Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g01833 ATGTTCCATGCCACCAAGAAACCTTCCTCTATGACTTCTCATGACAGGCCAATGTGTGTCCAAGGCGATTCCGGTCTCGTCCTCACCACCGACCCCAAACCCCGCCTCCGTTGGACCGTCGAGCTCCACGAGCGCTTCGTCGACGCCGTCACTCAACTCGGAGGCCCCGATAAAGCCACCCCGAAAACCATCATGAGAGTTATGGGCGTCAAGGGTCTCACTCTCTACCATCTCAAGAGCCACCTTCAGAAATTCAGACTTGGAAAGCAACCCCACAAGGAATTCAATGATCAATCAATAAAGGATGGTATAAGAGCTTCAGCCTTGGAACTTCAAAGAAATAGTGGATCTTCTTCCAGCTTAATGGACCGTAATATGAACGAAATGCAAATGGAGGTCCAGAGAAGGCTGCATGAACAAATTGAGGTACAAAGACACCTTCAATTGAGAATTGAGGCTCAAGGCAAGTACATGCAAAGCATATTAGAGAAAGCTTGCCAAACCCTCGCCGGTGAAAACATGGCCGCCGCCAGCGCCGCCGCTGGCCCTTTCAAAACCACTTCCAACAATATGGGAACAACCACCAATCTTGTCTCAGAGGCTGCCATCAAAGACTTCATTTCACCTCCTCCACCTCACCACACCTTCCCTCCTTTTCAAGACATGAACAACCTATTTAACTCCGAACAGCCACCGCCTCCACCGCCTCTCATCGACTGCCTCAAGAAGCCCAGCCCCTTCATCTCAGGCGCAGGTAAGACCCCCATTTTCTGGCATCTCCAAGACTTAGGAACCCCTTCAGCCACCTTAGCACCGCCACCTCCTTCCATCGGCGGCCCAGCCGAGTTGGATCCCTTACAATTGGAAATGTATGAATCCAAACCGCCACCGCCACCACCACTACTCGCTGTTGGCAACAACGCAATGAATGAGAAGAAGTTTGACATGACGTTAAAGCTCGAGAGGTCGTCCCCACAGCGGTCGGGGCATTCCGACGAAAGGGTGAATAATAATGGTATGCCTAACAATAGCAACCCTACAATGTCACAGCCACAGGGAAGAAATTCATCATTTGGTTAA 1080 50.65 MFHATKKPSSMTSHDRPMCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHKEFNDQSIKDGIRASALELQRNSGSSSSLMDRNMNEMQMEVQRRLHEQIEVQRHLQLRIEAQGKYMQSILEKACQTLAGENMAAASAAAGPFKTTSNNMGTTTNLVSEAAIKDFISPPPPHHTFPPFQDMNNLFNSEQPPPPPPLIDCLKKPSPFISGAGKTPIFWHLQDLGTPSATLAPPPPSIGGPAELDPLQLEMYESKPPPPPPLLAVGNNAMNEKKFDMTLKLERSSPQRSGHSDERVNNNGMPNNSNPTMSQPQGRNSSFG 359
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 33478656 33486223 + ClCG02G018740.1 Cla02g01833 267959
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g01833 359 MobiDBLite consensus disorder prediction 292 359 - -
Cla02g01833 359 Pfam MYB-CC type transfactor, LHEQLE motif 129 168 IPR025756 -
Cla02g01833 359 MobiDBLite consensus disorder prediction 330 359 - -
Cla02g01833 359 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 30 90 IPR017930 -
Cla02g01833 359 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 33 88 IPR006447 GO:0003677
Cla02g01833 359 PANTHER MYB FAMILY TRANSCRIPTION FACTOR APL 1 230 - -
Cla02g01833 359 Pfam Myb-like DNA-binding domain 36 84 IPR001005 -
Cla02g01833 359 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 1 230 IPR044848 GO:0003700
Cla02g01833 359 MobiDBLite consensus disorder prediction 1 26 - -
Cla02g01833 359 Gene3D - 32 90 - -
Cla02g01833 359 SUPERFAMILY Homeodomain-like 32 88 IPR009057 -
Cla02g01833 359 MobiDBLite consensus disorder prediction 1 17 - -
Cla02g01833 359 MobiDBLite consensus disorder prediction 314 329 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g01833 Cla-Chr2:33478656 Cla10g01268 Cla-Chr10:27482619 6.33E-58 dispersed
Cla11g00689 Cla-Chr11:8061773 Cla02g01833 Cla-Chr2:33478656 4.58E-54 transposed
Cla02g01833 Cla-Chr2:33478656 Cla09g02227 Cla-Chr9:39854007 2.33E-121 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60703 PF00249 Myb_DNA-binding 1.90E-06 CL0123 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g01833 - - csv:101203721 627.861