Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g01856 ATGGGAGTTATCATTGCTATTGCAGTTGGTGGATTTTTCCTTCTATTTCTCATAGTCCTTTTTGTGGTTTTGTGCTGTTTAAAGAAAAAGGATGGTGGAGGCGCTGGCGCTAGAAAAGGGAAGGTTTCTGGTGGTGGGAGAAGTGAAAAACCAAAAGAGGAGTTTGGTAGTGGTGTGCAGGAGCCTGAGAAAAACAAGCTGGTATTTTTTGAAGGCTGTTCATTTAATTTTGATCTTGAAGATCTATTAAGGGCTTCAGCTGAAGTGCTTGGAAAGGGCAGCTATGGAACAGCTTATAAAGCTGTTCTCGAGGAACCTACCACTGTTGTGGTAAAAAGATTGAAGGAGGTGGTGGTGGGGAAGAGGGAATTTGAACAACAAATGGACATAGTGGGAAGGGTCGGGCAGCACCCAAATGTCATGCCACTCCGAGCATATTATTACTCAAAGGATGAAAAGCTCCTTGTTTATGATTATGTCCCTGGAGGCAGCTTGTCGTCACTCTTGCATGGAAACAGAGGAGGGGACAGAACTCCACTTGACTGGGACTCGAGAGTGAAAATTGCTCTTGCAACAGCAAAGGGAATTGCTCATATTCATGCAGTGGGTGGTCCAAAATTCACCCATGGAAATATCAAGGCCTCCAATGTCCTATTAATTCAAGATGTCAATGCTTGTGTCTCTGACTTTGGCCTTACCCCTCTTATGAATGTCCCAACTTCTCGAACTGCAGGTTATCGTGCGCCTGAGGTGATCGAAGCTCGCAAACATACACACAAGTCAGATGTTTACAGTTTTGGCGTTCTTCTTCTCGAAATGTTAACCGGAAAAGCTCCCCTCCAATCACCTGGACGTGACGAAATGGTCGATCTTCCTCGGTGGGTACAGTCGGTTGTGAGGGAGGAATGGACAGCTGAGGTTTTCGATGTTGAACTAATGAGATACCAGAATATTGAAGAAGAGATGGTGCAGATGTTACAAATAGCAATGACTTGTGTAGCTAAGTTGCCCGACATGAGACCAAACATGGACGAAGTAGTTAGAATGATTGAAGAAATCCGGCAATCTGACTCGGAGAACCGGCCATCTTCCGAAGAGAACAAATCGAAGGACTCAAATATGCACGATAATGCTTTCAAACATTACCCCCAGACCTTTGGCTTGTATGAGTTTATGCTAGATATTATGCTGAATTATATTCTCTGTCTTCACCACAGCTTCTCTTCTTCTTCCTCCAAAATTGTGAAACCCTTCTTCGTCGATCTATCTTCCAAGTCTGTACTCGAGGAATTAATGGCTTCAAAACGTATTCTTAAAGAGCTTAAGGATTTACAGAAAGATCCTCCTACGTCTTGCAGCGCTGGTCCTGTGGCTGAAGACATGTTTCATTGGCAAGCAACTATCATGGGTCCTGGTGACTCTCCATATTCAGGAGGTGTCTTCTTAGTTTCTATTCATTTCCCTCCGGACTATCCTTTCAAGCCCCCAAAGGTTGCTTTTAGGACTAAGGTGTTCCACCCAAACATTAATAGCAACGGAAGCATATGTCTGGACATTCTTAAAGAACAGTGGAGCCCTGCGCTAACTATTTCTAAGGTGCTGTTGTCCATATGCTCTCTGTTAACTGATCCCAACCCCGACGATCCTCTCGTTCCCGAAATTGCTCACATGTACAAGACTGATAGAGCCAAGTATGAATCTACTGCACGTAGCTGGACTCAAAAATCTAACATGGCTATGGAAGACATGGCTTCTTTGTCGGAGCACAAAATCAACTACCGCCGGAAACCGCTAACTTCCGGGGACTCTACAAAATTTAAGCAAAAGCTTGTTAGGATCATCGTCACCGACGCCGACGCCACTGATTCTTCTAGTGAAGATGAATTGATTTTGAGATCAAGAACGGCAATCAGGAGAGAAGTAAGAGAGATTACTATTAAACGTTACTCTGCTCTTGATGGTTCTTCAGCTAAATCCTCTGTTTCGGAGATTTGCAAGAAGCGGAACCCTAGATCACGAAGGTCTAGAAAATCATCTCGTCGGAAAAAGTTCAGAGGAGTCCGGCAGAGGCCGTGGGGCCGGTGGGCCGCGGAAATCCGAGATCCAATTCGCCGGAAGCGGATTTGGCTTGGAACCTTCGATACCGCGGAAGAGGCAGCGGCGGTTTACGACCGAGCTGCTGTGAAACTTCAGGGTCCAAACGCCACAACTAACTTCTCTGGCGACGGATCAGTTACAACGGTGGCCGACGGTGGTAGCAAGCAGGAAGACGGCTTAGAATCGCGGAAAACGACGGCGGCTTGGTCGCCGGCTTCAGTGCTTCATTACGACAGCGTATTAACTCCGATTGAGGAGATGCTGTATTGTGGAGAGATTGATGAGTTCGGATTCGCCATGGCGCCGTCGAGCTTACCGGCGGCGAGGAGGCAGTGCGGCGGCGAAGAAGATTTCGGGGAGATGGAGCTGGACTTGGACTATTTCTTGGTTGACGTCATTTACTAA 