Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g01920 ATGGCGCCAATTCCCAGATCTCTCTCCCACAAATTCTTCTTCCTTTTACTCCTCATTCTCCACGTCGGCTGCTTCCTTCTTACCACCGCCGACCACCGTCGCCGCCGCCACCACCGTCCTACTCCCTCCTGTTTGAAGCCACACAAACTCAAATCCCTAGCTTCCTCTTTTTCATTTCTCAAACGAATCTTCTCTTCCAAGACTTGCAAAATGGCAATCGAAACCGCTCGCTCGCCTTCCACTCCCGCTAGGTCATCGCAGCACTCCATCGTCACGCTCATCCAACAGGAGATTCCTCCTCCGCCGATTCCGGAGACTCATCCTCCAACCGGAACGCCGCAGGATTCAGATATCACTACGGCAGAGCCGAATCAATCTTTTCCTCTTCGAAACGATATCTTCCCCTGTACTGCTTGTGGCGAGATTTTTCCCAAAGCGCAACTCCTCGAACAGCATCAATCGATTAAACACGCTGTGTCGGAGCTTGCTGATTCGGATTCTGGAAAGAATATTGTTCGGATTATTTTCGAAACTGGATGGACGAGTAGAGAAAAAAGCCCTAAAATCCTTCGAATCTTGAAAATCCACAATAGTCAGAAGATTCTTTCCAGATTTGAAGAGTATAGAGAGACGGTGAAGGCGAAAGCGGCTATACACGGCGGCGTAAAGCGGCGGGATGAGCGGTGCATTGCCGACGGGAACGAGCTTCTGAGGTTTCATTGTTCGACGTTTTTATGCGATTTGGGGCAAAATGGTAATTCCAGTCTTTGCGGGCAGCAATTTTGTAGTATTTGTGGGATAATTAAATCGGGATTCTCACACAAGTTGGATGGAATTTCGACACTATCGAGTAGCTGGAGGGCACACGTGGCGATCCCTGAGGACATCGAAGAGGAGTTCAAGTTTCTGAATGCGAAGCGGGCGATTTTGGTTTGTCGGGTTGTGGCGGGTCGGGTCGGCTCAGACGCCGATGAGCCGGAAAAAGACGGCGGAGGGTTTGACTCCGTCGTTGGGAGGAGTGGGAGTGGGGCCCAGACCACGTTGGATGAAGAAGAGCTGTTGGTTTTCAATCCGAGGGCTGTGCTCCCCTGCTTCGCGATTGTATACGAAATCTAA 1116 50.54 MAPIPRSLSHKFFFLLLLILHVGCFLLTTADHRRRRHHRPTPSCLKPHKLKSLASSFSFLKRIFSSKTCKMAIETARSPSTPARSSQHSIVTLIQQEIPPPPIPETHPPTGTPQDSDITTAEPNQSFPLRNDIFPCTACGEIFPKAQLLEQHQSIKHAVSELADSDSGKNIVRIIFETGWTSREKSPKILRILKIHNSQKILSRFEEYRETVKAKAAIHGGVKRRDERCIADGNELLRFHCSTFLCDLGQNGNSSLCGQQFCSICGIIKSGFSHKLDGISTLSSSWRAHVAIPEDIEEEFKFLNAKRAILVCRVVAGRVGSDADEPEKDGGGFDSVVGRSGSGAQTTLDEEELLVFNPRAVLPCFAIVYEI 371
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 34350878 34351993 - ClCG02G019660.1 Cla02g01920 268046
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g01920 371 SUPERFAMILY ADP-ribosylation 160 370 - -
Cla02g01920 371 ProSitePatterns Zinc finger C2H2 type domain signature. 136 157 IPR013087 -
Cla02g01920 371 MobiDBLite consensus disorder prediction 98 124 - -
Cla02g01920 371 ProSiteProfiles Zinc finger C2H2 type domain profile. 134 162 IPR013087 -
Cla02g01920 371 MobiDBLite consensus disorder prediction 110 124 - -
Cla02g01920 371 Gene3D - 158 370 - -
Cla02g01920 371 PANTHER NUCLEIC ACID BINDING PROTEIN 7 369 - -
Cla02g01920 371 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 7 369 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00376 Cla-Chr1:4156451 Cla02g01920 Cla-Chr2:34350878 1.74E-35 dispersed
Cla02g01920 Cla-Chr2:34350878 Cla03g00889 Cla-Chr3:12495477 5.67E-65 dispersed
Cla02g01920 Cla-Chr2:34350878 Cla10g00594 Cla-Chr10:8771237 4.39E-56 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60715 None None None None Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g01920 - - csv:101205506 595.504