Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cla02g01971 | ATGGCAGAAGGGGAGGATATTCAGCCACTTGTCTGCGACAATGGAACAGGAATGGTCAAGGCTGGCTTTGCTGGAGATGATGCTCCAAGGGCCGTGTTTCCTAGTATAGTAGGTCGACCAAGGCATACTGGTGTGATGGTTGGAATGGGGCAAAAGGATGCGTATGTTGGGGATGAAGCTCAGTCGAAACGTGGTATATTAACACTGAAATATCCCATTGAACATGGTATAGTGAGCAATTGGGATGATATGGAGAAAATTTGGCATCATACCTTTTACAATGAACTCCGAGTGGCTCCTGAAGAGCACCCTGTCCTTCTCACTGAAGCACCTCTGAACCCTAAGGCAAACCGTGAAAAAATGACCCAAATCATGTTCGAAACCTTCAACACTCCTGCCATGTATGTCGCCATTCAGGCTGTTCTTTCCCTCTATGCTAGTGGACGCACAACTGGTATTGTCTTAGATTCTGGAGACGGTGTTAGTCACACTGTCCCAATTTACGAGGGGTATGCTCTTCCCCACGCCATACTCCGTCTCGACCTTGCTGGCCGTGACCTCACTGATGCCCTTATGAAAATCTTGACTGAACGTGGGTATTCCTTCACCACCACAGCTGAGCGTGAAATTGTGAGGGACATGAAGGAAAAACTAGCATATATTGCCCTTGACTTTGAGCAAGAACTTGAAACTTCCAAGACTGGTTCATCTGTTGAGAAGAGTTACGAACTGCCTGATGGGCAGGTAATCACAATTGGTGCAGAACGTTTTCGATGTCCTGAAGTTCTTTTCCAGCCTTCAATGATTGGAATGGAAGCTGCAGGCATTCATGAAACAACATATAACTCCATCATGAAATGTGATGTTGATATCAGGAAGGATCTGTATGGAAATATTGTTCTTAGTGGTGGATCAACCATGTTCCCTGGTATTGCTGACAGAATGAGCAAAGAAATAACTGCATTAGCCCCTAGCAGCATGAAAATAAAGGTGGTAGCCCCACCCGAAAGAAAGTACAGTGTCTGGATTGGTGGCTCCATTTTGGCCTCCCTCAGCACGTTTCAGCAGATGTGGATCGCAAAGGCAGAGTATGATGAGTCTGGTCCATCCATCGTGCACAGGAAATGCTTCTGA | 1134 | 46.21 | MAEGEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDFEQELETSKTGSSVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF | 377 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 2 | 34771151 | 34773000 | - | ClCG02G020200.1 | Cla02g01971 | 268097 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cla02g01971 | 377 | Gene3D | - | 10 | 371 | - | - | |
| Cla02g01971 | 377 | SMART | actin_3 | 7 | 377 | IPR004000 | - | |
| Cla02g01971 | 377 | SUPERFAMILY | Actin-like ATPase domain | 6 | 155 | IPR043129 | - | |
| Cla02g01971 | 377 | SUPERFAMILY | Actin-like ATPase domain | 149 | 377 | IPR043129 | - | |
| Cla02g01971 | 377 | Pfam | Actin | 5 | 377 | IPR004000 | - | |
| Cla02g01971 | 377 | ProSitePatterns | Actins and actin-related proteins signature. | 106 | 118 | IPR020902 | - | |
| Cla02g01971 | 377 | Gene3D | - | 140 | 340 | - | - | |
| Cla02g01971 | 377 | PANTHER | ACTIN 3 | 1 | 376 | - | - | |
| Cla02g01971 | 377 | ProSitePatterns | Actins signature 2. | 358 | 366 | IPR004001 | - | |
| Cla02g01971 | 377 | ProSitePatterns | Actins signature 1. | 55 | 65 | IPR004001 | - | |
| Cla02g01971 | 377 | Gene3D | Actin; Chain A, domain 4 | 182 | 273 | - | - | |
| Cla02g01971 | 377 | PANTHER | ACTIN | 1 | 376 | IPR004000 | - | |
| Cla02g01971 | 377 | CDD | NBD_sugar-kinase_HSP70_actin | 10 | 183 | - | - | |
| Cla02g01971 | 377 | PRINTS | Actin signature | 28 | 37 | IPR004000 | - | |
| Cla02g01971 | 377 | PRINTS | Actin signature | 51 | 62 | IPR004000 | - | |
| Cla02g01971 | 377 | PRINTS | Actin signature | 63 | 85 | IPR004000 | - | |
| Cla02g01971 | 377 | PRINTS | Actin signature | 117 | 130 | IPR004000 | - | |
| Cla02g01971 | 377 | PRINTS | Actin signature | 142 | 161 | IPR004000 | - | |
| Cla02g01971 | 377 | PRINTS | Actin signature | 238 | 254 | IPR004000 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cla02g01971 | Cla-Chr2:34771151 | Cla09g01310 | Cla-Chr9:20336805 | 0 | dispersed | |
| Cla07g00303 | Cla-Chr7:3424689 | Cla02g01971 | Cla-Chr2:34771151 | 0 | transposed | |
| Cla09g00372 | Cla-Chr9:3638922 | Cla02g01971 | Cla-Chr2:34771151 | 1.62E-61 | transposed | |
| Cla10g01670 | Cla-Chr10:32418651 | Cla02g01971 | Cla-Chr2:34771151 | 0 | transposed | |
| Cla05g02622 | Cla-Chr5:37418935 | Cla02g01971 | Cla-Chr2:34771151 | 5.36E-69 | transposed | |
| Cla06g01479 | Cla-Chr6:28340784 | Cla02g01971 | Cla-Chr2:34771151 | 4.08E-45 | transposed | |
| Cla02g01971 | Cla-Chr2:34771151 | Cla04g00809 | Cla-Chr4:23142506 | 0 | wgd | |
| Cla02g01971 | Cla-Chr2:34771151 | Cla09g01925 | Cla-Chr9:36902101 | 0 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cla02g01971 | K10355 | - | csin:114318813 | 753.436 |