Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g01845 ATGAAGCTCCGACCAGATTTTCTTCGACCCATAATCGCCTATGTAGTCCCAAAACCTCCATGGTTCCATTTATTTCATTCGCCCACTGACCCAATCGCCACTTCCAATGAGGTCTCCACCATAATCGAAACTATTGATCCTTTCGAAGATGGATTGGAAGTCATATCGCCCCATATTTCGTCTGATGTAATTACCTCCGTCATTGAAGATCAATCGAATCCCCGACTTGGATTTCGACTTTTTATCTGGTCGTTAAGGAGAAAGAGTCTCTGCTGCAATGCCTCGCAGAATTTTATCATCGACAGGTTAGTAAAGGACAATGCCTTCGAATTATATTGGAAAACTCTTCAAGAGCTTAAGGATTCAGCAATTGAAATTCCATCGGATGCTTTCTCTGTGTTGATTGAGGCATACTCAAAAGCGGGCATGGATGAGAAGGCCGTTGAATCATTTGGTCTGATGCGGGATTTTGACTGTAAGCCCAACATTTTTGCTTTCAATTTGATTTTGCATGTTTTGGTGCGAAAAGAAGCATTTTTGTTAGCTTTAGCAGTGTATAATCAGATGCTGAAATGTAATTTGAATCCGAATGTGGTTACCTACAGCATATTGATTCATGGATTCTGTAAATCTAGTAAAACTCAAGATGCCCTTGTACTTTTTGATGAAATGACCTATAGAGGAATATTGCCCAACGAGATAACTTATTCGATTGTTCTTTCTGGACTGTGTCAAGCTAAGAAAATTGATGATGCCCAGAGATTGTTCAGTAAGATGAGAGCGATTGGGTGTAGTCCAGATGTAATAACTTATAATGTTTTGCTTAATGGATTTTGTAAGTTAGGTTATTTGGATGAAGCTTTTTCATTGTTGCAATCATTTGAAAAGGATGGCCATATTCTTGGAGTTAATGGGTATAGTTGTTTGATTAATGGCTTGTTTAGGGCTAGGAGATATGACGAAGCACATATGTGGTACCAGAAAATGTTGAGGGAAAACATCAAGCCCGATGTTATCTTGTATACTATTATGATCCAAGGTTTATCACAAGAAGGTCGGGTTACTGATGCATTGGCACTGTTGGATGAGATGACAGAAAGAGGGCTTAGTCCAGATACTGCTTGTTACAATGCTTTAATTAAAGGGTTTTGTGATATGGGTCATTTGGATAAGGCTCAGTCCCTTCGACTTGAGATTTCAAAGCACGACTGTTTCCCTGATAATCACACATACTCCATTCTCATTTGTGGTATGTGCAAGAATGGGCTAATAAGTGAGGCACAACATATATTTAATGAAATGGAGAAGCTTGGATGCGTTCCTTCTATAGTGACCTTCAATTCTCTCATTGATGGACTTTGCAAAGCCGGTAAGCTTCAGGAAGCTTACCTATTATTTTACAAAATGGAGATAGGAAGAAAACCTTCTTTGTTTCTTCGGCTTTCTCAGGGCGCCAATAAGGTTCTTGACAATGCCAGTCTCCAAGTTATGATCCAGCAATTATGTGAGTCAGGATTGATTCTTAAGGCCTACAAGCTTCTTATGCAGCTAGTTGAGAGTGGGGTTTTGCCAGATATTAGGACTTATAACATCCTAATCAATGGATTATGCAAGAATAACAATATTAATGGTGGTTTTAAGCTCTTCAAGGCCATGCAGCTCAAAGGACGCTTGCCAGATTCGGTTACATACGGGACTCTAATAGATGGGCTCTATAGAGTTGGTAGGGATGAGGATGCACTAGGAATTTTTGAACAAATGGTAAAGAATGGGTGCGAGCCTGATTCTTCTATTTACAAGTCCATCATGACTTGGTCGTGTCGAAAAAAGAAGGTTTCACTAGCTTTTAGTGTTTGGATGAAGTATCTGAGGAATTTTCGTGGCTGGGAAGATGAAAAGGTAGCAGTAGTAGCGGAAAGTTTCAATAAAGGAGAGCTTGAGACAACAATTCAGAGATTAATTGAAATGGACATGATATCAAAAGATTTCGACTTAGCTCCATACACCATTTTTCTCATTGGATTGTGTCAAGCCGAGAGGGTTTCCGAAGCCTTTGCTATATTTTCTGTTCTCAAGGACTTCAAGATGAATAAACTGAGAACACCAACACAAGGTGAACGAGAGAAAACACAAACCAGAGTCAAAACAGCCATAGAGATGGACGGAGATCTGCCGCCGGCACCGGCTCCGTTGTCCATCCACCCGGCCGTAGCACCGCTATCATTCTTACTCGGAACATGGAGAGGCAGAGGCGACGGGGGATTCCCCACCATTAATTCCTTCTCTTACGGCGAGGAGCTTCACTTCTCCCATTCCGGCAAGCCGGTGATTTCCTACACTCAAAAGACTTGGAAACTCGATTCTAGAGAGCCAATGCACGCTGAGAGTGGCTATTGGCGTCCCAAGCCCGATGGTACCATTGAGGTAGTCATCGCTCAAAGTACTGGTATCGTTGAAGTTCAGTCAATTGCAAGGTCAGATTCTGCAGAGTTGCAACCGCGTGCCAACTGTTCAATGAAATGCTCAACTCAAATGTTGTCTCATGGACCTCACTCATGGCGGTTATATCGAGATGGTGGGCTGAGCACAGCTCTTTCACTGTTTGGGGCAATGCCGAGAAGTCCAGTTGTTCTCAACGACTTCACTTTTGTGAATGCAATCAAGGCCTGTTTGATCCTTTCAAATTTAAGAAATGGTGAAAAGTTCCATGCCTATGTTGAGATTTTGGTTTTGGAGCTAATATTATGGTCTATTCCTCGCTTATTGATATGTATGGAAGTTGATTTCTGCTTATGCTCAGAATGCACATGGCAACGATGTGTTAACAGTAGGGAGTTCAGTTGTTTGAGTTATGAACATCCAAATCCTAGTATGTTAGCTAGTGTGAGTAGTGCTTGTACAGGCTTGGATAGGCTGGTTTCAGGAAAAGTCGTAGTGCAGTGA 