Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g01906 ATGATGTGCAATGGTTGCAATAGGAAATCTGCAAGCCCTAACTTCGTCATGGACGACAGATTTAGACGAGGGGGATTGGGATTTTGTATCTCTGTTTTGCTTGAATTTTCAGCTACAGATGATCTGATTGGATTTAGGAGTGCTGTTGAGGAAGGTGGTTATAATATTGATGAGGCAAGCTTGTGGTATGGGAGGATTTTCGGTTCAAAAAAGATGGGGTATGAAGAAAGGACTCCTCTTATGGTTGCAGCCATGTTTGGGAGTATGAATGTTCTGTCTTATATCCTTCACAGTGGTCGTGTTGATGTTAATCGAGCTTGTGGTTCAGATGGCGCAACGACTCTCCATTGTGCTGTTGCTGGTGGTTCTGCTGTTGCGGATCAGGTTGTCAAACTCTTGATTGATGCTTCCGCTGATGTGAGTGCTGTTGATGCAAACGGTAACCGGCCTGGTGATTTGATTGCTCCTGATTTTACTTCAGCCTCCTATTCAAGGAAAAAAGTGTTACAACAATTACTAAATGATCGTGAAGAAGCCCTTGGTTCATCCGAGTCAATATTTTACGAGAGAGAAACACAGGAGCCATTGGAGCTATCACCACCTCGGGCTTCAAGAGATGGGACAGAGAAGAAAGAGTATCCGGTTGATCTCTCACTTCCAGACATCAAGAACGGAATCTATAGCACAGATGAGTTTAGAATGTATACTTTTAAGATCAAACCTTGTACAAGAGCTTACTCTCATGATTGGACAGAGTGTCCATTTGTTCACCCTGGGGAAAATGCAAGGAGGCGGGATCCTAGGAAATACCATTACAGCTGCGTGCCATGTCCAGAATTCAGAAAAGGAACATGTAGGCAGGGGGATGCCTGTGAATATGCTCATGGAATTTTTGAATGTTGGCTCCATCCTGCTCAATATCGTACCCGTCTTTGCAAAGATGAAACTGGATGCACCCGAAAAGTCTGTTTCTTTGCTCACAAGCCGGAAGAACTCCGCCCCTTGTATGCTTCAACTGGTTCTGCTGTACTGTCTCCAAGATCAATCTGTGGTTCTTCACTCGACATTGCGTCGATCAGCCCACTTACCCTTGGTTCTCCTTCAGCTCTGATACCTCCTTCATCAACTCCACCTTTAACCCCTTCTGGAGTTTCCTCTCCAATGAGTGGAACCATGTGGCAGACTCAATGTAATATGGCGCCCCCGACCTTGCAGCTTCCAGGTAGCAGGCTAAAGGCTTCTTTGAGCGCAAGAGACATAGATATAGATGTTGAGTTACTCGGTCTCGAAAGTCAGCGCCGTAGACAACAACAGCTAATGGATGAGATGTCTTGTCTACCTTCCCCTACCAGATGGAACAATGGCTTGCCAACCCCTCCATCTTTTCCATCCCCGAGGAGTAGAAATGGAGAACTTAATGGACTTGGAGGCATGAACCCTAATAACCTCGAGGACCTTTTCGGGTCTGTAGATCCTGCGATTTTGCCTCAATTACAAGGACTTTCATTGGATTCTGTGGGATCTCAGGTACAATCCCCTTCTGGGATTCAGATGCGCCAAAGCTTGAATCAGTCTTTCCTCTCGAGCTATGCTAACAGCATTGGATCTCCTCCTGCAAGATCATCTCAACCATCCGTGTCTACTGCAGCTAGCGTTCTGAGTTCTAGGGCTGCTGCTTTCGCCAAGCGTAGCCAGAGCTTTATCGAGCGTAGCGTAGTGAACCGTCATTCTGGACTTTCACCCCCAGCTACATCCACAACTGCCATGCCTTCGAGCCTGTCTGATTGGGGTTCGCCGGATGGAAAACTAGACTGGGGAATTCGTGGAGAAGAACTCAACAAGTTAAGGAAGTCTGCATCATTTGGGTTCCGAAACAGTTGCACCAGCACTCTTGCCACGTCCACAATGCACGCTGCCACTCTCGAGCCAGACGTGTCGTGGGTTCAGTCCCTGGTGAAGGATGGTCCATCCGAAAATGCTGTGCAGCTGAGTATGGACGAGCAGCAGCAACAGCAGCTTTGTCATCTCGACAATGGCGATTCAAAGCGAAGGTACATGGAACAGGAGCAGTTAGTTGCTTGA 2082 47.26 