2502 46.4 MGVIIAIAVGGFFLLFLIVLFVVLCCLKKKDGGGAGARKGKVSGGGRSEKPKEEFGSGVQEPEKNKLVFFEGCSFNFDLEDLLRASAEVLGKGSYGTAYKAVLEEPTTVVVKRLKEVVVGKREFEQQMDIVGRVGQHPNVMPLRAYYYSKDEKLLVYDYVPGGSLSSLLHGNRGGDRTPLDWDSRVKIALATAKGIAHIHAVGGPKFTHGNIKASNVLLIQDVNACVSDFGLTPLMNVPTSRTAGYRAPEVIEARKHTHKSDVYSFGVLLLEMLTGKAPLQSPGRDEMVDLPRWVQSVVREEWTAEVFDVELMRYQNIEEEMVQMLQIAMTCVAKLPDMRPNMDEVVRMIEEIRQSDSENRPSSEENKSKDSNMHDNAFKHYPQTFGLYEFMLDIMLNYILCLHHSFSSSSSKIVKPFFVDLSSKSVLEELMASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPGDSPYSGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYESTARSWTQKSNMAMEDMASLSEHKINYRRKPLTSGDSTKFKQKLVRIIVTDADATDSSSEDELILRSRTAIRREVREITIKRYSALDGSSAKSSVSEICKKRNPRSRRSRKSSRRKKFRGVRQRPWGRWAAEIRDPIRRKRIWLGTFDTAEEAAAVYDRAAVKLQGPNATTNFSGDGSVTTVADGGSKQEDGLESRKTTAAWSPASVLHYDSVLTPIEEMLYCGEIDEFGFAMAPSSLPAARRQCGGEEDFGEMELDLDYFLVDVIY 833
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 33705634 33721380 - ClCG02G018970.2 Cla02g01856 267982
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g01856 833 SUPERFAMILY Protein kinase-like (PK-like) 88 360 IPR011009 -
Cla02g01856 833 CDD AP2 686 739 IPR001471 GO:0003700|GO:0006355
Cla02g01856 833 SUPERFAMILY UBC-like 431 579 IPR016135 -
Cla02g01856 833 MobiDBLite consensus disorder prediction 32 59 - -
Cla02g01856 833 Gene3D Phosphorylase Kinase; domain 1 52 159 - -
Cla02g01856 833 CDD STKc_IRAK 90 353 - -
Cla02g01856 833 MobiDBLite consensus disorder prediction 660 687 - -
Cla02g01856 833 Gene3D Ubiquitin Conjugating Enzyme 421 575 IPR016135 -
Cla02g01856 833 MobiDBLite consensus disorder prediction 741 762 - -
Cla02g01856 833 Pfam Protein kinase domain 87 348 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla02g01856 833 Pfam Ubiquitin-conjugating enzyme 436 572 IPR000608 -
Cla02g01856 833 MobiDBLite consensus disorder prediction 43 59 - -
Cla02g01856 833 Pfam AP2 domain 683 732 IPR001471 GO:0003700|GO:0006355
Cla02g01856 833 ProSiteProfiles AP2/ERF domain profile. 683 740 IPR001471 GO:0003700|GO:0006355
Cla02g01856 833 SUPERFAMILY DNA-binding domain 683 740 IPR016177 GO:0003677
Cla02g01856 833 Gene3D AP2/ERF domain 682 741 IPR036955 GO:0003700|GO:0006355
Cla02g01856 833 PANTHER OS05G0588300 PROTEIN 4 374 - -
