Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g01959 ATGGCCACTACCATTTCTCTCTGCATTGCTTCTCTTCTCTCATTTTCCCTCCTTGTCCAAGCCAGAATTCCCGGAGTTTACTCCGGCGGCCCATGGCAGAGCGCCCACGCCACTTTCTACGGTGGCGCCGACGCTTCCGGCACCATGGGTGGAGCTTGTGGGTACGGGAATTTGTACAGCCAAGGTTATGGCGTGAACACGGCGGCCCTGAGTACCGCATTGTTCAATAAGGGTCAGAGCTGCGGCGCTTGCTTTGAAATTAAGTGCGCTAATGACCCTATATGGTGCCATTCTGGTAGTCCCTCCATCTTGGTTACTGCTACTAATTTCTGCCCGCCCAACTATGCTCTTCCTAACGATAATGGAGGCTGGTGTAACCCTCCCCGGACTCACTTCGATCTTGCCATGCCTATGTTCCTTAAAATCGCTGAGTACCGCGCCGGAATCGTCCCCGTCTCTTACCGCCGGTGTATTCAAGATAGCACTGTACCATGCCGGAAGCAAGGAGGAATCAGGTTCACGATCAACGGGTTCCGTTACTTCAATTTGGTTCTAATCACCAACGTCGCAGGTGCAGGGGATATCGTGAGGGTTAGCGTCAAAGGAACAAGAACCGGGTGGATGAGCTTAACAAGAAACTGGGGGCAAAATTGGCAATCCAATGCCGTCTTAGTGGGCCAGGCTCTTTCTTTTAGAGTTACCGGCAGTGACCGACGAACCTCAACGTCATGGAACATAGTCCCCGCTCATTGGCAGTTCGGCCAAACTTTCACCGGCAAGAACTTCCGTGTTTAA 795 52.45 MATTISLCIASLLSFSLLVQARIPGVYSGGPWQSAHATFYGGADASGTMGGACGYGNLYSQGYGVNTAALSTALFNKGQSCGACFEIKCANDPIWCHSGSPSILVTATNFCPPNYALPNDNGGWCNPPRTHFDLAMPMFLKIAEYRAGIVPVSYRRCIQDSTVPCRKQGGIRFTINGFRYFNLVLITNVAGAGDIVRVSVKGTRTGWMSLTRNWGQNWQSNAVLVGQALSFRVTGSDRRTSTSWNIVPAHWQFGQTFTGKNFRV 264
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 34678805 34680520 + ClCG02G020060.2 Cla02g01959 268085
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g01959 264 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 180 259 IPR007117 -
Cla02g01959 264 Gene3D - 20 165 IPR036908 -
Cla02g01959 264 PRINTS Expansin/Lol pI family signature 207 221 IPR007118 GO:0005576
Cla02g01959 264 PRINTS Expansin/Lol pI family signature 31 46 IPR007118 GO:0005576
Cla02g01959 264 PRINTS Expansin/Lol pI family signature 147 163 IPR007118 GO:0005576
Cla02g01959 264 PRINTS Expansin/Lol pI family signature 245 259 IPR007118 GO:0005576
Cla02g01959 264 PRINTS Expansin/Lol pI family signature 71 89 IPR007118 GO:0005576
Cla02g01959 264 PRINTS Expansin/Lol pI family signature 49 67 IPR007118 GO:0005576
Cla02g01959 264 Gene3D - 170 262 IPR036749 -
Cla02g01959 264 PRINTS Expansin signature 103 113 IPR002963 GO:0009664
Cla02g01959 264 PRINTS Expansin signature 122 139 IPR002963 GO:0009664
Cla02g01959 264 PRINTS Expansin signature 89 100 IPR002963 GO:0009664
Cla02g01959 264 PRINTS Expansin signature 216 237 IPR002963 GO:0009664
Cla02g01959 264 PRINTS Expansin signature 245 261 IPR002963 GO:0009664
Cla02g01959 264 PRINTS Expansin signature 62 76 IPR002963 GO:0009664
Cla02g01959 264 PRINTS Expansin signature 139 152 IPR002963 GO:0009664
Cla02g01959 264 SUPERFAMILY Barwin-like endoglucanases 31 188 IPR036908 -
Cla02g01959 264 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 50 170 IPR007112 -
Cla02g01959 264 Pfam Lytic transglycolase 67 154 IPR009009 -
Cla02g01959 264 PANTHER EXPANSIN-A15 6 263 IPR002963 GO:0009664
Cla02g01959 264 SMART dpbb_1 67 154 IPR007112 -
Cla02g01959 264 Pfam Expansin C-terminal domain 171 248 IPR007117 -
Cla02g01959 264 PANTHER EXPANSIN 6 263 - -
Cla02g01959 264 SUPERFAMILY PHL pollen allergen 167 259 IPR036749 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cla02g01959 Cla03g00138 CCT
Cla02g01959 Cla03g00138 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g01959 Cla-Chr2:34678805 Cla07g00480 Cla-Chr7:6785317 4.79E-122 dispersed
Cla01g00841 Cla-Chr1:10187801 Cla02g01959 Cla-Chr2:34678805 1.48E-68 transposed
Cla02g01959 Cla-Chr2:34678805 Cla03g00138 Cla-Chr3:1443303 2.40E-168 wgd
Cla02g01959 Cla-Chr2:34678805 Cla04g00803 Cla-Chr4:23068149 1.77E-168 wgd
Cla02g01959 Cla-Chr2:34678805 Cla07g00313 Cla-Chr7:3591610 1.41E-161 wgd
Cla02g01959 Cla-Chr2:34678805 Cla09g01916 Cla-Chr9:36830486 1.49E-126 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g01959 - - csv:101203979 522.702