Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g01918 ATGCCAGCCATTACTCGAGCAAATCACTGTAAGATCGAGAGTGGAACGAATTTTAACGATGTTACGGTTGCAAGGATGACTGATGGAGGTTCTGTAATGGAAACCACTCCTCCGAAGCGGAAACTGAGATCCAGTGACGTGCAGAGGCAACAAAGCCCTAACTCTGCGCCGGTGAGTTGGAAATCGCCTCGTCGGCGCCTTAATTCGAGTCCAAAATGCCCTCCACAGAGCGATGGGAAAACGTTTAACGATGGCTTTTCTAACTTACATAGTTCCCCGATAAGATGCTTGTTGAAGGACCTTATTGTCAAACCAGATTGGAATCCTAAGGATACTGAACATATAAAAACAGCAAAGGAAGCATTGCATGTATCGACAGCTCCAACTACAATCATGTGCCGTGAAGATGAACAAAGTAAAATCTTCAATTTCTGCAAGGCTTGTGTGGAGCAAGAAAAAGCTGGTAGTTTGTATGTTTGCGGGTGTCCAGGAACTGGCAAATCCTTGTCCATGGAAAAAGTGAAAGAGCAGTTGGCTGCTTGGGTGAAAGAGTCAGGTCTTCAGCTTCCAGACATCTTGTCCATAAACTGCACTTCCTTAGCTAACACATCCGATATTTTCATTAAGATGATGGGTGAAGCCCAACCACAAAAGAAAAGGAATGGCTCTTTAACACCCTTGCAACATCTTCAACGCTTGTACTCCCAAAAGGCAGAGTCATCTTGCATGAAGATGATGTTGATAATAGCTGATGAATTGGATTATTTAATTACAAAGGATAAAGCAGTGCTACATGATCTGTTCATGCTCACAACTTTCCCATTTTCAAGATGTATTTTGATAGGAATTGCAAATGCTATTGACTTAGCAGATCGCTTTCTTCCAAGACTTCAGGCTTTGAATTGCAAACCTCAGGTCGTAACTTATAGGGCATATTCCAAGGAACAGATCCTCAAGATTCTTCAACAAAGGTTAATTGTGCTTCCTTTCATTGTCTTTCAGTCGCAAGCACTGGAGCTTTGTGCTAGAAAAGTTGCAGCTGTCTCTGGAGATATGAGAAAAGCTCTCTGTGTTTGCAGGAATGCCATTGAATTGTTGGAGGTGGAACTCAAAGCATCCTCTAAGGAGCTGAACCATAATGACGCATGTGATGCTTCAGCACCACCTGAGCTTGTCAAAAGACGAGAGTCTCAGATTGTGAGGTTGGACCATATGGCTGTTGCCTTATCCAAGACTTTTAAATCACCAGCAGTAGAAACCATACAATCTCTTCCTCAGCATCAACAGATAATTTTATGCTCTGTTGTGAAACTTGTTCGTGGAGGAAAGAAGGATACAACTATAGGAGAGCTAAACAAATCATACGTAGAGATATGTAAATCAACACTAATCCCACCGGTGGGGAGTTTGGAACTTACAAATATGTTCACAGTGCTAAACGACCAGGGGCTTCTCAAACTTGGGCAATCTCGAGATGATAAGATGAGGCGAGTGTTGTTGAAAGTTGATGAAGCTGATGTCATGTTCGCATTACAGGGAATACGCTTCTTTCGAAATTGCCTACAGTACTATTCTTTACATGGCCATGTCGGGACTATGGCAAGGAGAATTCAACAGGGAGCTAATTCAGTTCAAGGGGTTGAAGCCACTCTGTGGCAGGTGCCTGAGACATTGTCTGATGTGATACTGAAAAAGATCAAAGCTCCTCCAAAAGCAGATGATGTGCAAGAGATCAGGCCAGAACAACTGCTGGAAGCAGATGGTTTTCTCTTCGGGTTTCCATCGCGATTCGGGGTTATGGCTGCTCAATTCAAGGCATTCTTTGATGCAACAAGTGAGATATGGGAGTCTCAAGCACTTGCTGGTAAACCTGCTGGCATTTTCTGGAGTACTGGTTTTCATGGTGGAGGTCAGGAGCTTACTGCATTGACGGCAATAACGCAGCTAGCACATCACGGAATGATATTTGTACCTCTTGGTTACACATTCGGGAGTAAGATGATGGAGATGGATGAGGTGAAAGGTGGCTCTCCTTATGGCGCTGGAACTTTTGCAGCCGATGGAACTCGACACCCGACAGAGCTGGAGCTTGAACAGGCCTTTTACCAAGGTAAGTACGTTGCTGAATTAACCAAGAAGCTCAAAAACTAA 2151 43.75 