Cla02g01856 833 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 505 520 IPR023313 -
Cla02g01856 833 SMART rav1_2 683 746 IPR001471 GO:0003700|GO:0006355
Cla02g01856 833 PRINTS Ethylene responsive element binding protein signature 684 695 IPR001471 GO:0003700|GO:0006355
Cla02g01856 833 PRINTS Ethylene responsive element binding protein signature 706 722 IPR001471 GO:0003700|GO:0006355
Cla02g01856 833 CDD UBCc 434 573 IPR000608 -
Cla02g01856 833 ProSiteProfiles Protein kinase domain profile. 84 378 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla02g01856 833 Gene3D Transferase(Phosphotransferase) domain 1 160 380 - -
Cla02g01856 833 ProSitePatterns Protein kinases ATP-binding region signature. 90 121 IPR017441 GO:0005524
Cla02g01856 833 MobiDBLite consensus disorder prediction 353 376 - -
Cla02g01856 833 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 432 578 IPR000608 -
Cla02g01856 833 MobiDBLite consensus disorder prediction 669 687 - -
Cla02g01856 833 PANTHER LRR RECEPTOR-LIKE KINASE 4 374 - -
Cla02g01856 833 SMART ubc_7 435 578 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00064 Cla-Chr1:542564 Cla02g01856 Cla-Chr2:33705634 4.22E-98 dispersed
Cla02g00431 Cla-Chr2:4214899 Cla02g01856 Cla-Chr2:33705634 2.23E-96 dispersed
Cla02g01856 Cla-Chr2:33705634 Cla04g00636 Cla-Chr4:20744678 2.32E-13 dispersed
Cla05g00122 Cla-Chr5:1178757 Cla02g01856 Cla-Chr2:33705634 1.41E-97 dispersed
Cla05g00941 Cla-Chr5:9344005 Cla02g01856 Cla-Chr2:33705634 7.18E-31 dispersed
Cla05g02464 Cla-Chr5:36093997 Cla02g01856 Cla-Chr2:33705634 6.15E-33 dispersed
Cla06g00755 Cla-Chr6:10045911 Cla02g01856 Cla-Chr2:33705634 6.13E-38 dispersed
Cla06g01771 Cla-Chr6:31179575 Cla02g01856 Cla-Chr2:33705634 5.71E-36 dispersed
Cla07g00544 Cla-Chr7:8786791 Cla02g01856 Cla-Chr2:33705634 4.44E-59 dispersed
Cla07g01357 Cla-Chr7:30714371 Cla02g01856 Cla-Chr2:33705634 3.59E-15 dispersed
Cla07g01408 Cla-Chr7:31275367 Cla02g01856 Cla-Chr2:33705634 5.97E-31 dispersed
Cla08g00396 Cla-Chr8:10606720 Cla02g01856 Cla-Chr2:33705634 1.20E-24 dispersed
Cla09g00979 Cla-Chr9:10285679 Cla02g01856 Cla-Chr2:33705634 1.23E-78 dispersed
Cla02g01856 Cla-Chr2:33705634 Cla01g00205 Cla-Chr1:2033852 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60706 PF00069 Pkinase 4.20E-36 CL0016 Cla TF
80367 PF00069 Pkinase 4.20E-36 CL0016 Cla PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g01856 - - csv:101221378 672.93