Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g01848 ATGATACTACACTCACAAGCGTCCTCTGTTTTCACAATTTCCTCTACAGTTACCGATAATCACACGTATAAGTATCACCGGCGGCAACTTCAGCTTCCTGTTTACGGCGGTGGAGCGAGTTTTCATGTTCGTGTTTCTAAAATTTTACTTCCGACGGCTGCGGTCACGGCCGGTTCCAGCGGCGGAAGTCTGACTAGAAGGAAATATAGGAATCGTGTTAACGACTTTAGGTCTTCTGCAAGTGCCTCCAATTTGTCCTCCTCGACTCAGCCACCGGATATTCCAACTCCAGGTTCAGGTCCAGATAAGAATGAGGAAGCTCAGAGGCCCGGACCTGATCTGAAAATGCTTCTGAAGAGGTTTTGGAAAGTTGCCGCACCTTATTGGTCCTCGGACGATAAAGTGCAAGCTCGATGGCAGCTGGCTGCTGTCTTCGCTCTGTCCTTGGGCACCACCGGCATCAGCGTTGGCTTCAATTTCCTTGGCCGTGACTTCTACAACGCTCTTGCTAACAAGGACCAAGAACAGTTCACTAAGCAACTCCTCTACTACCTAGGTGCCTTCGCTGGAGGTATTCCGGTTTTTGTATTGAGAGATTATGCAAAGGACATGCTTTCCCTTAGATGGAGGTCATGGATGACTAAACATTACATGGAGCGTTATCTAAAGGACCAGTCTTTCTATAAAATTCAGTCCCAGTCCATTATTGATAATCCAGACCAGCGGATCGTTGATGATCTCAGTTCTTTCACAGGGACAGCTCTTTCATTTTCTTTGGCACTTTTCAATTCTACCGTGGATTTAATTTCATTTAGTAACATCTTATATGGTATCTATCCACCGTTGTTTGTTGTTCTTCTTTTATATTCGATTGGAGGAACGGCAATCAGTGTTTTCCTCGGAAAGGGTTTGGTTAATCTGAACTTCTTGCAAGAAAAGAAAGAAGCAGATTTTCGCTATGGACTTGTCCGCATTCGTGAAAATGCTGAATCAATTGCTTTCTATGGTGGTGAAGAAAATGAGATGCAGCTTATTCTGCAACGGTTTAGAAGTGCTGTTGAGAATTTAACTAAATTACTAATAGCATCCAGAAATCTTGAGTTCTTTACCAATGGCTATCGCTACCTCATTCAGATTCTTCCAGCTGCTGTTGTTGCCCCAATGTACTTTTCAGGAAAAATTGAGTTTGGTGTTATTAATCAATCAGTATCTGCTTTCAATCACATCCTTGGGGATTTTTCCCTCATTGTATATCAGTTTCAGGCCATCAGTGCTTTTTCAGCAATTATTGATCGCCTAGGTGAATTTGATGACCTCTTGGATGGCAGTGCCCCTAATGTTCTCTCTAACACCTCAGAAGAGATACATCTCATGTACTCCCATGTGGAAAGTTCACCTCTACTAGAATCAAATGGGTCCATGGCCCTAGACAAACGCCTGAAATTATTGGAGATAGAGAATATGACTTTAGAGGCACCAAATGGAGCTACTTTGGTGAGAGACTTGGCGTTAATAGTTAAAGAAAAGGAGCATTTACTGGTAATGGGACCCAGTGGATGTGGCAAGACCTCATTGTTAAGAGTTTTGGCAGGTCTTTGGAATGTTGGAAAAGGAAAAATCACGTTTTATATAAAAGACTATCCGGAGCAGTTAGTTTCTCAAAATGGATTGCAAACCGAAGCACATACAGGAGAAGATGTATCCAAAGAAAATAGTAGACCACTCAACAAGAATTATCGAGGGATATTTTTCCTTCCTCAAAGACCATATATGGTTCTGGGTACACTACGTCAGCAGCTGCTTTATCCTACATGGGCTGAAGGTTCTGTCACATCAGCAGGTCATGCTGAACCAAATGTATTCCCTTCCTTTTTGACAGGTGCGTCGAATATCAACAAGGTTGGCGAAAATCCTGATAAGCCAACAACGGATGACCTAATCAAGGTTCTGGATAAAGTGGGTCTTGACTACCTATTGACTCGTTTCAGTAGTCTGGACACGACTTGTGAATGGTCCAGTGTTCTTTCTCTCGGTGAGCAACAACGTATTGCTTTTGCACGTCTATTACTTTCAAGGCCAAAGTTAGTCCTGCTGGATGAGTCTACTAGTGCGTTAGACGAAGCGAATGAGGCACGTTTATACAAGCAAATCGCAGGTGCTGGAATTACATATATTAGCATTGGCCATCGACGAACTTTACGTAATCACCATAACAGTATTTTGCACATATCCAAGTTGTCTGATGGCAATCAACGCAATTGGAACATTGAACCCATTATTCGGGATGATTTGTACGAATTATTAAAGCAGTAA 