Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g01883 ATGGCTACCGAGGCGACCGAAGCCACGACCAAGTTCCAGAGTCCGGATTTTCGTCCGGTACCGTCGCCTCCAGATTTCCATCCCGAGATTATGGTCTCAGCTCATGATGGTCTTCGGTTCTGGCAGTTCATGATTGCCGGTTCAATCGCAGGGTCTGTTGAGCATATGGGTATGTTTCCGGTTGATACTGTCAAGACCCATATGCAAGCACTTGGTTCATGTCCAATTAAATCTGTTGGAGTTCGACAAGCCCTTAGGTCAATTTTGAAATCAGAGGGACCGGCTGGGTTTTATCGTGGTATTGGTGCCATGGGTCTTGGAGCTGGACCTGCACATGCCGTATATTTTACTGTCTACGAGAATTGTAAGAAGTTTTTCTCCGGTGGGGATCCTAATAATTCTATTGCTCACGCTGCTTCTGGCGTCTGTGCAACGGTGGCGAGTGACGCTGTGTTTACACCGATGGATATGGTTAAACAGAGGCTGCAGCTGAGTAATAATTCCTACAAGGGAGTTTTGGATTGTATCAAAAGGGTCCTTAGAGAGGAGGGTGTTAAAGCATTTTACGCATCATATAGAACTACAGTGTTGATGAATGCTCCATTTACTGCTGTGCATTTTGCTACTTATGAAGCTGCAAAGAGAGGTTTGATGGAGGTTTCGCCAGAGAGTGTAAATGATGAACAGTGGATTGTTCATGCGACGGCAGGAGCTGCTGCTGGAGCCTCAGCTGCACTTGTTACAACGCCGCTTGATGTGGTTAAGACTCAATTACAATGTCAGGGTGTATGTGGATGCGATAGATTCAAAAGCGGGTCAATCAGGGACGTAATTCGGACAATACTCAAGAAGGATGGATATAGAGGGCTTATGAGAGGGTGGGTTCCAAGGATGCTCTTTCATGCTCCGGCTGCAGCTATATGCTGGTCGACATATGAAGCGTTAAAGTCTTTCTTCCACGAGCTCAATGGCAGTGGCAGCGACAACTTGACATGA 996 47.39 MATEATEATTKFQSPDFRPVPSPPDFHPEIMVSAHDGLRFWQFMIAGSIAGSVEHMGMFPVDTVKTHMQALGSCPIKSVGVRQALRSILKSEGPAGFYRGIGAMGLGAGPAHAVYFTVYENCKKFFSGGDPNNSIAHAASGVCATVASDAVFTPMDMVKQRLQLSNNSYKGVLDCIKRVLREEGVKAFYASYRTTVLMNAPFTAVHFATYEAAKRGLMEVSPESVNDEQWIVHATAGAAAGASAALVTTPLDVVKTQLQCQGVCGCDRFKSGSIRDVIRTILKKDGYRGLMRGWVPRMLFHAPAAAICWSTYEALKSFFHELNGSGSDNLT 331
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 34027113 34031010 - ClCG02G019290.1 Cla02g01883 268009
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g01883 331 PRINTS Mitochondrial carrier protein signature 43 56 IPR002067 GO:0055085
Cla02g01883 331 PRINTS Mitochondrial carrier protein signature 56 70 IPR002067 GO:0055085
Cla02g01883 331 PRINTS Mitochondrial carrier protein signature 147 165 IPR002067 GO:0055085
Cla02g01883 331 PRINTS Mitochondrial carrier protein signature 189 207 IPR002067 GO:0055085
Cla02g01883 331 PRINTS Mitochondrial carrier protein signature 237 259 IPR002067 GO:0055085
Cla02g01883 331 ProSiteProfiles Solute carrier (Solcar) repeat profile. 228 318 IPR018108 -
Cla02g01883 331 PANTHER MITOCHONDRIAL CARRIER PROTEIN, EXPRESSED 5 325 - -
Cla02g01883 331 Pfam Mitochondrial carrier protein 133 219 IPR018108 -
Cla02g01883 331 Pfam Mitochondrial carrier protein 38 127 IPR018108 -
Cla02g01883 331 Pfam Mitochondrial carrier protein 229 320 IPR018108 -
Cla02g01883 331 Gene3D Mitochondrial carrier domain 167 331 IPR023395 -
Cla02g01883 331 PANTHER MITOFERRIN-1-RELATED 5 325 - -
Cla02g01883 331 Gene3D Mitochondrial carrier domain 24 166 IPR023395 -
Cla02g01883 331 ProSiteProfiles Solute carrier (Solcar) repeat profile. 38 125 IPR018108 -
Cla02g01883 331 SUPERFAMILY Mitochondrial carrier 36 314 IPR023395 -
Cla02g01883 331 ProSiteProfiles Solute carrier (Solcar) repeat profile. 132 216 IPR018108 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g01883 Cla-Chr2:34027113 Cla04g00684 Cla-Chr4:21617124 9.60E-151 dispersed
Cla05g02192 Cla-Chr5:33550162 Cla02g01883 Cla-Chr2:34027113 9.42E-08 dispersed
Cla02g01883 Cla-Chr2:34027113 Cla08g00747 Cla-Chr8:19756856 2.73E-06 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g01883 K15113 - csv:101215924 637.876