Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g01844 ATGTTAGGTTACAGGAAGCCAATGTCGCCTATTTCACATTTTTGTTTCTTCTTCCTCTTCTTCTTCCTCTCTGTTCACAACGCATTGGGCGGCCATGACCAAGAAACTGTAAAACTCGATCTACTTCACCGTCACCATCCACAAGTCGCCGAGAAGCTTCACGGCAATATGAAAGTTGAAGATCTCAACGATCGGATCAAGGATATTCACGATCACGACCTCAAACGATATCAAACCATCTCCACATCGTTGAACCGGAAGCAAATTGAGGAGAAATTGAAGGCGGAAGCGGAGGTTGAGGCAGCGAAGGATCCGATACTTCCACCGACGTCGCCTACGCCGATAGGGCTGAAAATGATATCAGGTTCAGATTATGGAAGTAGTGAGTATTTTGTTCAATTGAAAGTGGGAACACCGCCTCAGACGTTCATGTTGATCGTGGATACCGGAAGCGATCTAACGTGGATAAAATGTAGATATCGGAGGTGTATCGGAAATTGTAGCAGCAAGGCGAATCATAAGAGCCGAAACGAACGGAAAATGAGATTTAGAAATGCGTTTTTGGCAAATTATTCCTCGTCTTTCAAGACCATTCATTGCAGCTCCACGACTTGTACCACTGACCTCGCAGATCTGTTCTCAATTGGGGAATGCAAAACCCCAACTAGCCCTTGTATCTATGATTACAGGTACGTAAGATTGATTCACCAAAAACTAAATTCCTTACCCCTCAACTCAACTGACTTATTTAGAGTTGGAGGGGGCGAGGTGCGGTGCAACCCGACTACACCTAACTACGCAGGAGGAGCAAGTGCAAAGGGAATATTCGCAATCGAGACCCTAACCGTAGACCTAACAAACGGAAAAGAAAAACAGCTCCACAATTCTATAATCGGCTGCACCGAATCAGTCCAAGGAAGGATATTTGGCGGAGCCGACGGCGTCATTGGCTTAGGCACTAGCCCCTACTCTTTTACCTACAAAGCCGCCGAAAACGCCAACGGCGGCGGCTTCTCCTACTGCCTTGTCGACCATCTCAGCCACCACACCGCCACCAGCTACTTCATCCTCGGCGCCCCTTCCCCCTCCGCTTCCGCTGCTGCCTCCTCCGTCGTCCCTTCTGGCAACATGACCTTCACCAAACTCTTCGTCGGCGACCCTTACAACAGCTTCTACGGCGTCGATCTCATTGCAATCTCCGCCGACGGCGTCATGCTCAACATTCCTCCCCGCGTTTGGGACATCAATTCCGGCGGCGGTACCATCCTCGACTCCGGAACTAGCCTCACCATGCTGGCGGCGCCGGCGTTCGATATGGTCATGGAAGCTCTGACTCCTAAGCTGAAGCATTTCGAGCAAATTGAAGTCGAACCCTTCAAATTTTGCTTCAATAATAGCCAGTACACCCATGAAATGGCCCCGAAGATCCGATTCCATTTCGGCGACGGCACGATGTTCCAGCCGCCGGTGAAAAGCTACGTTGTGTCGGCGGGTGAATATATTAGCTGTATTGGGTTCGTTTCTATGCCTTTTCCGGCCTACAATATCATCGGGAATATTCTTCAGCAAAATCACCTTTGGCAATTTGATTTCTTTAGGAGAAAAGTCGGTTTTGCCCCCTCTGAATGCGTCTAA 1635 49.05 MLGYRKPMSPISHFCFFFLFFFLSVHNALGGHDQETVKLDLLHRHHPQVAEKLHGNMKVEDLNDRIKDIHDHDLKRYQTISTSLNRKQIEEKLKAEAEVEAAKDPILPPTSPTPIGLKMISGSDYGSSEYFVQLKVGTPPQTFMLIVDTGSDLTWIKCRYRRCIGNCSSKANHKSRNERKMRFRNAFLANYSSSFKTIHCSSTTCTTDLADLFSIGECKTPTSPCIYDYRYVRLIHQKLNSLPLNSTDLFRVGGGEVRCNPTTPNYAGGASAKGIFAIETLTVDLTNGKEKQLHNSIIGCTESVQGRIFGGADGVIGLGTSPYSFTYKAAENANGGGFSYCLVDHLSHHTATSYFILGAPSPSASAAASSVVPSGNMTFTKLFVGDPYNSFYGVDLIAISADGVMLNIPPRVWDINSGGGTILDSGTSLTMLAAPAFDMVMEALTPKLKHFEQIEVEPFKFCFNNSQYTHEMAPKIRFHFGDGTMFQPPVKSYVVSAGEYISCIGFVSMPFPAYNIIGNILQQNHLWQFDFFRRKVGFAPSECV 544
