Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g01844 ATGTTAGGTTACAGGAAGCCAATGTCGCCTATTTCACATTTTTGTTTCTTCTTCCTCTTCTTCTTCCTCTCTGTTCACAACGCATTGGGCGGCCATGACCAAGAAACTGTAAAACTCGATCTACTTCACCGTCACCATCCACAAGTCGCCGAGAAGCTTCACGGCAATATGAAAGTTGAAGATCTCAACGATCGGATCAAGGATATTCACGATCACGACCTCAAACGATATCAAACCATCTCCACATCGTTGAACCGGAAGCAAATTGAGGAGAAATTGAAGGCGGAAGCGGAGGTTGAGGCAGCGAAGGATCCGATACTTCCACCGACGTCGCCTACGCCGATAGGGCTGAAAATGATATCAGGTTCAGATTATGGAAGTAGTGAGTATTTTGTTCAATTGAAAGTGGGAACACCGCCTCAGACGTTCATGTTGATCGTGGATACCGGAAGCGATCTAACGTGGATAAAATGTAGATATCGGAGGTGTATCGGAAATTGTAGCAGCAAGGCGAATCATAAGAGCCGAAACGAACGGAAAATGAGATTTAGAAATGCGTTTTTGGCAAATTATTCCTCGTCTTTCAAGACCATTCATTGCAGCTCCACGACTTGTACCACTGACCTCGCAGATCTGTTCTCAATTGGGGAATGCAAAACCCCAACTAGCCCTTGTATCTATGATTACAGGTACGTAAGATTGATTCACCAAAAACTAAATTCCTTACCCCTCAACTCAACTGACTTATTTAGAGTTGGAGGGGGCGAGGTGCGGTGCAACCCGACTACACCTAACTACGCAGGAGGAGCAAGTGCAAAGGGAATATTCGCAATCGAGACCCTAACCGTAGACCTAACAAACGGAAAAGAAAAACAGCTCCACAATTCTATAATCGGCTGCACCGAATCAGTCCAAGGAAGGATATTTGGCGGAGCCGACGGCGTCATTGGCTTAGGCACTAGCCCCTACTCTTTTACCTACAAAGCCGCCGAAAACGCCAACGGCGGCGGCTTCTCCTACTGCCTTGTCGACCATCTCAGCCACCACACCGCCACCAGCTACTTCATCCTCGGCGCCCCTTCCCCCTCCGCTTCCGCTGCTGCCTCCTCCGTCGTCCCTTCTGGCAACATGACCTTCACCAAACTCTTCGTCGGCGACCCTTACAACAGCTTCTACGGCGTCGATCTCATTGCAATCTCCGCCGACGGCGTCATGCTCAACATTCCTCCCCGCGTTTGGGACATCAATTCCGGCGGCGGTACCATCCTCGACTCCGGAACTAGCCTCACCATGCTGGCGGCGCCGGCGTTCGATATGGTCATGGAAGCTCTGACTCCTAAGCTGAAGCATTTCGAGCAAATTGAAGTCGAACCCTTCAAATTTTGCTTCAATAATAGCCAGTACACCCATGAAATGGCCCCGAAGATCCGATTCCATTTCGGCGACGGCACGATGTTCCAGCCGCCGGTGAAAAGCTACGTTGTGTCGGCGGGTGAATATATTAGCTGTATTGGGTTCGTTTCTATGCCTTTTCCGGCCTACAATATCATCGGGAATATTCTTCAGCAAAATCACCTTTGGCAATTTGATTTCTTTAGGAGAAAAGTCGGTTTTGCCCCCTCTGAATGCGTCTAA 1635 49.05 MLGYRKPMSPISHFCFFFLFFFLSVHNALGGHDQETVKLDLLHRHHPQVAEKLHGNMKVEDLNDRIKDIHDHDLKRYQTISTSLNRKQIEEKLKAEAEVEAAKDPILPPTSPTPIGLKMISGSDYGSSEYFVQLKVGTPPQTFMLIVDTGSDLTWIKCRYRRCIGNCSSKANHKSRNERKMRFRNAFLANYSSSFKTIHCSSTTCTTDLADLFSIGECKTPTSPCIYDYRYVRLIHQKLNSLPLNSTDLFRVGGGEVRCNPTTPNYAGGASAKGIFAIETLTVDLTNGKEKQLHNSIIGCTESVQGRIFGGADGVIGLGTSPYSFTYKAAENANGGGFSYCLVDHLSHHTATSYFILGAPSPSASAAASSVVPSGNMTFTKLFVGDPYNSFYGVDLIAISADGVMLNIPPRVWDINSGGGTILDSGTSLTMLAAPAFDMVMEALTPKLKHFEQIEVEPFKFCFNNSQYTHEMAPKIRFHFGDGTMFQPPVKSYVVSAGEYISCIGFVSMPFPAYNIIGNILQQNHLWQFDFFRRKVGFAPSECV 544
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 33596883 33598815 - ClCG02G018840.2 Cla02g01844 267970
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g01844 544 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 145 156 IPR001969 GO:0004190|GO:0006508
Cla02g01844 544 PANTHER OS07G0603500 PROTEIN-RELATED 15 233 - -
Cla02g01844 544 PANTHER OS07G0603500 PROTEIN-RELATED 265 543 - -
Cla02g01844 544 Pfam Xylanase inhibitor N-terminal 130 232 IPR032861 -
Cla02g01844 544 Pfam Xylanase inhibitor N-terminal 263 358 IPR032861 -
Cla02g01844 544 Pfam Xylanase inhibitor C-terminal 392 539 IPR032799 -
Cla02g01844 544 ProSiteProfiles Peptidase family A1 domain profile. 130 539 IPR033121 -
Cla02g01844 544 CDD pepsin_A_like_plant 129 543 IPR034161 -
Cla02g01844 544 Gene3D Acid Proteases 116 358 IPR021109 -
Cla02g01844 544 PRINTS Pepsin (A1) aspartic protease family signature 421 432 IPR001461 GO:0004190|GO:0006508
Cla02g01844 544 PRINTS Pepsin (A1) aspartic protease family signature 515 530 IPR001461 GO:0004190|GO:0006508
Cla02g01844 544 PRINTS Pepsin (A1) aspartic protease family signature 136 156 IPR001461 GO:0004190|GO:0006508
Cla02g01844 544 PANTHER ASPARTIC PROTEINASE NANA, CHLOROPLAST 15 233 - -
Cla02g01844 544 PANTHER ASPARTIC PROTEINASE NANA, CHLOROPLAST 265 543 - -
Cla02g01844 544 SUPERFAMILY Acid proteases 122 543 IPR021109 -
Cla02g01844 544 Gene3D Acid Proteases 365 544 IPR021109 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g01844 Cla-Chr2:33596883 Cla11g01610 Cla-Chr11:29748980 1.85E-45 dispersed
Cla02g01844 Cla-Chr2:33596883 Cla04g01105 Cla-Chr4:26248267 4.27E-34 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g01844 - - csv:101204452 768.844