Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g01969 ATGGGTAACGGGATTGGGAAGCTCGGCGTTTGCTTCACAGGAATCAACGACGGTAGGCGGCGGCCGGATATTTCCGTTCTGTTAACAAATCCACTAGATGAAGGTCTGGGGCACTCGTTTTGCTATGTCCGGCCGGATCCCTTAAGACTTTCGTCATCAAAAGTTCATTCCGAAGAAACCACCACTTTCCGATCAATCTCCGGCGCCTCTGTAAGTGCAAATACATCAACGCCTCTTTCTACTGCTCTTGTTGATCTGTATTCATACAATAGCATTGATCGAGCGGCGGCGTTTGAGAGTTCAACTTCTTTCGCTTCAATCCCTTTGCAACCGATCCCTAGAAACATGATAAATTCTGGTCCGATTTCGGGGAATTTCAATGGAATCCCCTGTTCTGGGCCTTTGGAAAGAGGGTTTTTATCGGGTCCAATCGAGCGAGGGTTTATGTCGGGTCCACTGGATCGGGGGATTTTTTCGGGTCCTCTTGAAAATTCTACATCCACTGAATTTCAGAGGAGTTTTTCTCATGGTGGTGGGTTTAATTCCAGATCTAGATCAAGAAAAAGCCGGTTAATTCGAATTCTGAGAACTGCAATTTCCAAGTCGATTCATCGAGGGCAAAATTCCATTGTGGCTCCGATTAAACCGGTTAAAGAACCCGATTGGATCGTCTTGCCCGAGAAGCATAACGAGAATTTGACTGTGAGTAGTTTGAATTTCAGTAGTGAAGGGAGTTTGGAGGATGATGATTCAATGGAAAGCCAAAATCTGCAGTGGGCTCAAGGAAAAGCAGGGGAAGATCGAGTTCATGTTGTGGTTTCTGAAGAACATGGATGGGTTTTCGTTGGGATTTATGATGGATTTAACGGTCCTGATGCTCCTGATTATCTCTTGTCCAATTTATATTCCTCTGTTCATAAAGAACTTAAAGGTTTGTTATGGGACGAAAAGCTCGATTCCGCGGGTGTTGCTGCTCCGGCAACTTCCCCTGTTCGTTCTGAGAATCCATGTTTAGAAACAAGAGATTTGGAGAGGAATCGAGTGAGTGATGCTTGTTCTCAATGTGTAGAACAAGAGAATCATCCTTGTGTTAGTGGAGAAGGGAAATCTGGATTGAATTCTAGGAAAAGAAAAGGTAAGAATTTAAGAGGAAAGTTTAGAGGAGCTGCTGAGAAGTGGGAGGATAATCAACGGCGGTGGAAGTGTGAATGGGACCGAGAAAGATTAGAACTTGATCGGAGGTTAAAGGAGCAGTTGAATCGATCGGGATTGAACGGTTCGAGGTCGATTAATCATTCAGATGTTCTCAAAGCCCTATCCCAAGCATTGAAGAAAACAGAGGAGGCCTATTTGGATATTGCAGACAAGATGCTTGATGAAAATCCTGAACTGGCTTTGATGGGTTCTTGTGTGCTTGTGATGCTTATGAAAGGAGATGATGTTTATGTGATGAATGTTGGTGACAGCCGAGCTGTTTTAGCGCAGAAGGCGGAGCCTGATTATTGGCTCGGGAAGATTCGACAAGACTTGGAGAGGATTAATGAAGAGCCAGTTCATGACATTGAAGCATTAGATTGTGATAGAGCATTCACTTCTACTAACCTTACTGCTTTTCAGCTTTCTATGGATCATAGTACTAGTGTTGATGAGGAAGTTCAGAGAATAAGAAATGAACACCCTGATGATGCTAATGCCGTGATGAACGACCGTGTTAAAGGCTCGTTGAAAGTTACTCGGGCGTTCGGTGCTGGTTTCCTTAAACAGCCTAAATGGAACAATGCATTGTTAGAGATGTTCAGAATCGACTATGTCGGGAGATCGCCATACATCAATTGTTTACCATCTCTCCACCACCATAGATTGGGACCAAAAGACAGGTTTTTGATACTATCATCTGATGGACTCTACCAATACTTCACAAATGAAGAAGCTGTTTCTGAAGTCGAACTTTTCATCGCATTGCAACCTGAAGGAGACCCGGCTCAACATCTGGTTGAATTACTTCTGTTTCGGGCTGCAAAGAGAGCTGGTATGGATTTCCATGAGTTACTCGAAATACCGCAGGGCGACCGGAGGAAGTATCATGACGACGTATCAATCATTGTAATTTCATTAGAAGGAAGGATATGGAGATCTTGTGTATAA 