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 33596883 33598815 - ClCG02G018840.2 Cla02g01844 267970

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g01844 544 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 145 156 IPR001969 GO:0004190|GO:0006508
Cla02g01844 544 PANTHER OS07G0603500 PROTEIN-RELATED 15 233 - -
Cla02g01844 544 PANTHER OS07G0603500 PROTEIN-RELATED 265 543 - -
Cla02g01844 544 Pfam Xylanase inhibitor N-terminal 130 232 IPR032861 -
Cla02g01844 544 Pfam Xylanase inhibitor N-terminal 263 358 IPR032861 -
Cla02g01844 544 Pfam Xylanase inhibitor C-terminal 392 539 IPR032799 -
Cla02g01844 544 ProSiteProfiles Peptidase family A1 domain profile. 130 539 IPR033121 -
Cla02g01844 544 CDD pepsin_A_like_plant 129 543 IPR034161 -
Cla02g01844 544 Gene3D Acid Proteases 116 358 IPR021109 -
Cla02g01844 544 PRINTS Pepsin (A1) aspartic protease family signature 421 432 IPR001461 GO:0004190|GO:0006508
Cla02g01844 544 PRINTS Pepsin (A1) aspartic protease family signature 515 530 IPR001461 GO:0004190|GO:0006508
Cla02g01844 544 PRINTS Pepsin (A1) aspartic protease family signature 136 156 IPR001461 GO:0004190|GO:0006508
Cla02g01844 544 PANTHER ASPARTIC PROTEINASE NANA, CHLOROPLAST 15 233 - -
Cla02g01844 544 PANTHER ASPARTIC PROTEINASE NANA, CHLOROPLAST 265 543 - -
Cla02g01844 544 SUPERFAMILY Acid proteases 122 543 IPR021109 -
Cla02g01844 544 Gene3D Acid Proteases 365 544 IPR021109 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g01844 - - - csv:101204452 768.844
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g01844 Cla-Chr2:33596883 Cla11g01610 Cla-Chr11:29748980 1.85E-45 dispersed
Cla02g01844 Cla-Chr2:33596883 Cla04g01105 Cla-Chr4:26248267 4.27E-34 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g1187 . . . . . . . . . . . . . . . . Cpe16g00700 . . . . . . . Cla02g01844 Cam02g1950 Cec02g1977 Cco02g2016 Clacu02g1931 Cmu02g1880 Cre02g2192 . . . . . . . Cme11g01660 . . . . . . . . Sed01g0777 . . . . . . . Cpe05g01021 Bhi10g00915 Tan05g0569 Cmetu11g0770 . Hepe08g0662 . . . . . . . . . . Csa06g01136 Chy11g01056 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009402 0 1 1 1 1 1 0 1 1 1 1 1 3 1 1 3 1 1 3 1 1 1 1 1 1 1 1 1 1 1 34