Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g01835 ATGGCTCCTATGACCCTCCCTCCAGGGTTTCGCTTCCACCCAACAGATGAAGAACTTGTTGCTTATTATTTGGATAGAAAGATCAATGGACGTTCCATCGAGCTCGAGATCATTCCCGAGATCGATCTTTATAAGTGTGAACCTTGGGAATTACCCGATAAGTCGTTTTTGCCGAGCAAGGATATGGAGTGGTATTTCTATAGCCCTCGGGATCGAAAGTACCCGAATGGGTCGAGAACGAATCGGGCAACAAAGGGTGGATACTGGAAAGCCACTGGGAAAGACCGAGTGGTTCAGTCGCAGAAACGAGCAGTTGGGATGAAGAAGACTTTGGTGTATTATAAAGGAAGAGCTCCTCATGGAGTTAGAACCAATTGGGTTATGCATGAATATCGTCTTCTCCATTCTCAACTCGCCACGGGGACAACGTCGTCTCCTTCATCGAAGGACTCCTATGCATTGTGTCGTGTATTTAAGAAGGCAACTATAGTACCCAAATCCATTGGGGAGAAGGCAAATGGAGTTGATGTCGAAGCACCAGTGTGGCAAATGGCGGACGAGCAAGATATGCAGGTTGATGACGGCGGTGCACCGGAAAGTTCGAGAGGAGGGATAGAAAGCAATGAAGATGGTGATAGTTTTGATCACTTTCTTTATGAATATAACCCTAAAATCTTCAGCTCTGAAAACTCTTCCTCCGATCTCACACAAGGGAATGTTGCCGACGACTTGCCGGCTCCGGTGGCCTCCGATAACGAAGCCAATAGTTCAGCTAACAATCTGTATCCAATTCACATTGATTGCCCTTCAAATTTTATGCAGATACAGAGCAATTTCATCGACCACGAGAATCTTCACTATCAACACCCTTACTATCCGCCATTAGAGCTCGAGGACTTCCCTCAGCTGAACATAATAGGGGAAACGAAGTCGTCAATGAAGCCCGAGTGCATTGACGAGTACATGAAGTTCGATAAGTTCAGAGACTCCATGAATGGAAGTTTAGAGGAGATTTTATCTCTTTGTAGTCTTCCCAATATGCAAGAAGATAATCATAATCTCCAACACTCTACCTTATTACAGTAA 1086 45.03 MAPMTLPPGFRFHPTDEELVAYYLDRKINGRSIELEIIPEIDLYKCEPWELPDKSFLPSKDMEWYFYSPRDRKYPNGSRTNRATKGGYWKATGKDRVVQSQKRAVGMKKTLVYYKGRAPHGVRTNWVMHEYRLLHSQLATGTTSSPSSKDSYALCRVFKKATIVPKSIGEKANGVDVEAPVWQMADEQDMQVDDGGAPESSRGGIESNEDGDSFDHFLYEYNPKIFSSENSSSDLTQGNVADDLPAPVASDNEANSSANNLYPIHIDCPSNFMQIQSNFIDHENLHYQHPYYPPLELEDFPQLNIIGETKSSMKPECIDEYMKFDKFRDSMNGSLEEILSLCSLPNMQEDNHNLQHSTLLQ 361
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 33491641 33496029 - ClCG02G018760.2 Cla02g01835 267961
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g01835 361 ProSiteProfiles NAC domain profile. 6 160 IPR003441 GO:0003677|GO:0006355
Cla02g01835 361 SUPERFAMILY NAC domain 3 160 IPR036093 GO:0003677|GO:0006355
Cla02g01835 361 MobiDBLite consensus disorder prediction 190 209 - -
Cla02g01835 361 PANTHER NAC DOMAIN-CONTAINING PROTEIN 86-LIKE 1 170 - -
Cla02g01835 361 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 1 170 - -
Cla02g01835 361 Pfam No apical meristem (NAM) protein 7 133 IPR003441 GO:0003677|GO:0006355
Cla02g01835 361 Gene3D NAC domain 15 163 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g01835 Cla-Chr2:33491641 Cla04g01221 Cla-Chr4:27328271 5.65E-86 dispersed
Cla07g00918 Cla-Chr7:25249106 Cla02g01835 Cla-Chr2:33491641 1.14E-58 dispersed
Cla02g01835 Cla-Chr2:33491641 Cla08g00802 Cla-Chr8:20423119 2.71E-62 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60704 PF02365 NAM 1.60E-39 No_clan Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g01835 - - cmo:103496277 701.819