAGGTATCGACCTCATGTATTATGGCCACTATGGCTCAAGCTTCCTTGTTTAAGCACACTTGGAAAGTCATTCTCAACCGACTCCTCTAACGGTTTGTCTCTATTGTCAGGACTAATCATCGATGTCTTTGGAGATTTAGCAGTGGTAGCATCATCAGCTGCTTGGGTGGAGAAGTACAAAGCTGAAATAGAGGATTGTGTCCGTGGAATCGACGAAATCAATCATGTGAAATGGAGACCATCGGTGGACATTCTGAAAGAAGAAGGGATAGATGTGTCTGAATTGAAGGATACAAATCCGTCCATTTGTCCTGAAAGAACAAAGACATTGCTCTATGTAAACGAAATTAAGCAGCTCAATTCCATGAAGGTGACGGAGAATGAAATTTTTTATGCCATTTCACTTGAAGGCCAGAAAACAGGTTTTTATGCTGATCAGCGTGAAAATCGTCATTTTATCTCAACAATTTCGGAGGGTCAGAAGGTTCTTGATCTCTGCTGCTACAGTGGTGGGTTTTCTCTAAATGCAATACGTGGTGGAGCTATTAATGTCACGGGTATTGATTCATCATTGCCTGCTCTGGAGCTAGCAAAAGAAAATGTGATCCTTAATAGCATGGATCCGGAAAGAATATCATTTCTGAAAGCAGATGCCACTGCATTCATGAAGGATGCTCTATCTAGGAATGAATCTTGGGATATAGTCATTTTGGATCCTCCCAAACTAGCGCCACGGAAAAAGGAGTCTTGGGTTGGAGGATGGGTATCTCAGCTCATCTTTAATAAGAGGGCGAGTTCTGCAAACTGCATCAGGAATGTACAGGACTTTAAATTCATTAGCAATGCAACTCACAAGGAAAGGTGGTCTTCTCATGACTTGTTCGTGTTCTGGAGCAATGACACAAAGTGGGATGTTCTTGCAAATACTCCAGGCAAGTCTAGTTCCACCTCCACTCAAGAAATGAAAATACTTTTGGAAATATCATTCGGATCATTAAGAAAGGAAACTAAACTGGGTGCAGCATCAATGGCCAAAAAGAAAATCACAGTTCTACGACAAGCAGGAGCGGCATGTGACCACCCGATCGACCCTACTTACCCAGAGGGTGCTTATCTTTCTAACATTCTTCTACGTGTGCTCTAA 1878 42.65 MVYNHSQSSNLTLNKIRFGFGIGCHLNSRSRVAREGVISPHQQTRKHAAPSIPPTKVSFYFFFTGRLHNPRNCFCFPQRSVYDLYPSPTSWKMNVDYANSFLFVTHLYAERFSFWVETVLHLGLVGLAKVVLKKGKAQLFKDGSPMVYSGAVDRIIGRPPPKTGDVVLVADGTEKPIGWGLYNSVSMFSVRLMQLEEEAARDSSCTLNMEKMIGTRIHTARELRKNLGLPSTSTNAYRLVNSEGDRYRPHVLWPLWLKLPCLSTLGKSFSTDSSNGLSLLSGLIIDVFGDLAVVASSAAWVEKYKAEIEDCVRGIDEINHVKWRPSVDILKEEGIDVSELKDTNPSICPERTKTLLYVNEIKQLNSMKVTENEIFYAISLEGQKTGFYADQRENRHFISTISEGQKVLDLCCYSGGFSLNAIRGGAINVTGIDSSLPALELAKENVILNSMDPERISFLKADATAFMKDALSRNESWDIVILDPPKLAPRKKESWVGGWVSQLIFNKRASSANCIRNVQDFKFISNATHKERWSSHDLFVFWSNDTKWDVLANTPGKSSSTSTQEMKILLEISFGSLRKETKLGAASMAKKKITVLRQAGAACDHPIDPTYPEGAYLSNILLRVL 625
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 33446333 33450818 + ClCG02G018710.2 Cla02g01830 267956
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g01830 625 PANTHER RIBOSOMAL RNA LARGE SUBUNIT METHYLTRANSFERASE 125 247 - -
Cla02g01830 625 PANTHER RIBOSOMAL RNA LARGE SUBUNIT METHYLTRANSFERASE 279 625 - -
Cla02g01830 625 ProSiteProfiles PUA domain profile. 127 183 - -
Cla02g01830 625 Pfam S-adenosylmethionine-dependent methyltransferase 364 487 IPR019614 GO:0008168
Cla02g01830 625 SMART pua_5 128 208 IPR002478 GO:0003723
Cla02g01830 625 SUPERFAMILY PUA domain-like 129 197 IPR015947 -
Cla02g01830 625 Gene3D PUA domain 127 198 IPR036974 GO:0003723
Cla02g01830 625 Gene3D RNA methyltransferase domain (HRMD) like 278 342 - -
Cla02g01830 625 CDD AdoMet_MTases 406 485 - -
Cla02g01830 625 CDD RlmI_M_like 216 339 - -
Cla02g01830 625 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 265 500 IPR029063 -
Cla02g01830 625 Pfam PUA-like domain 130 193 IPR041532 -
Cla02g01830 625 Gene3D Vaccinia Virus protein VP39 366 625 IPR029063 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g01830 - - bhj:120088326 585.489