Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g01873 ATGGCATCCCTTGGCCCTCTTTTGCTATGTTTTATTGTTTTATCAGCTGCCCTAAGCCATAGCCATGCACAGCTAACTCCAAACTTTTACAATAAAGTCTGTCCTAAGGCTTTGTCCACCATCAAATCCGTGGTCAAGAACGCCATTAGACGTGAGCCTCGAATGGGAGCTTCCCTCTTACGTCTCCATTTCCATGATTGCTTTGTCAATGGGTGTGACGGATCCGTATTGTTGGATGATACTGCTACTTTTATGGGAGAAAAGACTGCATTTCCTAATGTTAACTCGATTAGAGGATTTGAAGTTGTTGACAAGATTAAGACACAAGTGAATAAAGTTTGCAAAGGAAATGTCGTGTCTTGTGCTGATATTTTAGCAGTTGCAGCTCGTGACTCCGTTGCTATTCTTGGAGGACCAAACTACAAAGTATTAGTAGGAAGAAGAGACGCAAGAAGAGCGAGTGCAGAAGATGCCAATAGAAATCTCCCTCCGCCATTTTTCAGCTTCACACAACTTCTATCCAACTTCCAATCTCATGGCCTAAACCTTAAGGACCTCGTCGTCTTGTCAGCCGGCCACACTCTCGGGTATGCTCGGTGCACCAATTTTCGAACTAGGATATACAACGACACCAACATCAACCCGAAATTCGCAGGGGTATTGAAGGGAAAGTGCCCACAGAGTGGGGGCGATGACAATCTGAAGGGGCTTGACATGACTCCAAATTTCTTTGACAATGCTTACTTCAAGGCTTTGTTGACAAACAATGGCCTTCTACATTCTGACCAGGAACTGTTCGGTGGCGGCAACAACGACAGCGATGGTTTGGTGAAGTATTATAGCAGATATCCAATTGCCTTTAGAAATGATTTTGGTTCTTCCATGATCAAAATGGGGAATATGAACCCACTTACAGGAACTGCCCTAAGCCATAGCCATGCACAGCTGACTCCAAACTTTTACAACAATGTCTGCCCCATGGCCTTGCCCACCATCAAATCCGTCGTCTCGAGCGCCATCAAACGTGAGCCTCGAATGGGAGCTTCCCTCTTACGTCTCCATTTCCATGATTGTTTTGTCAATGGGTGTGACGGATCCGTGTTGTTGGATGATACTGCTATTTTCACGGGAGAAAAGACTGCATTTCCTAATGTTAACTCGATTAGAGGATTTGAAGTTGTTGACAAGATTAAGACACAAGTGAATAAAGTTTGCAAAGGAAATGTCGTGTCTTGTGCTGACATTTTAGCAGTTGCTGCTCGTGACTCCGTTGCTATTCTCGGAGGGCCAAACTACAAAGTATTAGTAGGAAGAAGAGACGCAAAAAGCGCGAGTGCAGACGATGCCAATGGAAATCTCCCTCCACCATTTTTCAACTTCACACAACTTCTATCCAACTTCCAATCTCATGGCCTCAACCTCAAGGACCTCGTCGTCTTGTCAGCCGGCCACACTCTCGGGTACTCCCGATGCACCAATTTTCGAACCAGGATATATAACGACACCAACATTGACCCGAAATTTGCAGCAGCATTACAAGGCAACTGCCCACAGAGCGGGGGCGATGACAATCTGAGGAGCCTTGATATGACTCCAAATTTCTTTGACAATGCTTACTTCAAGGCTTTGTTGACAAACAAGGGCCTTTTACATTCCGACCAGGAACTGTTCGGTGGCGGCAACAGCGACAGCGATGGTTTGGTGAAGTATTATAGCAGATATCCAATTGCCTTTAGAAATGATTTTGGTTCTTCCATGATCAAAATGGGGAATATGAACCCACTTACAGGAAGTAATGGAGAAATCAGAGCCAATTGCAGGCTTTTTTTGTAA 1833 44.84 MASLGPLLLCFIVLSAALSHSHAQLTPNFYNKVCPKALSTIKSVVKNAIRREPRMGASLLRLHFHDCFVNGCDGSVLLDDTATFMGEKTAFPNVNSIRGFEVVDKIKTQVNKVCKGNVVSCADILAVAARDSVAILGGPNYKVLVGRRDARRASAEDANRNLPPPFFSFTQLLSNFQSHGLNLKDLVVLSAGHTLGYARCTNFRTRIYNDTNINPKFAGVLKGKCPQSGGDDNLKGLDMTPNFFDNAYFKALLTNNGLLHSDQELFGGGNNDSDGLVKYYSRYPIAFRNDFGSSMIKMGNMNPLTGTALSHSHAQLTPNFYNNVCPMALPTIKSVVSSAIKREPRMGASLLRLHFHDCFVNGCDGSVLLDDTAIFTGEKTAFPNVNSIRGFEVVDKIKTQVNKVCKGNVVSCADILAVAARDSVAILGGPNYKVLVGRRDAKSASADDANGNLPPPFFNFTQLLSNFQSHGLNLKDLVVLSAGHTLGYSRCTNFRTRIYNDTNIDPKFAAALQGNCPQSGGDDNLRSLDMTPNFFDNAYFKALLTNKGLLHSDQELFGGGNSDSDGLVKYYSRYPIAFRNDFGSSMIKMGNMNPLTGSNGEIRANCRLFL 610
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 33903015 33915093 + ClCG02G019180.1 Cla02g01873 267999
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g01873 610 Pfam Peroxidase 333 572 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cla02g01873 610 Pfam Peroxidase 42 281 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cla02g01873 610 PRINTS Plant peroxidase signature 409 419 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cla02g01873 610 PRINTS Plant peroxidase signature 584 597 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cla02g01873 610 PRINTS Plant peroxidase signature 