Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g01955 ATGCCTTATCGTCATTCTCAATCAGTCTGTTTCCAGGAAAGAACTGGAAATCATAATTTCAACTTTATAAACCTAATAACTCACCGCCTGATTCACCCCCTTCTCCATCGCTTGCTTTTCCCCTGTTTCTACCTCAGCTTCATTCTTGGATTCTGTTTCTATTTGGAGGCTTACATAACTATGGATCACCCAAATCTTAACGATTTCCCAGTTCGTGGAATTGATTATCAAACCCCTTTAACCCAATTTCACGATCAAACTTCTTTACCCACTTCATATCTATACCCAGAATTCGAAAACAGTTTTGTATTCAACAACCCATCTCCAGATCTTGTTCCTTTCGTCGACCCCAACGGTTCTTCAGCGGCGGAGTTGAAATTAAGCGAAGGTGTGGGTTCTTCAGGGCGAAGCCCTGGTGGCGATTCTTCCTCAGATGAGAGTGATTTCAGGGAAAGTGTTCTCAAGTACATAAGCCAAATGCTTATGGAAGAGAATTTGGAAGAGAAGCCTTGTATGTTTTATGATCCCTTGGGCCTTGAAGTTACCGAGAAATCATTCTATGATGCTCTTGTTAAGAATTACCCTCCTTCTCCTAACCAACCTCCCCTCTTGGATTGTGACAGTGATCTTGCTAGTACTACTCTTAGTGTTCCCAATACCAATTCACCTGACTCCCAATGGGTTGTTGATCCTGGAGAACATAAATCCTCTGTACTTCCAAACCCTGTTCTTAGTAGTCATGAGCTTGTCAATGAGTTGTTGGCTCATAATATCTTTAGTGATAGCACATCTATATTGCAATATCAAAAGGGGTTGGAGGAGGCAAGGAAGTTTCTTCCAGTGGGTACCCAGTTGAATATTGATCTTGGCAGTAGCATGGTACCAGGAGTAGTTTCTAAGACGGAGAATTCGCCGAATGGATCGAAGCGAAGGAAGAGTCGTGAACGTGAAGATGTGGACTTGGATTCAGAAGAAGGGAGGAGAAACAAGCATTCAACCATTTCTGTGGATGAGGAAGAATTATCCGAGATGTTTGATAAGGTTTTACTTCATGATTGTGGAAATGAGACTACTGCAAATGGTGGGCGTGAAAATTTGCAGTATAACGGTCAACTTCATGGATCGATTACTTCAAAAGCTCGGGAAAAGAAACAGGAGAAGAGAAAAGACTCTGTGGATTTGAGAAATCTTCTGATATTATGCGCACAAGCTGTGTCTTCTGATGATCGTCGGATTGCGTATGAACTGCTTAAGCAGATTAGGCAGCATTCTACAATCATTGGGGATGGTTTTCAAAGAATGGCTCATTTCTTTGCTAATGCTCTTGAGGCTCGTATGGTTGGGACTGGCACAGGAAGTAGAATCTACTATGAATCATTAGCTCAAAGCAAAATTTCAGCTGCTGATATGTTGAAAGCTTACCAAGCTCACTTATCATCCTGCCCTTTTAAGAAGCTCTCACTCTTTTTCATGATTAAAATGATTTTGAAGGTTGCTGAGAATGCTAAAAGTCTTCATGTTATTGATTTTGGCATTTGTTATGGTTTCTTATGGCCAATGTTAATTCAGTTTCTTGCACAACTACCTGATGGTCCTCCCAATCTACGCATTACCGGTATAGATCATCCTCTACCAGGATTTCGTCCAGCAGAAAAGATCGTCGAGTCAGGCCGTCGTTTGGAAAAATACTGTGAGCGGTTTAATGTTCCTTTTCAATATCAAGCCATACCATCAAATAACTGGGAAACTATCCGAGTTGAGGACTTAAAGCTCGATAGCAATGATGTGCTTGTTGTGAACTGTTTCTACAGGTTTAACAACCTACTTGACGAAACTGTTGAAGAAAGTAGTCCACGGGACGCTGTTCTTCGTTTAATAAGAAAGATGAATCCAAACATCTTTGTACATTCTGTGGTTAATGGATCCTACCATGCACCATTCTTCATAACACGATTCAGGGAAGCACTCTTCCATTTCTCTGCATTATATGATGCTCTAGACGTTAATTTACCTCGTGACAGCGATGAGAGGATGATGCTAGAGAGAGAGTTTCTCGGTCGCCAAATTATGAACGTCGTAGCATGTGAGGGTGTCCAAAGGGTTGAGAGGCCTGAAACCTATAAGCAATGGCAGGTTAGATGTATGAGGGCAGGTTTCAAGCAACTTCCTTTAGACAAAGAGATCATGAACAAGTTTAGGAGCAAACTAACGTCCTATTACCACAAAGATTTTGTACTAGATGAAGATGAGGGTTGGATGCTTCAAGGATGGAAAGGCCGGATCGTCTATGCTTCTTGTTGCTGGGTACCAGCATAG 