Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g01971 ATGGCAGAAGGGGAGGATATTCAGCCACTTGTCTGCGACAATGGAACAGGAATGGTCAAGGCTGGCTTTGCTGGAGATGATGCTCCAAGGGCCGTGTTTCCTAGTATAGTAGGTCGACCAAGGCATACTGGTGTGATGGTTGGAATGGGGCAAAAGGATGCGTATGTTGGGGATGAAGCTCAGTCGAAACGTGGTATATTAACACTGAAATATCCCATTGAACATGGTATAGTGAGCAATTGGGATGATATGGAGAAAATTTGGCATCATACCTTTTACAATGAACTCCGAGTGGCTCCTGAAGAGCACCCTGTCCTTCTCACTGAAGCACCTCTGAACCCTAAGGCAAACCGTGAAAAAATGACCCAAATCATGTTCGAAACCTTCAACACTCCTGCCATGTATGTCGCCATTCAGGCTGTTCTTTCCCTCTATGCTAGTGGACGCACAACTGGTATTGTCTTAGATTCTGGAGACGGTGTTAGTCACACTGTCCCAATTTACGAGGGGTATGCTCTTCCCCACGCCATACTCCGTCTCGACCTTGCTGGCCGTGACCTCACTGATGCCCTTATGAAAATCTTGACTGAACGTGGGTATTCCTTCACCACCACAGCTGAGCGTGAAATTGTGAGGGACATGAAGGAAAAACTAGCATATATTGCCCTTGACTTTGAGCAAGAACTTGAAACTTCCAAGACTGGTTCATCTGTTGAGAAGAGTTACGAACTGCCTGATGGGCAGGTAATCACAATTGGTGCAGAACGTTTTCGATGTCCTGAAGTTCTTTTCCAGCCTTCAATGATTGGAATGGAAGCTGCAGGCATTCATGAAACAACATATAACTCCATCATGAAATGTGATGTTGATATCAGGAAGGATCTGTATGGAAATATTGTTCTTAGTGGTGGATCAACCATGTTCCCTGGTATTGCTGACAGAATGAGCAAAGAAATAACTGCATTAGCCCCTAGCAGCATGAAAATAAAGGTGGTAGCCCCACCCGAAAGAAAGTACAGTGTCTGGATTGGTGGCTCCATTTTGGCCTCCCTCAGCACGTTTCAGCAGATGTGGATCGCAAAGGCAGAGTATGATGAGTCTGGTCCATCCATCGTGCACAGGAAATGCTTCTGA 1134 46.21 MAEGEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDFEQELETSKTGSSVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 34771151 34773000 - ClCG02G020200.1 Cla02g01971 268097

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g01971 377 Gene3D - 10 371 - -
Cla02g01971 377 SMART actin_3 7 377 IPR004000 -
Cla02g01971 377 SUPERFAMILY Actin-like ATPase domain 6 155 IPR043129 -
Cla02g01971 377 SUPERFAMILY Actin-like ATPase domain 149 377 IPR043129 -
Cla02g01971 377 Pfam Actin 5 377 IPR004000 -
Cla02g01971 377 ProSitePatterns Actins and actin-related proteins signature. 106 118 IPR020902 -
Cla02g01971 377 Gene3D - 140 340 - -
Cla02g01971 377 PANTHER ACTIN 3 1 376 - -
Cla02g01971 377 ProSitePatterns Actins signature 2. 358 366 IPR004001 -
Cla02g01971 377 ProSitePatterns Actins signature 1. 55 65 IPR004001 -
Cla02g01971 377 Gene3D Actin; Chain A, domain 4 182 273 - -
Cla02g01971 377 PANTHER ACTIN 1 376 IPR004000 -
Cla02g01971 377 CDD NBD_sugar-kinase_HSP70_actin 10 183 - -
Cla02g01971 377 PRINTS Actin signature 28 37 IPR004000 -
Cla02g01971 377 PRINTS Actin signature 51 62 IPR004000 -
Cla02g01971 377 PRINTS Actin signature 63 85 IPR004000 -
Cla02g01971 377 PRINTS Actin signature 117 130 IPR004000 -
Cla02g01971 377 PRINTS Actin signature 142 161 IPR004000 -
Cla02g01971 377 PRINTS Actin signature 238 254 IPR004000 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g01971 K10355 ACTF; actin, other eukaryote - csin:114318813 753.436
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g01971 Cla-Chr2:34771151 Cla09g01310 Cla-Chr9:20336805 0 dispersed
Cla07g00303 Cla-Chr7:3424689 Cla02g01971 Cla-Chr2:34771151 0 transposed
Cla09g00372 Cla-Chr9:3638922 Cla02g01971 Cla-Chr2:34771151 1.62E-61 transposed
Cla10g01670 Cla-Chr10:32418651 Cla02g01971 Cla-Chr2:34771151 0 transposed
Cla05g02622 Cla-Chr5:37418935 Cla02g01971 Cla-Chr2:34771151 5.36E-69 transposed