2943 41.56 MKLRPDFLRPIIAYVVPKPPWFHLFHSPTDPIATSNEVSTIIETIDPFEDGLEVISPHISSDVITSVIEDQSNPRLGFRLFIWSLRRKSLCCNASQNFIIDRLVKDNAFELYWKTLQELKDSAIEIPSDAFSVLIEAYSKAGMDEKAVESFGLMRDFDCKPNIFAFNLILHVLVRKEAFLLALAVYNQMLKCNLNPNVVTYSILIHGFCKSSKTQDALVLFDEMTYRGILPNEITYSIVLSGLCQAKKIDDAQRLFSKMRAIGCSPDVITYNVLLNGFCKLGYLDEAFSLLQSFEKDGHILGVNGYSCLINGLFRARRYDEAHMWYQKMLRENIKPDVILYTIMIQGLSQEGRVTDALALLDEMTERGLSPDTACYNALIKGFCDMGHLDKAQSLRLEISKHDCFPDNHTYSILICGMCKNGLISEAQHIFNEMEKLGCVPSIVTFNSLIDGLCKAGKLQEAYLLFYKMEIGRKPSLFLRLSQGANKVLDNASLQVMIQQLCESGLILKAYKLLMQLVESGVLPDIRTYNILINGLCKNNNINGGFKLFKAMQLKGRLPDSVTYGTLIDGLYRVGRDEDALGIFEQMVKNGCEPDSSIYKSIMTWSCRKKKVSLAFSVWMKYLRNFRGWEDEKVAVVAESFNKGELETTIQRLIEMDMISKDFDLAPYTIFLIGLCQAERVSEAFAIFSVLKDFKMNKLRTPTQGEREKTQTRVKTAIEMDGDLPPAPAPLSIHPAVAPLSFLLGTWRGRGDGGFPTINSFSYGEELHFSHSGKPVISYTQKTWKLDSREPMHAESGYWRPKPDGTIEVVIAQSTGIVEVQSIARSDSAELQPRANCSMKCSTQMLSHGPHSWRLYRDGGLSTALSLFGAMPRSPVVLNDFTFVNAIKACLILSNLRNGEKFHAYVEILVLELILWSIPRLLICMEVDFCLCSECTWQRCVNSREFSCLSYEHPNPSMLASVSSACTGLDRLVSGKVVVQ 980
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 33611790 33617656 - ClCG02G018850.2 Cla02g01845 267971

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g01845 980 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 337 371 IPR002885 -
Cla02g01845 980 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 407 441 IPR002885 -
Cla02g01845 980 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 490 524 IPR002885 -
Cla02g01845 980 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 372 406 IPR002885 -
Cla02g01845 980 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 232 266 IPR002885 -
Cla02g01845 980 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 267 301 IPR002885 -
Cla02g01845 980 CDD lipocalin_heme-bd-THAP4-like 737 821 IPR014878 -
Cla02g01845 980 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 525 559 IPR002885 -
Cla02g01845 980 Pfam THAP4-like, heme-binding beta-barrel domain 737 821 IPR014878 -
Cla02g01845 980 Gene3D - 732 866 IPR012674 -
Cla02g01845 980 Gene3D Tetratricopeptide repeat domain 60 180 IPR011990 GO:0005515
Cla02g01845 980 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 162 196 IPR002885 -
Cla02g01845 980 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 560 594 IPR002885 -
Cla02g01845 980 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 442 476 IPR002885 -
Cla02g01845 980 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED 26 690 - -
Cla02g01845 980 Gene3D Tetratricopeptide repeat domain 476 663 IPR011990 GO:0005515
Cla02g01845 980 Gene3D Tetratricopeptide repeat domain 181 331 IPR011990 GO:0005515
