Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g01918 ATGCCAGCCATTACTCGAGCAAATCACTGTAAGATCGAGAGTGGAACGAATTTTAACGATGTTACGGTTGCAAGGATGACTGATGGAGGTTCTGTAATGGAAACCACTCCTCCGAAGCGGAAACTGAGATCCAGTGACGTGCAGAGGCAACAAAGCCCTAACTCTGCGCCGGTGAGTTGGAAATCGCCTCGTCGGCGCCTTAATTCGAGTCCAAAATGCCCTCCACAGAGCGATGGGAAAACGTTTAACGATGGCTTTTCTAACTTACATAGTTCCCCGATAAGATGCTTGTTGAAGGACCTTATTGTCAAACCAGATTGGAATCCTAAGGATACTGAACATATAAAAACAGCAAAGGAAGCATTGCATGTATCGACAGCTCCAACTACAATCATGTGCCGTGAAGATGAACAAAGTAAAATCTTCAATTTCTGCAAGGCTTGTGTGGAGCAAGAAAAAGCTGGTAGTTTGTATGTTTGCGGGTGTCCAGGAACTGGCAAATCCTTGTCCATGGAAAAAGTGAAAGAGCAGTTGGCTGCTTGGGTGAAAGAGTCAGGTCTTCAGCTTCCAGACATCTTGTCCATAAACTGCACTTCCTTAGCTAACACATCCGATATTTTCATTAAGATGATGGGTGAAGCCCAACCACAAAAGAAAAGGAATGGCTCTTTAACACCCTTGCAACATCTTCAACGCTTGTACTCCCAAAAGGCAGAGTCATCTTGCATGAAGATGATGTTGATAATAGCTGATGAATTGGATTATTTAATTACAAAGGATAAAGCAGTGCTACATGATCTGTTCATGCTCACAACTTTCCCATTTTCAAGATGTATTTTGATAGGAATTGCAAATGCTATTGACTTAGCAGATCGCTTTCTTCCAAGACTTCAGGCTTTGAATTGCAAACCTCAGGTCGTAACTTATAGGGCATATTCCAAGGAACAGATCCTCAAGATTCTTCAACAAAGGTTAATTGTGCTTCCTTTCATTGTCTTTCAGTCGCAAGCACTGGAGCTTTGTGCTAGAAAAGTTGCAGCTGTCTCTGGAGATATGAGAAAAGCTCTCTGTGTTTGCAGGAATGCCATTGAATTGTTGGAGGTGGAACTCAAAGCATCCTCTAAGGAGCTGAACCATAATGACGCATGTGATGCTTCAGCACCACCTGAGCTTGTCAAAAGACGAGAGTCTCAGATTGTGAGGTTGGACCATATGGCTGTTGCCTTATCCAAGACTTTTAAATCACCAGCAGTAGAAACCATACAATCTCTTCCTCAGCATCAACAGATAATTTTATGCTCTGTTGTGAAACTTGTTCGTGGAGGAAAGAAGGATACAACTATAGGAGAGCTAAACAAATCATACGTAGAGATATGTAAATCAACACTAATCCCACCGGTGGGGAGTTTGGAACTTACAAATATGTTCACAGTGCTAAACGACCAGGGGCTTCTCAAACTTGGGCAATCTCGAGATGATAAGATGAGGCGAGTGTTGTTGAAAGTTGATGAAGCTGATGTCATGTTCGCATTACAGGGAATACGCTTCTTTCGAAATTGCCTACAGTACTATTCTTTACATGGCCATGTCGGGACTATGGCAAGGAGAATTCAACAGGGAGCTAATTCAGTTCAAGGGGTTGAAGCCACTCTGTGGCAGGTGCCTGAGACATTGTCTGATGTGATACTGAAAAAGATCAAAGCTCCTCCAAAAGCAGATGATGTGCAAGAGATCAGGCCAGAACAACTGCTGGAAGCAGATGGTTTTCTCTTCGGGTTTCCATCGCGATTCGGGGTTATGGCTGCTCAATTCAAGGCATTCTTTGATGCAACAAGTGAGATATGGGAGTCTCAAGCACTTGCTGGTAAACCTGCTGGCATTTTCTGGAGTACTGGTTTTCATGGTGGAGGTCAGGAGCTTACTGCATTGACGGCAATAACGCAGCTAGCACATCACGGAATGATATTTGTACCTCTTGGTTACACATTCGGGAGTAAGATGATGGAGATGGATGAGGTGAAAGGTGGCTCTCCTTATGGCGCTGGAACTTTTGCAGCCGATGGAACTCGACACCCGACAGAGCTGGAGCTTGAACAGGCCTTTTACCAAGGTAAGTACGTTGCTGAATTAACCAAGAAGCTCAAAAACTAA 2151 43.75 