Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cla02g01833 | ATGTTCCATGCCACCAAGAAACCTTCCTCTATGACTTCTCATGACAGGCCAATGTGTGTCCAAGGCGATTCCGGTCTCGTCCTCACCACCGACCCCAAACCCCGCCTCCGTTGGACCGTCGAGCTCCACGAGCGCTTCGTCGACGCCGTCACTCAACTCGGAGGCCCCGATAAAGCCACCCCGAAAACCATCATGAGAGTTATGGGCGTCAAGGGTCTCACTCTCTACCATCTCAAGAGCCACCTTCAGAAATTCAGACTTGGAAAGCAACCCCACAAGGAATTCAATGATCAATCAATAAAGGATGGTATAAGAGCTTCAGCCTTGGAACTTCAAAGAAATAGTGGATCTTCTTCCAGCTTAATGGACCGTAATATGAACGAAATGCAAATGGAGGTCCAGAGAAGGCTGCATGAACAAATTGAGGTACAAAGACACCTTCAATTGAGAATTGAGGCTCAAGGCAAGTACATGCAAAGCATATTAGAGAAAGCTTGCCAAACCCTCGCCGGTGAAAACATGGCCGCCGCCAGCGCCGCCGCTGGCCCTTTCAAAACCACTTCCAACAATATGGGAACAACCACCAATCTTGTCTCAGAGGCTGCCATCAAAGACTTCATTTCACCTCCTCCACCTCACCACACCTTCCCTCCTTTTCAAGACATGAACAACCTATTTAACTCCGAACAGCCACCGCCTCCACCGCCTCTCATCGACTGCCTCAAGAAGCCCAGCCCCTTCATCTCAGGCGCAGGTAAGACCCCCATTTTCTGGCATCTCCAAGACTTAGGAACCCCTTCAGCCACCTTAGCACCGCCACCTCCTTCCATCGGCGGCCCAGCCGAGTTGGATCCCTTACAATTGGAAATGTATGAATCCAAACCGCCACCGCCACCACCACTACTCGCTGTTGGCAACAACGCAATGAATGAGAAGAAGTTTGACATGACGTTAAAGCTCGAGAGGTCGTCCCCACAGCGGTCGGGGCATTCCGACGAAAGGGTGAATAATAATGGTATGCCTAACAATAGCAACCCTACAATGTCACAGCCACAGGGAAGAAATTCATCATTTGGTTAA | 1080 | 50.65 | MFHATKKPSSMTSHDRPMCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHKEFNDQSIKDGIRASALELQRNSGSSSSLMDRNMNEMQMEVQRRLHEQIEVQRHLQLRIEAQGKYMQSILEKACQTLAGENMAAASAAAGPFKTTSNNMGTTTNLVSEAAIKDFISPPPPHHTFPPFQDMNNLFNSEQPPPPPPLIDCLKKPSPFISGAGKTPIFWHLQDLGTPSATLAPPPPSIGGPAELDPLQLEMYESKPPPPPPLLAVGNNAMNEKKFDMTLKLERSSPQRSGHSDERVNNNGMPNNSNPTMSQPQGRNSSFG | 359 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 33478656 | 33486223 | + | ClCG02G018740.1 | Cla02g01833 | 267959 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cla02g01833 | 359 | MobiDBLite | consensus disorder prediction | 292 | 359 | - | - | |
Cla02g01833 | 359 | Pfam | MYB-CC type transfactor, LHEQLE motif | 129 | 168 | IPR025756 | - | |
Cla02g01833 | 359 | MobiDBLite | consensus disorder prediction | 330 | 359 | - | - | |
Cla02g01833 | 359 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 30 | 90 | IPR017930 | - | |
Cla02g01833 | 359 | TIGRFAM | myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class | 33 | 88 | IPR006447 | GO:0003677 | |
Cla02g01833 | 359 | PANTHER | MYB FAMILY TRANSCRIPTION FACTOR APL | 1 | 230 | - | - | |
Cla02g01833 | 359 | Pfam | Myb-like DNA-binding domain | 36 | 84 | IPR001005 | - | |
Cla02g01833 | 359 | PANTHER | MYB FAMILY TRANSCRIPTION FACTOR PHL11 | 1 | 230 | IPR044848 | GO:0003700 | |
Cla02g01833 | 359 | MobiDBLite | consensus disorder prediction | 1 | 26 | - | - | |
Cla02g01833 | 359 | Gene3D | - | 32 | 90 | - | - | |
Cla02g01833 | 359 | SUPERFAMILY | Homeodomain-like | 32 | 88 | IPR009057 | - | |
Cla02g01833 | 359 | MobiDBLite | consensus disorder prediction | 1 | 17 | - | - | |
Cla02g01833 | 359 | MobiDBLite | consensus disorder prediction | 314 | 329 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cla02g01833 | Cla-Chr2:33478656 | Cla10g01268 | Cla-Chr10:27482619 | 6.33E-58 | dispersed | |
Cla11g00689 | Cla-Chr11:8061773 | Cla02g01833 | Cla-Chr2:33478656 | 4.58E-54 | transposed | |
Cla02g01833 | Cla-Chr2:33478656 | Cla09g02227 | Cla-Chr9:39854007 | 2.33E-121 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
60703 | PF00249 | Myb_DNA-binding | 1.90E-06 | CL0123 | Cla | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cla02g01833 | - | - | csv:101203721 | 627.861 |