Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g01845 ATGAAGCTCCGACCAGATTTTCTTCGACCCATAATCGCCTATGTAGTCCCAAAACCTCCATGGTTCCATTTATTTCATTCGCCCACTGACCCAATCGCCACTTCCAATGAGGTCTCCACCATAATCGAAACTATTGATCCTTTCGAAGATGGATTGGAAGTCATATCGCCCCATATTTCGTCTGATGTAATTACCTCCGTCATTGAAGATCAATCGAATCCCCGACTTGGATTTCGACTTTTTATCTGGTCGTTAAGGAGAAAGAGTCTCTGCTGCAATGCCTCGCAGAATTTTATCATCGACAGGTTAGTAAAGGACAATGCCTTCGAATTATATTGGAAAACTCTTCAAGAGCTTAAGGATTCAGCAATTGAAATTCCATCGGATGCTTTCTCTGTGTTGATTGAGGCATACTCAAAAGCGGGCATGGATGAGAAGGCCGTTGAATCATTTGGTCTGATGCGGGATTTTGACTGTAAGCCCAACATTTTTGCTTTCAATTTGATTTTGCATGTTTTGGTGCGAAAAGAAGCATTTTTGTTAGCTTTAGCAGTGTATAATCAGATGCTGAAATGTAATTTGAATCCGAATGTGGTTACCTACAGCATATTGATTCATGGATTCTGTAAATCTAGTAAAACTCAAGATGCCCTTGTACTTTTTGATGAAATGACCTATAGAGGAATATTGCCCAACGAGATAACTTATTCGATTGTTCTTTCTGGACTGTGTCAAGCTAAGAAAATTGATGATGCCCAGAGATTGTTCAGTAAGATGAGAGCGATTGGGTGTAGTCCAGATGTAATAACTTATAATGTTTTGCTTAATGGATTTTGTAAGTTAGGTTATTTGGATGAAGCTTTTTCATTGTTGCAATCATTTGAAAAGGATGGCCATATTCTTGGAGTTAATGGGTATAGTTGTTTGATTAATGGCTTGTTTAGGGCTAGGAGATATGACGAAGCACATATGTGGTACCAGAAAATGTTGAGGGAAAACATCAAGCCCGATGTTATCTTGTATACTATTATGATCCAAGGTTTATCACAAGAAGGTCGGGTTACTGATGCATTGGCACTGTTGGATGAGATGACAGAAAGAGGGCTTAGTCCAGATACTGCTTGTTACAATGCTTTAATTAAAGGGTTTTGTGATATGGGTCATTTGGATAAGGCTCAGTCCCTTCGACTTGAGATTTCAAAGCACGACTGTTTCCCTGATAATCACACATACTCCATTCTCATTTGTGGTATGTGCAAGAATGGGCTAATAAGTGAGGCACAACATATATTTAATGAAATGGAGAAGCTTGGATGCGTTCCTTCTATAGTGACCTTCAATTCTCTCATTGATGGACTTTGCAAAGCCGGTAAGCTTCAGGAAGCTTACCTATTATTTTACAAAATGGAGATAGGAAGAAAACCTTCTTTGTTTCTTCGGCTTTCTCAGGGCGCCAATAAGGTTCTTGACAATGCCAGTCTCCAAGTTATGATCCAGCAATTATGTGAGTCAGGATTGATTCTTAAGGCCTACAAGCTTCTTATGCAGCTAGTTGAGAGTGGGGTTTTGCCAGATATTAGGACTTATAACATCCTAATCAATGGATTATGCAAGAATAACAATATTAATGGTGGTTTTAAGCTCTTCAAGGCCATGCAGCTCAAAGGACGCTTGCCAGATTCGGTTACATACGGGACTCTAATAGATGGGCTCTATAGAGTTGGTAGGGATGAGGATGCACTAGGAATTTTTGAACAAATGGTAAAGAATGGGTGCGAGCCTGATTCTTCTATTTACAAGTCCATCATGACTTGGTCGTGTCGAAAAAAGAAGGTTTCACTAGCTTTTAGTGTTTGGATGAAGTATCTGAGGAATTTTCGTGGCTGGGAAGATGAAAAGGTAGCAGTAGTAGCGGAAAGTTTCAATAAAGGAGAGCTTGAGACAACAATTCAGAGATTAATTGAAATGGACATGATATCAAAAGATTTCGACTTAGCTCCATACACCATTTTTCTCATTGGATTGTGTCAAGCCGAGAGGGTTTCCGAAGCCTTTGCTATATTTTCTGTTCTCAAGGACTTCAAGATGAATAAACTGAGAACACCAACACAAGGTGAACGAGAGAAAACACAAACCAGAGTCAAAACAGCCATAGAGATGGACGGAGATCTGCCGCCGGCACCGGCTCCGTTGTCCATCCACCCGGCCGTAGCACCGCTATCATTCTTACTCGGAACATGGAGAGGCAGAGGCGACGGGGGATTCCCCACCATTAATTCCTTCTCTTACGGCGAGGAGCTTCACTTCTCCCATTCCGGCAAGCCGGTGATTTCCTACACTCAAAAGACTTGGAAACTCGATTCTAGAGAGCCAATGCACGCTGAGAGTGGCTATTGGCGTCCCAAGCCCGATGGTACCATTGAGGTAGTCATCGCTCAAAGTACTGGTATCGTTGAAGTTCAGTCAATTGCAAGGTCAGATTCTGCAGAGTTGCAACCGCGTGCCAACTGTTCAATGAAATGCTCAACTCAAATGTTGTCTCATGGACCTCACTCATGGCGGTTATATCGAGATGGTGGGCTGAGCACAGCTCTTTCACTGTTTGGGGCAATGCCGAGAAGTCCAGTTGTTCTCAACGACTTCACTTTTGTGAATGCAATCAAGGCCTGTTTGATCCTTTCAAATTTAAGAAATGGTGAAAAGTTCCATGCCTATGTTGAGATTTTGGTTTTGGAGCTAATATTATGGTCTATTCCTCGCTTATTGATATGTATGGAAGTTGATTTCTGCTTATGCTCAGAATGCACATGGCAACGATGTGTTAACAGTAGGGAGTTCAGTTGTTTGAGTTATGAACATCCAAATCCTAGTATGTTAGCTAGTGTGAGTAGTGCTTGTACAGGCTTGGATAGGCTGGTTTCAGGAAAAGTCGTAGTGCAGTGA 