Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g01841 ATGACCCAATCGCCGGTGCCTCCGTCGTTGGCTCCGCCGCAGCCACCGCCATTATACGGCTCCGGAGTTCAGGTCCGTTGCGCCGGCTGTCGTGATGTTTTGGTAGTGGCGCCTGGCCACACCGAGTTCTTCTGCCCATCTTGTCAATTACCTCAGATGTTGCCTCCTGAGCTTTTAGTTAGGGCCCACTCCAAGCCCCTTCCTCCTCCTCCGCTACCGCCGCCACCGCCGTCGCTTCCGCCGTCGATGCCCCTTCCCCCTCCTTTGTCCATACACCATGTACCTGCTCATGGCATTGATCCTACCAAGATGCAGCTCCCCTGTGCTAATTGCAAGGCGCTTCTTAATGTTCCTCATGGTTTAACTAGGTTCGTTTGTCCTCAGTGCGCGGTTGACCTCGCTGTCGATGTCTCCAAGCTCCATCAGTTCTTTCCCTCCCGGCCGCCTCCTGAGGAAGTCAACGAGGTAGCCATTGAAGTGGAAAGAGAAGAAGATGAAGGTGGTACAGTGGGAGAGACATTTACAGAATATCACCCTCCCAAGCTATCCATAGGACCACCTCACCCGGACCCAGTTGTGGAAACATCCTCCTTATCTGCTGTCCAGCCTCCTGAACCTACTTATGATTTAAAAATCAAGGATGATTTAGAAAAGTCAAAAGCTCTTTCATGCTTACAAATTGAGACCTTGGTATATGCTTCTCAGAGACATATGCACCATCTCCCAAATGAGACCAGGGCGGGATTCTTTATTGGAGATGGAGCTGGTGTTGGTAAAGGTCGGACCATTGCAGGTTTATTGTGGGAAAATTGGCACCATGGGAGGAGGAAAGCATTGTGGATTTCGGTTGGCTCAGATTTGAAGTATGATGCTAGGAGAGACTTAGATGATGTAGGTGCAACGTGCATTAAAGTGCATGCTTTGAACAAGCTACCTTATTCAAAGCTTGACTCAAAGTCTGTGGGTATTAGAGAAGGAGTTGTCTTTTTGACATATAGCAGCCTCATAGCATCCTCCGAACGAGGCCGTTCTCGCCTGCAGCAGCTTGTTCAGTGGTGTGGAACAGGATTTGATGGTCTCATCATATTTGATGAGTGCCATAAAGCCAAAAATTTGGTACCAGAAGCTGGAAGCCAGCCAACTAGGACAGGAGAAGCCGTTCTAGAGCTGCAGGATCGACTTCCTGAAGCTCGTATAATTTACTGCTCAGCCACCGGTGCATCTGAGCCACGCAATATGGGCTATATGGTCCGACTCGGGCTTTGGGGAACTGGAACTTCCTTTATTGACTTCAGGGATTTTTTAGGTGCATTGGAGCGAGGGGGTGTTGGGGCTTTAGAACTTGTTGCCATGGACATGAAAGCAAGGGGTATGTATTTGTGTCGCACATTGAGCTACCGAGGAGCTGAATTTGAGATCGTGGAAGCACCACTAGAAGCTGAGATGATGGAAATGTATACATTAGCAGCTGAATTTTGGGCGAAGTTGCGGGTAGAATTGATGACAGCAAGTGCGTATGTTACTAGTGACAAGCCTAGCACCAACCAACTTTGGCGATTATTTTGGGCAAGCCATCAGCGTTTCTTCAGGCATATGTGTATGTCTGCCAAGGTTCCTGCTACTGTGAGACTAGCTAAGCAAGCATTATTGGAAGATAAATGTGTTGTCATTGGCTTGCAAAGTACTGGAGAGGCACGCACTGAGGAAGCTGTGACAAAATATGGCCTTGAGCTTGATGATTTTGTTTCTGGACCTCGAGAACTATTGCTTAAATTTGTGGAAGAAAATTACCCTTTGCCTGAAAAGCCTGAAACTCTACCTGAGGAGGGAAGTGTCAAGGAACTTCAAAGGAAGAGACACTCGGCAACTCCTGGCATATCACTAAATGGGAGGGTAAGGAAAGCTGCAAAGTGGAAACCTCCAAGTGATGTCGAAAGTGACGAAGAATCTGAAATTGATTCTGCTCCCGAATCTACCGAATCAGATGATGAGTTTCAGATTTGTGAGATTTGCAATACTGAAGAGGAAAGGAAAAAGTTACTTCGATGTTCCTGTTGTGAGCAACTTTTTCATCCTGCATGTCTCGACCCTCCTCTCTTGGATACAGAAACTGCAGAATGGTCATGTCAGTCTTGCAAGGAAAAGACCGATGAGTATCTTAAAGAAAGAAAAGCTGTTATAGCTGAACTTTTGAAAAGGTATGATGCTGCTTCGGATCGTAAGTCTAATTTGTTGGCAATTATTCGTTCATTGAATCTTCCAAACAATCCTTTGGATGATATTATCGATCAGCTTGGTGGCCCTGATAAGGTAGCGGAAATAACTGGAAGAAGGGGAATGCTTGTAAGGGCCCCCAACGGAAAGGGTGTTACTTACCAGCCACGAAACTCGAAGGATGTGACTATGGAGATGGTCAACATGCATGAGAAACAACTGTTTATGGATGGTAAGAAGTTTGTTGCTATCATTTCTGAAGCTGGATCAGCTGGTGTTTCACTGCAGGCCGACAGAAGAGCTGCAAATCAGAAAAGAAGAGTTCATTTTACTTTAGAACTCCCTTGGAGTGCTGATCGAGCCATTCAACAATTTGGACGGACTCATCGCTCTAATCAAGCTTCAGCACCCGAATACAGGCTGCTTTTCACAAATCTCGGTGGAGAACGCAGGTTTGCATCAATTGTTGCCAAGAGATTAGAATCACTTGGAGCCTTAACCCAAGGAGATCGAAGGGCTGGGTTGTCACTCAGTGCATATAATTATGACAGTGCTTATGGGAAAACGGCCTTGACGATGATGTACAGAGGAATAATGGAGCAGGATGCCTTGCCCGTTGAACCTCCTGGTTGCTCATCTGAGAAACCTGATTCAATCCGTGATTTTATTGAGAATGCAAAAGCTGCTCTTAATTCTGTGGGAATAATTAGGGACACCGTACTTGCGTCTGGGAAGGACTTTGGAAAGACCTCTGGTCGTATTGTTGAGTCAGACATGAATGATATTGGACGTTTTCTTAATCGGCTTTTGGGCCTCCCGCCTGAGATTCAAAATAGGATTTTTGAGTTATTTGTCAGCATATTGGATCTTCTAATTCAGAAAGCACGCATTGAAGGGAATCTTGATTCTGGAATTGTTGATATGAGAGCCAATGTTATTGAATTAAGAGGAAGTCCAAAGACAGTTCATGTTGATCCTGTCTCTGGGGCATCGACTATGCTGTTTACTTTCTCTTTGGATCGTGGTATAACTTGGGAGTCTGCGAGCACCATTCTTGATGAGAAGCAAAAGGATGGGCTTGGTTCAACCAATGATGGGTTCTATGAATCCAGGAGGGACTGGTTGGGAAGATGCCACATCATATTAGCCTTTGAAAGTTCTGTTCCTGGAATGTATAAAATTGTCCGCCCAGCTGTTGGGGAGTCACTAAGGGAAATGCCTCTCTCTGAGTTACGAAACAAATATCGAAAAACATCATCTTTAGAGAAGGCTCGTAATGGGTGGGAAGATGAGTATGATATTTCCTCAAAACAGTGCATGCACGGACCAAAGTGTAAGCTTGGCAACTTTTGTACGGTTGGCAGGAGAATACAGGAAGTTAATGTTTTGGGTGGCCTTATTCTTCCTGTTTGGGGAACTATTGAAAATGCCCTTTCTAAGCAGGCCCGCCAAAGTCATCAGCGGCTTCGTGTAGTACGTATAGAAACCACAACAGATAAACAGAGAATAGTTGGGCTGTTTGTTCCAAATGCAGCTGTTGAATCAGTGCTTCAAGGTTTAGCCTGGGTACAAGATGTAGATGCTTGA 3801 45.88 MTQSPVPPSLAPPQPPPLYGSGVQVRCAGCRDVLVVAPGHTEFFCPSCQLPQMLPPELLVRAHSKPLPPPPLPPPPPSLPPSMPLPPPLSIHHVPAHGIDPTKMQLPCANCKALLNVPHGLTRFVCPQCAVDLAVDVSKLHQFFPSRPPPEEVNEVAIEVEREEDEGGTVGETFTEYHPPKLSIGPPHPDPVVETSSLSAVQPPEPTYDLKIKDDLEKSKALSCLQIETLVYASQRHMHHLPNETRAGFFIGDGAGVGKGRTIAGLLWENWHHGRRKALWISVGSDLKYDARRDLDDVGATCIKVHALNKLPYSKLDSKSVGIREGVVFLTYSSLIASSERGRSRLQQLVQWCGTGFDGLIIFDECHKAKNLVPEAGSQPTRTGEAVLELQDRLPEARIIYCSATGASEPRNMGYMVRLGLWGTGTSFIDFRDFLGALERGGVGALELVAMDMKARGMYLCRTLSYRGAEFEIVEAPLEAEMMEMYTLAAEFWAKLRVELMTASAYVTSDKPSTNQLWRLFWASHQRFFRHMCMSAKVPATVRLAKQALLEDKCVVIGLQSTGEARTEEAVTKYGLELDDFVSGPRELLLKFVEENYPLPEKPETLPEEGSVKELQRKRHSATPGISLNGRVRKAAKWKPPSDVESDEESEIDSAPESTESDDEFQICEICNTEEERKKLLRCSCCEQLFHPACLDPPLLDTETAEWSCQSCKEKTDEYLKERKAVIAELLKRYDAASDRKSNLLAIIRSLNLPNNPLDDIIDQLGGPDKVAEITGRRGMLVRAPNGKGVTYQPRNSKDVTMEMVNMHEKQLFMDGKKFVAIISEAGSAGVSLQADRRAANQKRRVHFTLELPWSADRAIQQFGRTHRSNQASAPEYRLLFTNLGGERRFASIVAKRLESLGALTQGDRRAGLSLSAYNYDSAYGKTALTMMYRGIMEQDALPVEPPGCSSEKPDSIRDFIENAKAALNSVGIIRDTVLASGKDFGKTSGRIVESDMNDIGRFLNRLLGLPPEIQNRIFELFVSILDLLIQKARIEGNLDSGIVDMRANVIELRGSPKTVHVDPVSGASTMLFTFSLDRGITWESASTILDEKQKDGLGSTNDGFYESRRDWLGRCHIILAFESSVPGMYKIVRPAVGESLREMPLSELRNKYRKTSSLEKARNGWEDEYDISSKQCMHGPKCKLGNFCTVGRRIQEVNVLGGLILPVWGTIENALSKQARQSHQRLRVVRIETTTDKQRIVGLFVPNAAVESVLQGLAWVQDVDA 1266
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 33535376 33570405 + ClCG02G018810.2 Cla02g01841 267967
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g01841 1266 MobiDBLite consensus disorder prediction 632 661 - -
Cla02g01841 1266 SMART PHD_3 667 713 IPR001965 -
Cla02g01841 1266 Pfam C-terminal domain on Strawberry notch homologue 756 1045 IPR026937 -
Cla02g01841 1266 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 614 726 IPR013083 -
Cla02g01841 1266 ProSitePatterns Zinc finger PHD-type signature. 668 712 IPR019786 -
Cla02g01841 1266 MobiDBLite consensus disorder prediction 646 661 - -
Cla02g01841 1266 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 811 911 IPR027417 -
Cla02g01841 1266 MobiDBLite consensus disorder prediction 61 83 - -
Cla02g01841 1266 Pfam PHD-finger 667 715 IPR019787 -
Cla02g01841 1266 MobiDBLite consensus disorder prediction 62 83 - -
Cla02g01841 1266 PANTHER STRAWBERRY NOTCH-RELATED 22 1265 IPR026741 GO:0006355
Cla02g01841 1266 ProSiteProfiles Zinc finger PHD-type profile. 665 715 IPR019787 -
Cla02g01841 1266 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 198 430 IPR027417 -
Cla02g01841 1266 MobiDBLite consensus disorder prediction 600 620 - -
Cla02g01841 1266 Gene3D - 217 417 IPR027417 -
Cla02g01841 1266 Pfam P-loop containing NTP hydrolase pore-1 187 486 IPR039187 -
Cla02g01841 1266 SUPERFAMILY FYVE/PHD zinc finger 657 718 IPR011011 -
Cla02g01841 1266 PANTHER OS08G0223700 PROTEIN 22 1265 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g01841 Cla-Chr2:33535376 Cla06g01356 Cla-Chr6:27056005 1.61E-06 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60705 PF13872 AAA_34 6.60E-133 CL0023 Cla TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g01841 - - csv:101218295 2350.86