Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g01948 ATGGAGCAGAAGAAGAGGGAGTCCCAATTCGGTGGTGGTAATGGTTGTAGAAATGGCGATGAGAGAGTTCTTCTGTGGGAGGAGGGACTGCCGGACGTTGAAAAATTAACCCCTCTTTCTCAATCGCTGATATCGCAGGAACTTGCTTCGGCGTTTAGGATTTTGATGGAACCTCATCCGAGTTTAATAGATGTTAATTCGGCATCGAAGATGACGATAATGAATATTCGCGATGAACAGTCGGAAGGATACAGAAGTTTTGAGTTTACGTACGATCAGACACGGAGGGAAGACGTTGTGATGGTTGAATCGGACGAGGCGATAAATCCAGATGAGTTGGGATCCGATTCGCGGAAATTGAGGAGGGTTGATTCTGTTGAAGACACGAATTTAGCACCTCGGGCGGAGAGTTTGATTGAGGATGCGGCATTGGCTCGAACCTTGAAGCGGCCTAGGCTCGCTTGGACTCCGCAATTACACAAACGGTTCGTGGATGTGGTTTCTCATCTAGGGCTCAAAGACGCAGCTCCCAAAGCCATTATGCAAATGATGAATGTGGAGGGATTGACTCGCGAGAACGTTGCTAGTCATCTTCAGAAGTATCGACTTTACTTGAAGAGAACGCAGATATCCTCGACGGCTGACGAAGCTCTGGTTCCGATTCCGGTCACGCAGGACTCTCATGATTCTTCTCCCAGTGCCGATACACATGGAAACGGCTACTTTCCGGCTACTTACCCGATGATTTATGTGCCATCTCCGATGATGCCTATGATGTTTTATGGTATGGGCGCTCACGGCCATGGTCTTAGTCAAACCGGCATGCGAATGGTTAACCTGAGCACTGTACCTACCCACTCGTGTAGCTCGAAAGGGCAGCATGATTGA 888 48.65 MEQKKRESQFGGGNGCRNGDERVLLWEEGLPDVEKLTPLSQSLISQELASAFRILMEPHPSLIDVNSASKMTIMNIRDEQSEGYRSFEFTYDQTRREDVVMVESDEAINPDELGSDSRKLRRVDSVEDTNLAPRAESLIEDAALARTLKRPRLAWTPQLHKRFVDVVSHLGLKDAAPKAIMQMMNVEGLTRENVASHLQKYRLYLKRTQISSTADEALVPIPVTQDSHDSSPSADTHGNGYFPATYPMIYVPSPMMPMMFYGMGAHGHGLSQTGMRMVNLSTVPTHSCSSKGQHD 295
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 34576637 34577524 - ClCG02G019950.1 Cla02g01948 268074
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g01948 295 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 17 260 IPR044841 GO:0003700|GO:0006355
Cla02g01948 295 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 152 206 IPR017930 -
Cla02g01948 295 Gene3D - 147 208 - -
Cla02g01948 295 Pfam Myb-like DNA-binding domain 153 202 IPR001005 -
Cla02g01948 295 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 151 203 IPR006447 GO:0003677
Cla02g01948 295 SUPERFAMILY Homeodomain-like 147 207 IPR009057 -
Cla02g01948 295 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 17 260 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cla02g01948 Cla03g00126 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g01948 Cla-Chr2:34576637 Cla04g00590 Cla-Chr4:19825042 1.69E-32 dispersed
Cla02g01948 Cla-Chr2:34576637 Cla03g00126 Cla-Chr3:1269309 2.05E-47 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60717 PF00249 Myb_DNA-binding 3.00E-09 CL0123 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g01948 - - csv:116404543 536.569