MPAITRANHCKIESGTNFNDVTVARMTDGGSVMETTPPKRKLRSSDVQRQQSPNSAPVSWKSPRRRLNSSPKCPPQSDGKTFNDGFSNLHSSPIRCLLKDLIVKPDWNPKDTEHIKTAKEALHVSTAPTTIMCREDEQSKIFNFCKACVEQEKAGSLYVCGCPGTGKSLSMEKVKEQLAAWVKESGLQLPDILSINCTSLANTSDIFIKMMGEAQPQKKRNGSLTPLQHLQRLYSQKAESSCMKMMLIIADELDYLITKDKAVLHDLFMLTTFPFSRCILIGIANAIDLADRFLPRLQALNCKPQVVTYRAYSKEQILKILQQRLIVLPFIVFQSQALELCARKVAAVSGDMRKALCVCRNAIELLEVELKASSKELNHNDACDASAPPELVKRRESQIVRLDHMAVALSKTFKSPAVETIQSLPQHQQIILCSVVKLVRGGKKDTTIGELNKSYVEICKSTLIPPVGSLELTNMFTVLNDQGLLKLGQSRDDKMRRVLLKVDEADVMFALQGIRFFRNCLQYYSLHGHVGTMARRIQQGANSVQGVEATLWQVPETLSDVILKKIKAPPKADDVQEIRPEQLLEADGFLFGFPSRFGVMAAQFKAFFDATSEIWESQALAGKPAGIFWSTGFHGGGQELTALTAITQLAHHGMIFVPLGYTFGSKMMEMDEVKGGSPYGAGTFAADGTRHPTELELEQAFYQGKYVAELTKKLKN 716
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 34320146 34330958 - ClCG02G019640.1 Cla02g01918 268044

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g01918 716 Gene3D - 111 301 IPR027417 -
Cla02g01918 716 SUPERFAMILY Flavoproteins 523 715 IPR029039 -
Cla02g01918 716 Gene3D - 422 511 IPR036388 -
Cla02g01918 716 Pfam NADPH-dependent FMN reductase 531 660 IPR005025 GO:0016491
Cla02g01918 716 SMART AAA_5 153 303 IPR003593 -
Cla02g01918 716 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 119 369 IPR027417 -
Cla02g01918 716 CDD AAA 149 297 - -
Cla02g01918 716 SUPERFAMILY Winged helix DNA-binding domain 418 520 IPR036390 -
Cla02g01918 716 Coils Coil 707 716 - -
Cla02g01918 716 Pfam AAA lid domain 334 368 IPR041083 -
Cla02g01918 716 PANTHER CELL DIVISION CONTROL PROTEIN 6 HOMOLOG 30 523 - -
Cla02g01918 716 Pfam AAA domain 152 271 IPR003593 -
Cla02g01918 716 PANTHER CELL DIVISION CONTROL PROTEIN 6-RELATED 30 523 - -
Cla02g01918 716 MobiDBLite consensus disorder prediction 28 84 - -
Cla02g01918 716 CDD Cdc6_C 425 507 IPR015163 -
Cla02g01918 716 Pfam CDC6, C terminal winged helix domain 432 510 IPR015163 -
Cla02g01918 716 ProSiteProfiles Flavodoxin-like domain profile. 519 707 IPR008254 GO:0010181
Cla02g01918 716 Gene3D - 520 716 IPR029039 -
Cla02g01918 716 Gene3D - 302 421 - -
Cla02g01918 716 SMART Cdc6_C_2 432 511 IPR015163 -
Cla02g01918 716 MobiDBLite consensus disorder prediction 47 84 - -
Cla02g01918 716 TIGRFAM flav_wrbA: NAD(P)H:quinone oxidoreductase, type IV 522 714 IPR010089 GO:0003955|GO:0010181
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g01918 K02213 CDC6; cell division control protein 6 - csv:101205741 877.085
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g02187 Cla-Chr1:35913753 Cla02g01918 Cla-Chr2:34320146 4.62E-89 dispersed
Cla02g01918 Cla-Chr2:34320146 Cla09g01743 Cla-Chr9:34768740 1.40E-77 dispersed
Cla10g00555 Cla-Chr10:7693217 Cla02g01918 Cla-Chr2:34320146 6.86E-10 dispersed