2313 42.63 MILHSQASSVFTISSTVTDNHTYKYHRRQLQLPVYGGGASFHVRVSKILLPTAAVTAGSSGGSLTRRKYRNRVNDFRSSASASNLSSSTQPPDIPTPGSGPDKNEEAQRPGPDLKMLLKRFWKVAAPYWSSDDKVQARWQLAAVFALSLGTTGISVGFNFLGRDFYNALANKDQEQFTKQLLYYLGAFAGGIPVFVLRDYAKDMLSLRWRSWMTKHYMERYLKDQSFYKIQSQSIIDNPDQRIVDDLSSFTGTALSFSLALFNSTVDLISFSNILYGIYPPLFVVLLLYSIGGTAISVFLGKGLVNLNFLQEKKEADFRYGLVRIRENAESIAFYGGEENEMQLILQRFRSAVENLTKLLIASRNLEFFTNGYRYLIQILPAAVVAPMYFSGKIEFGVINQSVSAFNHILGDFSLIVYQFQAISAFSAIIDRLGEFDDLLDGSAPNVLSNTSEEIHLMYSHVESSPLLESNGSMALDKRLKLLEIENMTLEAPNGATLVRDLALIVKEKEHLLVMGPSGCGKTSLLRVLAGLWNVGKGKITFYIKDYPEQLVSQNGLQTEAHTGEDVSKENSRPLNKNYRGIFFLPQRPYMVLGTLRQQLLYPTWAEGSVTSAGHAEPNVFPSFLTGASNINKVGENPDKPTTDDLIKVLDKVGLDYLLTRFSSLDTTCEWSSVLSLGEQQRIAFARLLLSRPKLVLLDESTSALDEANEARLYKQIAGAGITYISIGHRRTLRNHHNSILHISKLSDGNQRNWNIEPIIRDDLYELLKQ 770
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
2 33629903 33637777 + ClCG02G018890.1 Cla02g01848 267974
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cla02g01848 770 SMART AAA_5 508 747 IPR003593 -
Cla02g01848 770 Pfam ABC transporter transmembrane region 2 133 390 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cla02g01848 770 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 483 768 IPR003439 GO:0005524
Cla02g01848 770 Pfam ABC transporter 500 703 IPR003439 GO:0005524
Cla02g01848 770 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 142 425 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cla02g01848 770 PANTHER ATP-BINDING CASSETTE SUB-FAMILY D MEMBER 3 103 759 - -
Cla02g01848 770 Gene3D ABC transporter type 1, transmembrane domain 102 439 IPR036640 GO:0005524|GO:0016021
Cla02g01848 770 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 482 744 IPR027417 -
Cla02g01848 770 ProSitePatterns ABC transporters family signature. 675 689 IPR017871 GO:0005524
Cla02g01848 770 SUPERFAMILY ABC transporter transmembrane region 119 436 IPR036640 GO:0005524|GO:0016021
Cla02g01848 770 Gene3D - 475 753 IPR027417 -
Cla02g01848 770 MobiDBLite consensus disorder prediction 80 110 - -
Cla02g01848 770 CDD ABCD_peroxisomal_ALDP 483 751 - -
Cla02g01848 770 PANTHER ATP-BINDING CASSETTE, SUB-FAMILY D MEMBER 103 759 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g01848 Cla-Chr2:33629903 Cla10g00838 Cla-Chr10:19234100 5.65E-46 dispersed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g01848 - - bhj:120087605 1425.22