Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g01833 ATGTTCCATGCCACCAAGAAACCTTCCTCTATGACTTCTCATGACAGGCCAATGTGTGTCCAAGGCGATTCCGGTCTCGTCCTCACCACCGACCCCAAACCCCGCCTCCGTTGGACCGTCGAGCTCCACGAGCGCTTCGTCGACGCCGTCACTCAACTCGGAGGCCCCGATAAAGCCACCCCGAAAACCATCATGAGAGTTATGGGCGTCAAGGGTCTCACTCTCTACCATCTCAAGAGCCACCTTCAGAAATTCAGACTTGGAAAGCAACCCCACAAGGAATTCAATGATCAATCAATAAAGGATGGTATAAGAGCTTCAGCCTTGGAACTTCAAAGAAATAGTGGATCTTCTTCCAGCTTAATGGACCGTAATATGAACGAAATGCAAATGGAGGTCCAGAGAAGGCTGCATGAACAAATTGAGGTACAAAGACACCTTCAATTGAGAATTGAGGCTCAAGGCAAGTACATGCAAAGCATATTAGAGAAAGCTTGCCAAACCCTCGCCGGTGAAAACATGGCCGCCGCCAGCGCCGCCGCTGGCCCTTTCAAAACCACTTCCAACAATATGGGAACAACCACCAATCTTGTCTCAGAGGCTGCCATCAAAGACTTCATTTCACCTCCTCCACCTCACCACACCTTCCCTCCTTTTCAAGACATGAACAACCTATTTAACTCCGAACAGCCACCGCCTCCACCGCCTCTCATCGACTGCCTCAAGAAGCCCAGCCCCTTCATCTCAGGCGCAGGTAAGACCCCCATTTTCTGGCATCTCCAAGACTTAGGAACCCCTTCAGCCACCTTAGCACCGCCACCTCCTTCCATCGGCGGCCCAGCCGAGTTGGATCCCTTACAATTGGAAATGTATGAATCCAAACCGCCACCGCCACCACCACTACTCGCTGTTGGCAACAACGCAATGAATGAGAAGAAGTTTGACATGACGTTAAAGCTCGAGAGGTCGTCCCCACAGCGGTCGGGGCATTCCGACGAAAGGGTGAATAATAATGGTATGCCTAACAATAGCAACCCTACAATGTCACAGCCACAGGGAAGAAATTCATCATTTGGTTAA 1080 50.65 MFHATKKPSSMTSHDRPMCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHKEFNDQSIKDGIRASALELQRNSGSSSSLMDRNMNEMQMEVQRRLHEQIEVQRHLQLRIEAQGKYMQSILEKACQTLAGENMAAASAAAGPFKTTSNNMGTTTNLVSEAAIKDFISPPPPHHTFPPFQDMNNLFNSEQPPPPPPLIDCLKKPSPFISGAGKTPIFWHLQDLGTPSATLAPPPPSIGGPAELDPLQLEMYESKPPPPPPLLAVGNNAMNEKKFDMTLKLERSSPQRSGHSDERVNNNGMPNNSNPTMSQPQGRNSSFG 359
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 33478656 33486223 + ClCG02G018740.1 Cla02g01833 267959

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g01833 359 MobiDBLite consensus disorder prediction 292 359 - -
Cla02g01833 359 Pfam MYB-CC type transfactor, LHEQLE motif 129 168 IPR025756 -
Cla02g01833 359 MobiDBLite consensus disorder prediction 330 359 - -
Cla02g01833 359 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 30 90 IPR017930 -
Cla02g01833 359 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 33 88 IPR006447 GO:0003677
Cla02g01833 359 PANTHER MYB FAMILY TRANSCRIPTION FACTOR APL 1 230 - -
Cla02g01833 359 Pfam Myb-like DNA-binding domain 36 84 IPR001005 -
Cla02g01833 359 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 1 230 IPR044848 GO:0003700
Cla02g01833 359 MobiDBLite consensus disorder prediction 1 26 - -
Cla02g01833 359 Gene3D - 32 90 - -
Cla02g01833 359 SUPERFAMILY Homeodomain-like 32 88 IPR009057 -
Cla02g01833 359 MobiDBLite consensus disorder prediction 1 17 - -
Cla02g01833 359 MobiDBLite consensus disorder prediction 314 329 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g01833 - - - csv:101203721 627.861
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g01833 Cla-Chr2:33478656 Cla10g01268 Cla-Chr10:27482619 6.33E-58 dispersed