Cla02g01918 Cla-Chr2:34320146 Cla10g00550 Cla-Chr10:7378620 3.26E-94 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi6g603 . . Bda02g00567 . Bpe01g00094 . . . . . . . . . . Cpe05g00960 . . . . . . . . Cla02g01918 Cam02g2032 Cec02g2065 Cco02g2101 Clacu02g2016 Cmu02g1962 Cre02g2271 Cone1ag0578 Cone5ag1087 . . . Csa06g01432 Chy11g01344 Cme11g01372 . Blo14g00087 . . . . . . Sed05g3758 Cmo02g00757 . Cma02g00750 . Car02g00541 . . . Bhi10g00805 Tan05g0463 Cmetu11g0803 . Hepe08g0738 . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cla08g00013 . 1 94 Core DNA Replication Machinery Family AT4G14700 75.5 1.5e-37 155.2
Cla08g00013 . 1 94 Core DNA Replication Machinery Family AT4G12620 78.7 2.4e-38 157.9
Cla08g01551 . 2 390 Core DNA Replication Machinery Family AT2G37560 60.7 1.9e-138 489.2
Cla07g00440 . 9 451 Core DNA Replication Machinery Family AT2G01120 55.2 2.0e-129 459.5
Cla06g00340 . 89 622 Core DNA Replication Machinery Family AT4G29910 58.2 9.2e-175 610.5
Cla11g00892 . 1 283 Core DNA Replication Machinery Family AT1G26840 66.1 4.0e-94 341.7
Cla09g02206 . 68 839 Core DNA Replication Machinery Family AT1G79150 57.7 1.4e-235 813.1
Cla10g01241 . 8 946 Core DNA Replication Machinery Family AT1G44900 75.0 0.0e+00 1346.6
Cla01g02393 . 83 595 Core DNA Replication Machinery Family AT5G46280 84.1 1.5e-249 859.0
Cla02g00495 . 1 845 Core DNA Replication Machinery Family AT2G16440 76.2 0.0e+00 1153.7
Cla11g00330 . 963 1697 Core DNA Replication Machinery Family AT2G07690 78.4 0.0e+00 1112.4
Cla01g02533 . 7 869 Core DNA Replication Machinery Family AT5G44635 65.0 0.0e+00 1080.1
Cla09g00472 . 45 763 Core DNA Replication Machinery Family AT4G02060 85.3 0.0e+00 1219.9
Cla02g01918 . 55 521 Core DNA Replication Machinery Family AT2G29680 61.9 5.6e-163 571.2
Cla02g01918 . 37 482 Core DNA Replication Machinery Family AT1G07270 58.8 2.7e-143 505.8
Cla09g00820 . 323 915 Core DNA Replication Machinery Family AT3G25100 76.2 1.2e-257 885.9
Cla10g01954 . 12 826 Core DNA Replication Machinery Family AT3G09660 69.0 2.4e-309 1058.1
Cla09g01540 . 9 635 Core DNA Replication Machinery Family AT2G14050 79.5 4.4e-290 993.8
Cla09g01539 . 19 120 Core DNA Replication Machinery Family AT2G14050 74.5 2.6e-40 164.1
Cla02g01165 . 1909 2314 Core DNA Replication Machinery Family AT2G20980 51.4 6.2e-101 364.8
Cla09g00243 CCT,ECH 1 192 Core DNA Replication Machinery Family AT1G80190 67.5 1.1e-72 270.0
Cla11g00591 . 1 184 Core DNA Replication Machinery Family AT1G19080 68.5 2.0e-70 262.3
Cla11g00591 . 1 184 Core DNA Replication Machinery Family AT3G55490 68.5 2.0e-70 262.3
Cla05g00156 . 15 164 Core DNA Replication Machinery Family AT5G49010 65.3 1.6e-49 193.0
Cla02g01214 . 1 1546 Core DNA Replication Machinery Family AT5G67100 60.7 0.0e+00 1769.2
