Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g01861 ATGCAAGATCCAGCGCCATCAAACCCTATCCACACTCCCAATTCCAATCAAATTCCTCCACTCAATGTTGCAGCACCGCCGCCGAAGACTCACAAACCGCCGCCGGTGGCGAATGCGACGGCCTCCTCTTCATCAATGTTTGCCAATGCGAATACTGGCAATACCTCATTTATGCCTAGAGTAGGCTCTCATCATCGGAGAGCTCATTCAGAAGTTAGTTTCCGGTTGCCGGAGGATATGATGGATATATCCGCGTCGGATCCGTTCAATGGCGGTTCGTCCACCGCAAGTCTGGAGGAGATCGGATCGGAAGATGATCTGTTTTCGACCTACATTGATGTGAAGAAGCTTGGAGGTAATGGAGGAGGGAATTTTGTAGATCATAATGGTAATGGAGGAAGTGAAGGTGCTGGTGGTAGTGAAGGGGAGAAGACTTCGAAGCCAAGGCATCGGCATAGTGTTTCGGTGGATGGAACGACGTCGTCGTCGAGTATGTTTGGGGAAATTATGGAAGCGAAGAAAGCTATGCCTCCTGATAAGTTGGCGGAGCTTTGGTCCAGTGATCCCAAACGCGCTAAAAGGATATTGGCAAATCGACAGTCTGCTGCTCGCTCAAAAGAGAGGAAGGCAAGATATATACAAGAATTGGAGCGCAAAGTGCAAACCCTTCAAACAGAAGCAACTACTCTATCAGCCCAATTGACTTTGTTCCAGCGAGACACAACGGGTCTCAGTACTGAAAATACAGAGCTTAAACTTCGGTTACAGGCTATGGAGCAACAAGCCCAATTGCGTGATGCTTTGAACGAAGCATTAAAGAAGGAAGTTGAGAGGCTTAAAATCGCTACTGGGGAAATGATGAGCCCATCTGAGTCTTTTAACTTAGGAATGCATCACATGGCGTACGCCCCGTCATCTTTCATTCAACTTTCACAGCAACAACCAGGATCTGTTGGCCTTCAAAATATGCAAATGCCACCATATAGCCATTCTCCATCCAATATGACTACTCACCCTCTGCTTCCATCAGAGTCTCATTCACTCTCTGAGGTTCTGCAGACCGACTCTCTTGGCCGATTGCAGGGTCTCGACATCAGTAGCAAAGGATCGTCGCTTGTGAAATCCGAGGGTCCTTCACTCTCTGCTAGTGAAAGCAGTACAACCTTTTGA 1170 47.86 MQDPAPSNPIHTPNSNQIPPLNVAAPPPKTHKPPPVANATASSSSMFANANTGNTSFMPRVGSHHRRAHSEVSFRLPEDMMDISASDPFNGGSSTASLEEIGSEDDLFSTYIDVKKLGGNGGGNFVDHNGNGGSEGAGGSEGEKTSKPRHRHSVSVDGTTSSSSMFGEIMEAKKAMPPDKLAELWSSDPKRAKRILANRQSAARSKERKARYIQELERKVQTLQTEATTLSAQLTLFQRDTTGLSTENTELKLRLQAMEQQAQLRDALNEALKKEVERLKIATGEMMSPSESFNLGMHHMAYAPSSFIQLSQQQPGSVGLQNMQMPPYSHSPSNMTTHPLLPSESHSLSEVLQTDSLGRLQGLDISSKGSSLVKSEGPSLSASESSTTF 389
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 33792180 33795500 + ClCG02G019030.1 Cla02g01861 267987
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g01861 389 SMART brlzneu 186 250 IPR004827 GO:0003700|GO:0006355
Cla02g01861 389 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 4 386 - -
Cla02g01861 389 PANTHER ATBZIP TRANSCRIPTION FACTOR 4 386 - -
Cla02g01861 389 MobiDBLite consensus disorder prediction 20 34 - -
Cla02g01861 389 Coils Coil 206 233 - -
Cla02g01861 389 Coils Coil 254 285 - -
Cla02g01861 389 MobiDBLite consensus disorder prediction 1 19 - -
Cla02g01861 389 Pfam bZIP transcription factor 190 238 IPR004827 GO:0003700|GO:0006355
Cla02g01861 389 Gene3D - 189 242 - -
Cla02g01861 389 MobiDBLite consensus disorder prediction 1 63 - -
Cla02g01861 389 CDD bZIP_plant_RF2 191 240 IPR044759 GO:0003700|GO:0006355
Cla02g01861 389 MobiDBLite consensus disorder prediction 317 349 - -
Cla02g01861 389 MobiDBLite consensus disorder prediction 366 389 - -
Cla02g01861 389 MobiDBLite consensus disorder prediction 36 59 - -
Cla02g01861 389 MobiDBLite consensus disorder prediction 123 165 - -
Cla02g01861 389 SUPERFAMILY Leucine zipper domain 190 241 IPR046347 GO:0003700|GO:0006355
Cla02g01861 389 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 188 251 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g00474 Cla-Chr2:4601216 Cla02g01861 Cla-Chr2:33792180 5.74E-52 dispersed
Cla02g00475 Cla-Chr2:4615232 Cla02g01861 Cla-Chr2:33792180 1.54E-50 dispersed
Cla02g01861 Cla-Chr2:33792180 Cla07g00481 Cla-Chr7:6801918 8.03E-36 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60707 PF00170 bZIP_1 1.30E-08 CL0018 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g01861 - - csv:101205663 657.136