Cla06g01479 Cla-Chr6:28340784 Cla02g01971 Cla-Chr2:34771151 4.08E-45 transposed
Cla02g01971 Cla-Chr2:34771151 Cla04g00809 Cla-Chr4:23142506 0 wgd
Cla02g01971 Cla-Chr2:34771151 Cla09g01925 Cla-Chr9:36902101 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi6g432 . . . Bda09g01504 Bpe01g00134 . . . . . . . . . . Cpe05g00918 . . . . . . . . Cla02g01971 Cam02g2090 Cec02g2127 Cco02g2157 Clacu02g2076 Cmu02g2013 Cre02g2324 Cone1ag0645 . . . . . . . Blo13g01078 Blo14g00119 . . Bpe08g00106 . . Bma11g00120 Sed08g0343 Cmo02g00807 Cmo20g00447 Cma02g00806 Cma20g00406 Car02g00582 Car20g00354 . . Bhi10g00696 Tan05g0383 Cmetu02g1792 . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cla10g01670 . 56 432 Cytoskeleton Gene Families AT2G37620 96.8 7.9e-215 743.0
Cla02g01971 . 1 377 Cytoskeleton Gene Families AT2G37620 96.3 3.9e-214 740.7
Cla07g00303 . 1 377 Cytoskeleton Gene Families AT2G37620 96.0 2.0e-213 738.4
Cla02g00072 CCT 1 377 Cytoskeleton Gene Families AT2G37620 95.5 2.6e-213 738.0
Cla09g01310 . 12 388 Cytoskeleton Gene Families AT2G37620 94.7 2.2e-212 734.9
Cla09g01925 . 4 383 Cytoskeleton Gene Families AT2G37620 94.5 6.5e-209 723.4
Cla01g01535 CCT 1 356 Cytoskeleton Gene Families AT2G37620 95.8 5.5e-200 693.7
Cla04g00809 . 66 383 Cytoskeleton Gene Families AT2G37620 96.5 4.6e-178 620.9
Cla02g01971 . 1 377 Cytoskeleton Gene Families AT5G59370 97.1 5.2e-214 740.3
Cla10g01670 . 56 432 Cytoskeleton Gene Families AT5G59370 97.1 6.7e-214 740.0
Cla07g00303 . 1 377 Cytoskeleton Gene Families AT5G59370 96.6 1.5e-213 738.8
Cla09g01310 . 12 388 Cytoskeleton Gene Families AT5G59370 93.9 9.1e-211 729.6
Cla09g01925 . 4 383 Cytoskeleton Gene Families AT5G59370 95.5 1.2e-210 729.2
Cla02g00072 CCT 1 377 Cytoskeleton Gene Families AT5G59370 94.4 3.5e-210 727.6
Cla01g01535 CCT 1 356 Cytoskeleton Gene Families AT5G59370 94.7 7.5e-197 683.3
Cla04g00809 . 66 383 Cytoskeleton Gene Families AT5G59370 96.2 4.3e-176 614.4
Cla10g01670 . 56 432 Cytoskeleton Gene Families AT3G46520 97.3 3.0e-214 741.1
Cla07g00303 . 1 377 Cytoskeleton Gene Families AT3G46520 96.8 6.7e-214 740.0
Cla02g01971 . 1 377 Cytoskeleton Gene Families AT3G46520 96.8 1.5e-213 738.8
Cla09g01310 . 12 388 Cytoskeleton Gene Families AT3G46520 94.2 4.1e-211 730.7
Cla09g01925 . 4 383 Cytoskeleton Gene Families AT3G46520 95.8 5.3e-211 730.3
Cla02g00072 CCT 1 377 Cytoskeleton Gene Families AT3G46520 94.7 1.6e-210 728.8
Cla01g01535 CCT 1 356 Cytoskeleton Gene Families AT3G46520 94.9 3.4e-197 684.5
Cla04g00809 . 66 383 Cytoskeleton Gene Families AT3G46520 96.5 1.9e-176 615.5
Cla10g01670 . 56 432 Cytoskeleton Gene Families AT3G12110 97.1 3.6e-215 744.2
Cla07g00303 . 1 377 Cytoskeleton Gene Families AT3G12110 97.1 4.7e-215 743.8
Cla02g01971 . 1 377 Cytoskeleton Gene Families AT3G12110 96.6 1.8e-214 741.9
Cla02g00072 CCT 1 377 Cytoskeleton Gene Families AT3G12110 95.5 9.7e-213 736.1
Cla09g01310 . 12 388 Cytoskeleton Gene Families AT3G12110 95.0 2.8e-212 734.6
Cla09g01925 . 4 383 Cytoskeleton Gene Families AT3G12110 94.7 1.0e-209 726.1