Cla04g01144 . 99 694 Core DNA Replication Machinery Family AT1G67630 54.7 5.5e-189 657.9
Cla06g00192 . 363 763 Core DNA Replication Machinery Family AT1G67320 65.3 3.5e-170 595.1
Cla08g00153 . 7 430 Core DNA Replication Machinery Family AT5G41880 65.5 1.6e-169 592.8
Cla01g01486 . 1 1033 Core DNA Replication Machinery Family AT5G63960 78.5 0.0e+00 1643.6
Cla10g01668 . 29 575 Core DNA Replication Machinery Family AT2G42120 60.5 4.1e-186 647.9
Cla06g00192 . 363 763 Core DNA Replication Machinery Family AT1G67320 65.3 3.5e-170 595.1
Cla01g00535 . 1 127 Core DNA Replication Machinery Family AT1G09815 60.8 3.4e-37 151.4
Cla02g02143 . 1 2095 Core DNA Replication Machinery Family AT1G08260 71.5 0.0e+00 2981.8
Cla09g02001 . 1 1737 Core DNA Replication Machinery Family AT1G08260 66.5 0.0e+00 2332.4
Cla02g02143 . 25 2202 Core DNA Replication Machinery Family AT2G27120 68.1 0.0e+00 2948.3
Cla09g02001 . 1 1844 Core DNA Replication Machinery Family AT2G27120 64.0 0.0e+00 2351.2
Cla04g01237 . 530 980 Core DNA Replication Machinery Family AT5G22110 69.8 1.1e-182 636.7
Cla02g02185 . 228 973 Core DNA Replication Machinery Family AT5G22010 72.2 1.6e-301 1032.3
Cla10g00332 . 1 203 Core DNA Replication Machinery Family AT1G63160 91.6 2.0e-105 379.4
Cla04g00481 . 73 444 Core DNA Replication Machinery Family AT5G27740 76.3 1.1e-162 569.7
Cla11g01553 . 1 334 Core DNA Replication Machinery Family AT1G21690 82.1 4.5e-153 537.7
Cla08g00608 . 1 412 Core DNA Replication Machinery Family AT1G77470 66.4 5.3e-147 517.7
Cla11g00142 . 26 587 Core DNA Replication Machinery Family AT2G06510 67.7 8.4e-238 820.1
Cla10g00108 . 32 703 Core DNA Replication Machinery Family AT2G06510 50.4 1.0e-195 680.2
Cla06g01537 . 1 643 Core DNA Replication Machinery Family AT5G08020 66.1 4.1e-245 844.3
Cla10g00108 . 10 811 Core DNA Replication Machinery Family AT5G45400 50.3 1.8e-227 786.2
Cla06g01537 . 1 638 Core DNA Replication Machinery Family AT5G61000 64.0 3.2e-237 818.1
Cla10g00108 . 5 797 Core DNA Replication Machinery Family AT4G19130 53.7 3.0e-224 775.4
Cla03g01715 . 1 386 Core DNA Replication Machinery Family AT5G26680 78.5 4.7e-176 614.4
Cla07g01491 . 1 328 Core DNA Replication Machinery Family AT2G25100 60.7 1.0e-110 396.7
Cla02g02101 . 44 890 Core DNA Replication Machinery Family AT1G08130 62.1 7.1e-282 966.8
Cla02g02101 . 204 890 Core DNA Replication Machinery Family AT1G49250 60.3 9.2e-227 783.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003604 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 0 2 2 1 1 3 11 1 45