Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g01885 ATGGGAGCCGGTTCATCTCCTTGCGCCTCTTGCAAATTGCTACGGCGGCGCTGCGCAAAAGACTGCATTTTTGCACCTTATTTCCCTTCCGATGACCCTTTCAAATTCGCCATTGTTCATAAGATCTTCGGCGCCAGCAATGTCAGCAAAATGTTGCAGGAAGTTCCAATAGAACAGAGAGCAGATGCAGTGAGCAGTATGGTATATGAAGCGAGTGCAAGAATGCGGGATCCAGTGTATGGTTGTGTAGGGACAATCTCGTTTCTACAAAATGAAGTGTCCCGATTGGAAATGCAACTCGGAGCAGCACAAGCAGAAATTTTGACTTTGCATATGCAGCAACAAGCAACTCCAACAACATTTCCGACGACGACGACCCACACAGATCAAGATGATCAAAATCTTGTTATTTTCTCAAATGCTGATTCTTCTAATTCCTTCCATATTTTCCAGGAAGAGGGGGACTATTACCCTCTATGGACTTGA 486 45.06 MGAGSSPCASCKLLRRRCAKDCIFAPYFPSDDPFKFAIVHKIFGASNVSKMLQEVPIEQRADAVSSMVYEASARMRDPVYGCVGTISFLQNEVSRLEMQLGAAQAEILTLHMQQQATPTTFPTTTTHTDQDDQNLVIFSNADSSNSFHIFQEEGDYYPLWT 161
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 34042827 34043588 + ClCG02G019310.1 Cla02g01885 268011
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g01885 161 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 1 133 - -
Cla02g01885 161 Coils Coil 86 106 - -
Cla02g01885 161 ProSiteProfiles LOB domain profile. 6 107 IPR004883 -
Cla02g01885 161 Pfam Lateral organ boundaries (LOB) domain 7 104 IPR004883 -
Cla02g01885 161 PANTHER LOB DOMAIN-CONTAINING PROTEIN 12-LIKE 1 133 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g01885 Cla-Chr2:34042827 Cla09g02200 Cla-Chr9:39611639 1.06E-56 dispersed
Cla02g01885 Cla-Chr2:34042827 Cla07g00427 Cla-Chr7:5704730 4.49E-67 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60710 PF03195 LOB 4.50E-40 No_clan Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g01885 - - csv:101207667 258.455