2943 41.56 MKLRPDFLRPIIAYVVPKPPWFHLFHSPTDPIATSNEVSTIIETIDPFEDGLEVISPHISSDVITSVIEDQSNPRLGFRLFIWSLRRKSLCCNASQNFIIDRLVKDNAFELYWKTLQELKDSAIEIPSDAFSVLIEAYSKAGMDEKAVESFGLMRDFDCKPNIFAFNLILHVLVRKEAFLLALAVYNQMLKCNLNPNVVTYSILIHGFCKSSKTQDALVLFDEMTYRGILPNEITYSIVLSGLCQAKKIDDAQRLFSKMRAIGCSPDVITYNVLLNGFCKLGYLDEAFSLLQSFEKDGHILGVNGYSCLINGLFRARRYDEAHMWYQKMLRENIKPDVILYTIMIQGLSQEGRVTDALALLDEMTERGLSPDTACYNALIKGFCDMGHLDKAQSLRLEISKHDCFPDNHTYSILICGMCKNGLISEAQHIFNEMEKLGCVPSIVTFNSLIDGLCKAGKLQEAYLLFYKMEIGRKPSLFLRLSQGANKVLDNASLQVMIQQLCESGLILKAYKLLMQLVESGVLPDIRTYNILINGLCKNNNINGGFKLFKAMQLKGRLPDSVTYGTLIDGLYRVGRDEDALGIFEQMVKNGCEPDSSIYKSIMTWSCRKKKVSLAFSVWMKYLRNFRGWEDEKVAVVAESFNKGELETTIQRLIEMDMISKDFDLAPYTIFLIGLCQAERVSEAFAIFSVLKDFKMNKLRTPTQGEREKTQTRVKTAIEMDGDLPPAPAPLSIHPAVAPLSFLLGTWRGRGDGGFPTINSFSYGEELHFSHSGKPVISYTQKTWKLDSREPMHAESGYWRPKPDGTIEVVIAQSTGIVEVQSIARSDSAELQPRANCSMKCSTQMLSHGPHSWRLYRDGGLSTALSLFGAMPRSPVVLNDFTFVNAIKACLILSNLRNGEKFHAYVEILVLELILWSIPRLLICMEVDFCLCSECTWQRCVNSREFSCLSYEHPNPSMLASVSSACTGLDRLVSGKVVVQ 980
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 33611790 33617656 - ClCG02G018850.2 Cla02g01845 267971
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g01845 980 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 337 371 IPR002885 -
Cla02g01845 980 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 407 441 IPR002885 -
Cla02g01845 980 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 490 524 IPR002885 -
Cla02g01845 980 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 372 406 IPR002885 -
Cla02g01845 980 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 232 266 IPR002885 -
Cla02g01845 980 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 267 301 IPR002885 -
Cla02g01845 980 CDD lipocalin_heme-bd-THAP4-like 737 821 IPR014878 -
Cla02g01845 980 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 525 559 IPR002885 -
Cla02g01845 980 Pfam THAP4-like, heme-binding beta-barrel domain 737 821 IPR014878 -
Cla02g01845 980 Gene3D - 732 866 IPR012674 -
Cla02g01845 980 Gene3D Tetratricopeptide repeat domain 60 180 IPR011990 GO:0005515
Cla02g01845 980 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 162 196 IPR002885 -
Cla02g01845 980 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 560 594 IPR002885 -