Cla01g01535 CCT 1 356 Cytoskeleton Gene Families AT3G12110 95.8 2.1e-199 691.8
Cla04g00809 . 66 383 Cytoskeleton Gene Families AT3G12110 96.2 2.3e-177 618.6
Cla02g00072 CCT 1 377 Cytoskeleton Gene Families AT3G18780 93.1 5.0e-209 723.8
Cla10g01670 . 56 432 Cytoskeleton Gene Families AT3G18780 92.3 1.9e-208 721.8
Cla07g00303 . 1 377 Cytoskeleton Gene Families AT3G18780 92.3 2.5e-208 721.5
Cla02g01971 . 1 377 Cytoskeleton Gene Families AT3G18780 92.0 9.4e-208 719.5
Cla09g01310 . 12 388 Cytoskeleton Gene Families AT3G18780 92.0 1.2e-207 719.2
Cla09g01925 . 3 383 Cytoskeleton Gene Families AT3G18780 91.3 6.7e-206 713.4
Cla01g01535 CCT 1 356 Cytoskeleton Gene Families AT3G18780 93.5 4.8e-196 680.6
Cla04g00809 . 66 383 Cytoskeleton Gene Families AT3G18780 92.8 3.4e-173 604.7
Cla02g00072 CCT 1 377 Cytoskeleton Gene Families AT1G49240 93.4 1.7e-209 725.3
Cla10g01670 . 56 432 Cytoskeleton Gene Families AT1G49240 92.6 6.5e-209 723.4
Cla07g00303 . 1 377 Cytoskeleton Gene Families AT1G49240 92.6 8.5e-209 723.0
Cla09g01310 . 12 388 Cytoskeleton Gene Families AT1G49240 92.3 4.2e-208 720.7
Cla02g01971 . 1 377 Cytoskeleton Gene Families AT1G49240 91.8 2.1e-207 718.4
Cla09g01925 . 2 383 Cytoskeleton Gene Families AT1G49240 91.1 5.2e-206 713.8
Cla01g01535 CCT 1 356 Cytoskeleton Gene Families AT1G49240 93.8 1.7e-196 682.2
Cla04g00809 . 66 383 Cytoskeleton Gene Families AT1G49240 92.8 3.4e-173 604.7
Cla02g00072 CCT 1 377 Cytoskeleton Gene Families AT5G09810 98.4 8.5e-217 749.6
Cla09g01310 . 12 388 Cytoskeleton Gene Families AT5G09810 95.8 3.0e-214 741.1
Cla10g01670 . 56 432 Cytoskeleton Gene Families AT5G09810 96.6 6.7e-214 740.0
Cla02g01971 . 1 377 Cytoskeleton Gene Families AT5G09810 96.0 3.3e-213 737.6
Cla07g00303 . 1 377 Cytoskeleton Gene Families AT5G09810 96.0 3.3e-213 737.6
Cla09g01925 . 4 383 Cytoskeleton Gene Families AT5G09810 94.2 1.9e-208 721.8
Cla01g01535 CCT 1 356 Cytoskeleton Gene Families AT5G09810 98.6 3.1e-203 704.5
Cla04g00809 . 66 383 Cytoskeleton Gene Families AT5G09810 96.5 1.7e-177 619.0
Cla11g00182 . 1 133 Cytoskeleton Gene Families AT2G19760 76.7 9.0e-57 216.5
Cla09g00022 CCT,ECH 1 131 Cytoskeleton Gene Families AT2G19760 72.5 3.8e-55 211.1
Cla07g01272 CCT,ECH 536 666 Cytoskeleton Gene Families AT2G19760 73.3 1.9e-54 208.8
Cla11g01470 . 1 131 Cytoskeleton Gene Families AT2G19760 73.3 5.5e-54 207.2
Cla11g00182 . 1 133 Cytoskeleton Gene Families AT4G29350 76.7 1.5e-56 215.7
Cla09g00022 CCT,ECH 1 131 Cytoskeleton Gene Families AT4G29350 73.3 1.4e-54 209.1
Cla07g01272 CCT,ECH 536 666 Cytoskeleton Gene Families AT4G29350 71.8 2.1e-53 205.3
Cla11g01470 . 1 131 Cytoskeleton Gene Families AT4G29350 71.0 8.8e-52 199.9
Cla11g00182 . 1 133 Cytoskeleton Gene Families AT4G29340 84.3 1.6e-64 242.3
Cla09g00022 CCT,ECH 1 131 Cytoskeleton Gene Families AT4G29340 73.9 3.2e-57 218.0
Cla11g01470 . 1 131 Cytoskeleton Gene Families AT4G29340 73.1 2.5e-54 208.4
Cla07g01272 CCT,ECH 536 666 Cytoskeleton Gene Families AT4G29340 67.9 5.2e-52 200.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000079 8 8 7 8 6 8 16 8 8 7 8 8 15 7 7 14 8 15 16 8 7 7 6 8 8 8 7 14 15 6 276