MPAITRANHCKIESGTNFNDVTVARMTDGGSVMETTPPKRKLRSSDVQRQQSPNSAPVSWKSPRRRLNSSPKCPPQSDGKTFNDGFSNLHSSPIRCLLKDLIVKPDWNPKDTEHIKTAKEALHVSTAPTTIMCREDEQSKIFNFCKACVEQEKAGSLYVCGCPGTGKSLSMEKVKEQLAAWVKESGLQLPDILSINCTSLANTSDIFIKMMGEAQPQKKRNGSLTPLQHLQRLYSQKAESSCMKMMLIIADELDYLITKDKAVLHDLFMLTTFPFSRCILIGIANAIDLADRFLPRLQALNCKPQVVTYRAYSKEQILKILQQRLIVLPFIVFQSQALELCARKVAAVSGDMRKALCVCRNAIELLEVELKASSKELNHNDACDASAPPELVKRRESQIVRLDHMAVALSKTFKSPAVETIQSLPQHQQIILCSVVKLVRGGKKDTTIGELNKSYVEICKSTLIPPVGSLELTNMFTVLNDQGLLKLGQSRDDKMRRVLLKVDEADVMFALQGIRFFRNCLQYYSLHGHVGTMARRIQQGANSVQGVEATLWQVPETLSDVILKKIKAPPKADDVQEIRPEQLLEADGFLFGFPSRFGVMAAQFKAFFDATSEIWESQALAGKPAGIFWSTGFHGGGQELTALTAITQLAHHGMIFVPLGYTFGSKMMEMDEVKGGSPYGAGTFAADGTRHPTELELEQAFYQGKYVAELTKKLKN 716
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 34320146 34330958 - ClCG02G019640.1 Cla02g01918 268044
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g01918 716 Gene3D - 111 301 IPR027417 -
Cla02g01918 716 SUPERFAMILY Flavoproteins 523 715 IPR029039 -
Cla02g01918 716 Gene3D - 422 511 IPR036388 -
Cla02g01918 716 Pfam NADPH-dependent FMN reductase 531 660 IPR005025 GO:0016491
Cla02g01918 716 SMART AAA_5 153 303 IPR003593 -
Cla02g01918 716 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 119 369 IPR027417 -
Cla02g01918 716 CDD AAA 149 297 - -
Cla02g01918 716 SUPERFAMILY Winged helix DNA-binding domain 418 520 IPR036390 -
Cla02g01918 716 Coils Coil 707 716 - -
Cla02g01918 716 Pfam AAA lid domain 334 368 IPR041083 -
Cla02g01918 716 PANTHER CELL DIVISION CONTROL PROTEIN 6 HOMOLOG 30 523 - -
Cla02g01918 716 Pfam AAA domain 152 271 IPR003593 -
Cla02g01918 716 PANTHER CELL DIVISION CONTROL PROTEIN 6-RELATED 30 523 - -
Cla02g01918 716 MobiDBLite consensus disorder prediction 28 84 - -
Cla02g01918 716 CDD Cdc6_C 425 507 IPR015163 -
Cla02g01918 716 Pfam CDC6, C terminal winged helix domain 432 510 IPR015163 -
Cla02g01918 716 ProSiteProfiles Flavodoxin-like domain profile. 519 707 IPR008254 GO:0010181
Cla02g01918 716 Gene3D - 520 716 IPR029039 -
Cla02g01918 716 Gene3D - 302 421 - -
Cla02g01918 716 SMART Cdc6_C_2 432 511 IPR015163 -
Cla02g01918 716 MobiDBLite consensus disorder prediction 47 84 - -
Cla02g01918 716 TIGRFAM flav_wrbA: NAD(P)H:quinone oxidoreductase, type IV 522 714 IPR010089 GO:0003955|GO:0010181
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g02187 Cla-Chr1:35913753 Cla02g01918 Cla-Chr2:34320146 4.62E-89 dispersed
Cla02g01918 Cla-Chr2:34320146 Cla09g01743 Cla-Chr9:34768740 1.40E-77 dispersed
Cla10g00555 Cla-Chr10:7693217 Cla02g01918 Cla-Chr2:34320146 6.86E-10 dispersed
Cla02g01918 Cla-Chr2:34320146 Cla10g00550 Cla-Chr10:7378620 3.26E-94 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g01918 K02213 - csv:101205741 877.085