Cla11g00689 Cla-Chr11:8061773 Cla02g01833 Cla-Chr2:33478656 4.58E-54 transposed
Cla02g01833 Cla-Chr2:33478656 Cla09g02227 Cla-Chr9:39854007 2.33E-121 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g1171 Blo04g00455 Blo13g00605 . . Bpe07g00477 . Bma08g00825 . . . . . . . . . . Bhi05g01981 Tan02g0015 Cmetu01g1460 Lac12g0030 . . . Cla02g01833 Cam02g1942 Cec02g1969 Cco02g2008 Clacu02g1922 Cmu02g1871 Cre02g2184 . . . . . Csa07g01218 . Cme11g01645 Blo15g00640 . . . Bpe15g00926 . Bma03g00488 Bma12g00569 Sed01g0770 . . . . . . Cpe15g00910 Cpe05g01028 Bhi10g00928 Tan05g0578 Cmetu11g1511 . Hepe08g0654 . . . . . . . . . . Csa06g01145 Chy11g01047 Cme01g01493
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cla09g02227 . 16 176 G2-like Transcription Factor Family AT3G24120 59.8 6.4e-42 168.3
Cla02g01833 . 22 192 G2-like Transcription Factor Family AT3G24120 54.6 4.6e-40 162.2
Cla07g00216 . 4 152 G2-like Transcription Factor Family AT3G24120 54.9 1.0e-39 161.0
Cla05g01126 . 246 446 G2-like Transcription Factor Family AT5G16560 56.5 8.3e-45 178.3
Cla09g01095 . 200 404 G2-like Transcription Factor Family AT5G16560 51.7 7.3e-41 165.2
Cla05g01991 CCT 1 167 G2-like Transcription Factor Family AT5G42630 58.3 7.6e-40 161.0
Cla08g01528 CCT 50 136 G2-like Transcription Factor Family AT5G42630 83.9 1.3e-36 150.2
Cla05g02327 . 19 256 G2-like Transcription Factor Family AT1G25550 55.4 5.7e-53 204.9
Cla08g00529 . 20 258 G2-like Transcription Factor Family AT1G25550 54.1 6.3e-52 201.4
Cla03g00126 CCT 183 451 G2-like Transcription Factor Family AT3G46640 51.7 3.3e-60 229.2
Cla04g00590 . 1 301 G2-like Transcription Factor Family AT5G05090 57.1 4.3e-74 275.0
Cla10g01569 . 1 283 G2-like Transcription Factor Family AT5G05090 53.8 7.2e-69 257.7
Cla09g02227 . 16 176 G2-like Transcription Factor Family AT3G24120 59.8 6.4e-42 168.3
Cla02g01833 . 22 192 G2-like Transcription Factor Family AT3G24120 54.6 4.6e-40 162.2
Cla07g00216 . 4 152 G2-like Transcription Factor Family AT3G24120 54.9 1.0e-39 161.0
Cla11g00689 . 2 228 G2-like Transcription Factor Family AT1G69580 56.0 9.4e-50 194.5
Cla09g02227 . 1 389 G2-like Transcription Factor Family AT1G79430 53.4 1.8e-83 306.6
Cla02g01833 . 1 181 G2-like Transcription Factor Family AT1G79430 85.8 7.6e-74 274.6
Cla04g00590 . 1 301 G2-like Transcription Factor Family AT3G10760 63.0 1.3e-91 333.6
Cla10g01569 . 1 283 G2-like Transcription Factor Family AT3G10760 57.8 5.4e-82 301.6
Cla04g00590 . 1 203 G2-like Transcription Factor Family AT2G40970 60.2 2.5e-60 229.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001069 3 4 3 4 3 2 4 2 2 2 2 2 4 2 2 4 2 3 3 2 2 2 2 2 2 2 1 6 5 2 81
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60703 PF00249 Myb_DNA-binding 1.90E-06 CL0123 Cla TF