Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cla02g01840 | ATGTCGAAAAGCCACGGCACGCCTGAAAAAGAAGCAGCTTTTGCTTTAGCTGCACTTATGGAGGTTCCTTTCCAGTACAAAGCAGTAACAGAAATGGGTCTTATAGGACATGTGACAGGAAAAACAAAACGCATTGTGCCACGACCCCCTCCAACACGTTATACTCGTCCTACACGGCTCACTCCCATACCTAGCAACACCTCCTCAGCTTCTGCATCTGATGAACAGAATCAGGTCTGCCCCATTTGCTTGACCGCGGGAAAGGACTTGGCCTTTGGATGCGGCCACATGTTGAGAGATTGA | 303 | 49.17 | MSKSHGTPEKEAAFALAALMEVPFQYKAVTEMGLIGHVTGKTKRIVPRPPPTRYTRPTRLTPIPSNTSSASASDEQNQVCPICLTAGKDLAFGCGHMLRD | 100 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 2 | 33526793 | 33527668 | - | ClCG02G018805.1 | Cla02g01840 | 267966 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cla02g01840 | 100 | MobiDBLite | consensus disorder prediction | 58 | 74 | - | - | |
| Cla02g01840 | 100 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE RGLG4 | 1 | 97 | - | - | |
| Cla02g01840 | 100 | MobiDBLite | consensus disorder prediction | 41 | 74 | - | - | |
| Cla02g01840 | 100 | PANTHER | COPINE FAMILY PROTEIN 1 | 1 | 97 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cla02g01840 | Cla-Chr2:33526793 | Cla10g01307 | Cla-Chr10:28015170 | 3.01E-18 | dispersed | |
| Cla02g01840 | Cla-Chr2:33526793 | Cla09g01893 | Cla-Chr9:36623816 | 4.46E-19 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cla02g01840 | K16280 | - | csv:101218058 | 145.976 |