Cla02g01845 980 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 442 476 IPR002885 -
Cla02g01845 980 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED 26 690 - -
Cla02g01845 980 Gene3D Tetratricopeptide repeat domain 476 663 IPR011990 GO:0005515
Cla02g01845 980 Gene3D Tetratricopeptide repeat domain 181 331 IPR011990 GO:0005515
Cla02g01845 980 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 302 336 IPR002885 -
Cla02g01845 980 SUPERFAMILY TPR-like 163 591 IPR011990 GO:0005515
Cla02g01845 980 PANTHER OS09G0110200 PROTEIN 26 690 - -
Cla02g01845 980 TIGRFAM PPR: pentatricopeptide repeat domain 375 407 IPR002885 -
Cla02g01845 980 TIGRFAM PPR: pentatricopeptide repeat domain 234 268 IPR002885 -
Cla02g01845 980 TIGRFAM PPR: pentatricopeptide repeat domain 528 560 IPR002885 -
Cla02g01845 980 TIGRFAM PPR: pentatricopeptide repeat domain 130 163 IPR002885 -
Cla02g01845 980 TIGRFAM PPR: pentatricopeptide repeat domain 444 470 IPR002885 -
Cla02g01845 980 TIGRFAM PPR: pentatricopeptide repeat domain 340 373 IPR002885 -
Cla02g01845 980 TIGRFAM PPR: pentatricopeptide repeat domain 409 442 IPR002885 -
Cla02g01845 980 TIGRFAM PPR: pentatricopeptide repeat domain 269 299 IPR002885 -
Cla02g01845 980 TIGRFAM PPR: pentatricopeptide repeat domain 306 338 IPR002885 -
Cla02g01845 980 TIGRFAM PPR: pentatricopeptide repeat domain 562 596 IPR002885 -
Cla02g01845 980 TIGRFAM PPR: pentatricopeptide repeat domain 199 233 IPR002885 -
Cla02g01845 980 SUPERFAMILY Lipocalins 732 821 IPR012674 -
Cla02g01845 980 Pfam PPR repeat family 236 280 IPR002885 -
Cla02g01845 980 Pfam PPR repeat family 336 385 IPR002885 -
Cla02g01845 980 Pfam PPR repeat family 161 210 IPR002885 -
Cla02g01845 980 Pfam PPR repeat family 413 455 IPR002885 -
Cla02g01845 980 Pfam PPR repeat family 524 572 IPR002885 -
Cla02g01845 980 Pfam PPR repeat 306 334 IPR002885 -
Cla02g01845 980 Pfam PPR repeat 496 522 IPR002885 -
Cla02g01845 980 Pfam PPR repeat 130 159 IPR002885 -
Cla02g01845 980 Pfam PPR repeat 668 693 IPR002885 -
Cla02g01845 980 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 127 161 IPR002885 -
Cla02g01845 980 Gene3D Tetratricopeptide repeat domain 400 472 IPR011990 GO:0005515
Cla02g01845 980 Gene3D Tetratricopeptide repeat domain 332 399 IPR011990 GO:0005515
Cla02g01845 980 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 197 231 IPR002885 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g01845 Cla-Chr2:33611790 Cla05g00814 Cla-Chr5:7953457 1.71E-21 dispersed
Cla02g01845 Cla-Chr2:33611790 Cla02g00278 Cla-Chr2:2741039 2.26E-11 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g01845 - - cmos:111451767 1221.84