Cla02g01845 980 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 302 336 IPR002885 -
Cla02g01845 980 SUPERFAMILY TPR-like 163 591 IPR011990 GO:0005515
Cla02g01845 980 PANTHER OS09G0110200 PROTEIN 26 690 - -
Cla02g01845 980 TIGRFAM PPR: pentatricopeptide repeat domain 375 407 IPR002885 -
Cla02g01845 980 TIGRFAM PPR: pentatricopeptide repeat domain 234 268 IPR002885 -
Cla02g01845 980 TIGRFAM PPR: pentatricopeptide repeat domain 528 560 IPR002885 -
Cla02g01845 980 TIGRFAM PPR: pentatricopeptide repeat domain 130 163 IPR002885 -
Cla02g01845 980 TIGRFAM PPR: pentatricopeptide repeat domain 444 470 IPR002885 -
Cla02g01845 980 TIGRFAM PPR: pentatricopeptide repeat domain 340 373 IPR002885 -
Cla02g01845 980 TIGRFAM PPR: pentatricopeptide repeat domain 409 442 IPR002885 -
Cla02g01845 980 TIGRFAM PPR: pentatricopeptide repeat domain 269 299 IPR002885 -
Cla02g01845 980 TIGRFAM PPR: pentatricopeptide repeat domain 306 338 IPR002885 -
Cla02g01845 980 TIGRFAM PPR: pentatricopeptide repeat domain 562 596 IPR002885 -
Cla02g01845 980 TIGRFAM PPR: pentatricopeptide repeat domain 199 233 IPR002885 -
Cla02g01845 980 SUPERFAMILY Lipocalins 732 821 IPR012674 -
Cla02g01845 980 Pfam PPR repeat family 236 280 IPR002885 -
Cla02g01845 980 Pfam PPR repeat family 336 385 IPR002885 -
Cla02g01845 980 Pfam PPR repeat family 161 210 IPR002885 -
Cla02g01845 980 Pfam PPR repeat family 413 455 IPR002885 -
Cla02g01845 980 Pfam PPR repeat family 524 572 IPR002885 -
Cla02g01845 980 Pfam PPR repeat 306 334 IPR002885 -
Cla02g01845 980 Pfam PPR repeat 496 522 IPR002885 -
Cla02g01845 980 Pfam PPR repeat 130 159 IPR002885 -
Cla02g01845 980 Pfam PPR repeat 668 693 IPR002885 -
Cla02g01845 980 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 127 161 IPR002885 -
Cla02g01845 980 Gene3D Tetratricopeptide repeat domain 400 472 IPR011990 GO:0005515
Cla02g01845 980 Gene3D Tetratricopeptide repeat domain 332 399 IPR011990 GO:0005515
Cla02g01845 980 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 197 231 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g01845 - - - cmos:111451767 1221.84
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g01845 Cla-Chr2:33611790 Cla05g00814 Cla-Chr5:7953457 1.71E-21 dispersed
Cla02g01845 Cla-Chr2:33611790 Cla02g00278 Cla-Chr2:2741039 2.26E-11 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g1189 . . . . . . . . . . . . . . . . Cpe16g00699 . . . . . . . Cla02g01845 Cam02g1952 Cec02g1980 Cco02g2018 Clacu02g1934 Cmu02g1883 Cre02g2194 . . . . . . . Cme11g01662 . . . . . . . . Sed05g3323 . . . . . . . . Bhi10g00914 Tan05g0568 Cmetu11g1408 . Hepe08g0663 . . . . . . . . . . Csa06g01135 Chy11g01057 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010828 0 3 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 30