2316 41.67 MPYRHSQSVCFQERTGNHNFNFINLITHRLIHPLLHRLLFPCFYLSFILGFCFYLEAYITMDHPNLNDFPVRGIDYQTPLTQFHDQTSLPTSYLYPEFENSFVFNNPSPDLVPFVDPNGSSAAELKLSEGVGSSGRSPGGDSSSDESDFRESVLKYISQMLMEENLEEKPCMFYDPLGLEVTEKSFYDALVKNYPPSPNQPPLLDCDSDLASTTLSVPNTNSPDSQWVVDPGEHKSSVLPNPVLSSHELVNELLAHNIFSDSTSILQYQKGLEEARKFLPVGTQLNIDLGSSMVPGVVSKTENSPNGSKRRKSREREDVDLDSEEGRRNKHSTISVDEEELSEMFDKVLLHDCGNETTANGGRENLQYNGQLHGSITSKAREKKQEKRKDSVDLRNLLILCAQAVSSDDRRIAYELLKQIRQHSTIIGDGFQRMAHFFANALEARMVGTGTGSRIYYESLAQSKISAADMLKAYQAHLSSCPFKKLSLFFMIKMILKVAENAKSLHVIDFGICYGFLWPMLIQFLAQLPDGPPNLRITGIDHPLPGFRPAEKIVESGRRLEKYCERFNVPFQYQAIPSNNWETIRVEDLKLDSNDVLVVNCFYRFNNLLDETVEESSPRDAVLRLIRKMNPNIFVHSVVNGSYHAPFFITRFREALFHFSALYDALDVNLPRDSDERMMLEREFLGRQIMNVVACEGVQRVERPETYKQWQVRCMRAGFKQLPLDKEIMNKFRSKLTSYYHKDFVLDEDEGWMLQGWKGRIVYASCCWVPA 771
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 34647663 34649978 - ClCG02G020030.2 Cla02g01955 268081
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g01955 771 PANTHER SCARECROW-LIKE PROTEIN 34 254 770 - -
Cla02g01955 771 PANTHER SCARECROW-LIKE PROTEIN 34 127 202 - -
Cla02g01955 771 MobiDBLite consensus disorder prediction 305 333 - -
Cla02g01955 771 MobiDBLite consensus disorder prediction 294 333 - -
Cla02g01955 771 ProSiteProfiles GRAS family profile. 385 769 IPR005202 -
Cla02g01955 771 MobiDBLite consensus disorder prediction 128 148 - -
Cla02g01955 771 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 254 770 IPR005202 -
Cla02g01955 771 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 127 202 IPR005202 -
Cla02g01955 771 Pfam GRAS domain family 394 768 IPR005202 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g01955 Cla-Chr2:34647663 Cla11g00724 Cla-Chr11:10282118 1.71E-60 dispersed
Cla06g01717 Cla-Chr6:30710499 Cla02g01955 Cla-Chr2:34647663 1.94E-54 transposed
Cla09g00909 Cla-Chr9:9478221 Cla02g01955 Cla-Chr2:34647663 3.83E-65 transposed
Cla10g02012 Cla-Chr10:35930830 Cla02g01955 Cla-Chr2:34647663 3.43E-180 wgd
Cla02g01955 Cla-Chr2:34647663 Cla03g00132 Cla-Chr3:1342433 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60718 PF03514 GRAS 1.00E-104 CL0063 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g01955 - - csv:101203568 1174.07