526 541 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cla02g01873 610 PRINTS Plant peroxidase signature 428 443 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cla02g01873 610 PRINTS Plant peroxidase signature 389 402 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cla02g01873 610 PRINTS Plant peroxidase signature 349 369 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cla02g01873 610 PRINTS Plant peroxidase signature 475 487 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cla02g01873 610 PRINTS Plant peroxidase signature 542 559 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cla02g01873 610 PRINTS Plant peroxidase signature 325 344 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cla02g01873 610 CDD secretory_peroxidase 24 308 IPR033905 GO:0004601|GO:0042744
Cla02g01873 610 Gene3D - 28 307 - -
Cla02g01873 610 ProSitePatterns Peroxidases proximal heme-ligand signature. 476 486 IPR019793 -
Cla02g01873 610 SUPERFAMILY Heme-dependent peroxidases 24 307 IPR010255 GO:0004601|GO:0006979|GO:0020037
Cla02g01873 610 PRINTS Haem peroxidase superfamily signature 185 200 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cla02g01873 610 PRINTS Haem peroxidase superfamily signature 237 252 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cla02g01873 610 PRINTS Haem peroxidase superfamily signature 119 136 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cla02g01873 610 PRINTS Haem peroxidase superfamily signature 56 70 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cla02g01873 610 PRINTS Haem peroxidase superfamily signature 137 149 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cla02g01873 610 ProSiteProfiles Plant heme peroxidase family profile. 24 322 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cla02g01873 610 PANTHER CATIONIC PEROXIDASE 11 307 - -
Cla02g01873 610 PANTHER CATIONIC PEROXIDASE 309 607 - -
Cla02g01873 610 Gene3D Peroxidase, domain 2 454 589 - -
Cla02g01873 610 Gene3D Peroxidase, domain 2 163 298 - -
Cla02g01873 610 CDD secretory_peroxidase 315 609 IPR033905 GO:0004601|GO:0042744
Cla02g01873 610 Gene3D - 319 607 - -
Cla02g01873 610 ProSitePatterns Peroxidases proximal heme-ligand signature. 185 195 IPR019793 -
Cla02g01873 610 ProSitePatterns Peroxidases active site signature. 56 67 IPR019794 GO:0004601
Cla02g01873 610 ProSitePatterns Peroxidases active site signature. 347 358 IPR019794 GO:0004601
Cla02g01873 610 ProSiteProfiles Plant heme peroxidase family profile. 315 610 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cla02g01873 610 SUPERFAMILY Heme-dependent peroxidases 315 608 IPR010255 GO:0004601|GO:0006979|GO:0020037
Cla02g01873 610 PANTHER PEROXIDASE 72-RELATED 11 307 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cla02g01873 610 PANTHER PEROXIDASE 72-RELATED 309 607 IPR000823 GO:0004601|GO:0006979|GO:0020037
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g01873 Cla-Chr2:33903015 Cla09g00439 Cla-Chr9:4162682 1.43E-126 dispersed
Cla02g01871 Cla-Chr2:33876633 Cla02g01873 Cla-Chr2:33903015 1.42E-13 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g01873 K00430 - csv:101204979 540.421