2145 43.78 MGNGIGKLGVCFTGINDGRRRPDISVLLTNPLDEGLGHSFCYVRPDPLRLSSSKVHSEETTTFRSISGASVSANTSTPLSTALVDLYSYNSIDRAAAFESSTSFASIPLQPIPRNMINSGPISGNFNGIPCSGPLERGFLSGPIERGFMSGPLDRGIFSGPLENSTSTEFQRSFSHGGGFNSRSRSRKSRLIRILRTAISKSIHRGQNSIVAPIKPVKEPDWIVLPEKHNENLTVSSLNFSSEGSLEDDDSMESQNLQWAQGKAGEDRVHVVVSEEHGWVFVGIYDGFNGPDAPDYLLSNLYSSVHKELKGLLWDEKLDSAGVAAPATSPVRSENPCLETRDLERNRVSDACSQCVEQENHPCVSGEGKSGLNSRKRKGKNLRGKFRGAAEKWEDNQRRWKCEWDRERLELDRRLKEQLNRSGLNGSRSINHSDVLKALSQALKKTEEAYLDIADKMLDENPELALMGSCVLVMLMKGDDVYVMNVGDSRAVLAQKAEPDYWLGKIRQDLERINEEPVHDIEALDCDRAFTSTNLTAFQLSMDHSTSVDEEVQRIRNEHPDDANAVMNDRVKGSLKVTRAFGAGFLKQPKWNNALLEMFRIDYVGRSPYINCLPSLHHHRLGPKDRFLILSSDGLYQYFTNEEAVSEVELFIALQPEGDPAQHLVELLLFRAAKRAGMDFHELLEIPQGDRRKYHDDVSIIVISLEGRIWRSCV 714
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 34757872 34760987 + ClCG02G020180.1 Cla02g01969 268095
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g01969 714 SUPERFAMILY PP2C-like 263 706 IPR036457 -
Cla02g01969 714 PANTHER - 12 714 - -
Cla02g01969 714 SMART PP2C_4 250 703 IPR001932 -
Cla02g01969 714 Coils Coil 436 456 - -
Cla02g01969 714 CDD PP2Cc 431 705 IPR001932 -
Cla02g01969 714 Gene3D - 227 710 IPR036457 -
Cla02g01969 714 Pfam Protein phosphatase 2C 431 654 IPR001932 -
Cla02g01969 714 PANTHER PROTEIN PHOSPHATASE 2C 12 714 IPR015655 GO:0004722|GO:0006470
Cla02g01969 714 ProSiteProfiles PPM-type phosphatase domain profile. 249 705 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g01969 Cla-Chr2:34757872 Cla05g00646 Cla-Chr5:6027129 9.30E-13 dispersed
Cla10g00177 Cla-Chr10:1883487 Cla02g01969 Cla-Chr2:34757872 7.70E-47 transposed
Cla02g01969 Cla-Chr2:34757872 Cla04g00806 Cla-Chr4:23116963 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g01969 - - csv:101222644 1337.78