MMCNGCNRKSASPNFVMDDRFRRGGLGFCISVLLEFSATDDLIGFRSAVEEGGYNIDEASLWYGRIFGSKKMGYEERTPLMVAAMFGSMNVLSYILHSGRVDVNRACGSDGATTLHCAVAGGSAVADQVVKLLIDASADVSAVDANGNRPGDLIAPDFTSASYSRKKVLQQLLNDREEALGSSESIFYERETQEPLELSPPRASRDGTEKKEYPVDLSLPDIKNGIYSTDEFRMYTFKIKPCTRAYSHDWTECPFVHPGENARRRDPRKYHYSCVPCPEFRKGTCRQGDACEYAHGIFECWLHPAQYRTRLCKDETGCTRKVCFFAHKPEELRPLYASTGSAVLSPRSICGSSLDIASISPLTLGSPSALIPPSSTPPLTPSGVSSPMSGTMWQTQCNMAPPTLQLPGSRLKASLSARDIDIDVELLGLESQRRRQQQLMDEMSCLPSPTRWNNGLPTPPSFPSPRSRNGELNGLGGMNPNNLEDLFGSVDPAILPQLQGLSLDSVGSQVQSPSGIQMRQSLNQSFLSSYANSIGSPPARSSQPSVSTAASVLSSRAAAFAKRSQSFIERSVVNRHSGLSPPATSTTAMPSSLSDWGSPDGKLDWGIRGEELNKLRKSASFGFRNSCTSTLATSTMHAATLEPDVSWVQSLVKDGPSENAVQLSMDEQQQQQLCHLDNGDSKRRYMEQEQLVA 693
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 34204310 34206391 - ClCG02G019515.1 Cla02g01906 268032
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g01906 693 SMART ANK_2a 75 105 IPR002110 GO:0005515
Cla02g01906 693 SMART ANK_2a 110 142 IPR002110 GO:0005515
Cla02g01906 693 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 66 29 691 - -
Cla02g01906 693 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 276 296 IPR000571 GO:0046872
Cla02g01906 693 Gene3D - 51 177 IPR036770 -
Cla02g01906 693 Gene3D - 272 334 - -
Cla02g01906 693 Pfam Ankyrin repeats (3 copies) 73 143 IPR002110 GO:0005515
Cla02g01906 693 ProSiteProfiles Ankyrin repeat region circular profile. 110 144 - -
Cla02g01906 693 MobiDBLite consensus disorder prediction 576 594 - -
Cla02g01906 693 MobiDBLite consensus disorder prediction 191 212 - -
Cla02g01906 693 ProSiteProfiles Zinc finger C3H1-type profile. 276 298 IPR000571 GO:0046872
Cla02g01906 693 PANTHER UNKEMPT FAMILY MEMBER 29 691 IPR045234 -
Cla02g01906 693 SUPERFAMILY Ankyrin repeat 72 150 IPR036770 -
Cla02g01906 693 MobiDBLite consensus disorder prediction 576 598 - -
Cla02g01906 693 ProSiteProfiles Ankyrin repeat profile. 110 145 IPR002110 GO:0005515
Cla02g01906 693 SMART c3hfinal6 271 297 IPR000571 GO:0046872
Cla02g01906 693 SMART c3hfinal6 306 329 IPR000571 GO:0046872
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g01906 Cla-Chr2:34204310 Cla03g01526 Cla-Chr3:30903917 1.97E-56 dispersed
Cla10g01174 Cla-Chr10:26344622 Cla02g01906 Cla-Chr2:34204310 6.65E-159 transposed
Cla10g01629 Cla-Chr10:31945774 Cla02g01906 Cla-Chr2:34204310 9.69E-160 transposed
Cla02g01906 Cla-Chr2:34204310 Cla07g00403 Cla-Chr7:5224660 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60714 PF12796 Ank_2 2.00E-06 CL0465 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g01906 - - csv:101213761 1229.16