Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g01975 ATGGAGGAGGATAACAATGGCGGCTCCTTTCGGAGTTTGATTGACTTGGTGAACGATGTAGCTTCAATCTCAGACTACAGGTACGCGGTCAGAAAGCAGTATTGTAATTTAGCAAGACGACTGAAGCTGTTGATCCCATTGTTTGAGGAGATGAGGGATATGAAGCAGCCGCTGCCGGGTCATACCGTGAAAGCTCTTGCTTCGTTGAAGGAAGCTCTGGAATCGACCAAGGAGTTGCTTAAACATGGGAGCGAGGGGAGCAAGATTTATCTGGCCTTGGAGAGAGAGCAAATTTTGAATCAATTTCACGAGGTGACAGCAAGACTAGAGCAAGCTCTGAATGACATTTCACATGAAGATCTTGACATATCTGATGAAGTTAAGGAGCAGGTTGAGCTTGTTCTCTCTCAATTCAAAAGAGCTAGAGGAAGGAATGATACACAAGATGCCGAGCTGTATGTCAACCTCAACTCTCTCTATAACAACAGCAGAGACTCTGTTGATCCTTCTGTCTTGAAAGGACTGGCTGAGAAGTTGCAGCTGATTGATATAGCTGATCTTACTCAAGAGTCTCTTGATTTACATGAAATGGTTTCGGCTAGTGATGGAGATCCAGGGGGGAGATTTGAGAAAATGTCAATATTATTGAAGAAAATAAAAGATTTTATGCTAACTGAAAACCCTGAAATTGGTCTTTCTTCAAAAGAACAAAGTCATCCTCGCACTGGTGGAAAAGTGTCTGCTGGTAAGAAAGATATAGCGTCCCTTCACATACCTGAAGACTTTCGGTGCCCCATATCCCTGGATTTGATGAAAGATCCTGTCATTGTCTCCACAGGACAGACCTATGAACGTGCTTTCATTGAGAAGTGGCTGGCAGATGGACACTCAACATGCCCAAAAACTCAACAAGTTCTCACTAGCAAAATTCTTACACCAAATTATGTTTTACGTAGTCTCATAGCTCAATGGTGTGAGGTCAATGGAATTGAACCGCCACAACGTTCCGGCAGTTCTCAGCCCAGTGAGTCAATGACTCAGGCCGAACGCTCTAAGTATGAAGCTCTACTCCACAAACTCACATCAGGTAAAATTGAAGACAGACGAGCTGCTGCTGGTGAGATTCGCCTTCTAGCCAAACGCAATGCAAATAATCGTGTGGCCATTGCTGAAGCTGGTGCAATCCCTCTCCTTGTTGATCTCCTTTCAACAACAGACCCCCTCACTCAAGAACATGCTGTGACAGCATTGCTTAACCTTTCAATTTGTGACAATAATAAGAGAAGCATTATGTCCTGTAGGGCAGCGCCTGCCATAGTCCATGTGCTGAAGTGGGGGAGTATGGAAGCACGTGAAAATGCTGCTGCCACTCTTTTCAGTCTCTCTGTTGTAGACGAATATAAAATAATGATCGGCGCATCGGGAGCCATTCTGCCACTTATTGCACTACTCAATGAAGGTACTCAAAGGGGGAAGAAGGATGCTGCAACCGCTCTTTTCAACTTGTGTTTCTTCCAAGGGAACAAGATAAAGGCAGTCAGGGGTGGTGTTGTTTCCATTCTGATGCAGCTGTTGACGGAATCTAGAATAGGGATGGTAGATGAGGCCCTAGCAATATTAGCCATACTGGCTAGCAATTCTGAAGGGCGAGCTGCGATTGGAGCAGCCAAATCTGTCCCCATTTTAGTAAATCTCATTGGAACAGGATCCCCTAGGAACAGGGAAAATGCAGCTGCAGTTTTGGTGCATCTTTGCATGGGAGACAAACGACATCTTGTGGAAGCGAAGGAGCTCGGAGTGATTGGTTTGCTTATGGATTTGGCAGAAAATGGCACAGACCGAGGTAAGCGAAAAGCAACACAATTGCTTGACCAAATAAACAGGTTTACAGAGCTGCAGAAAGAGGCTGAGGTTCAGTCTCAGTCTCAAACACAACTGTTATTACCACAACCTTCCGCAATTGGCAACTTCGAAAGCTGA 1980 44.95 MEEDNNGGSFRSLIDLVNDVASISDYRYAVRKQYCNLARRLKLLIPLFEEMRDMKQPLPGHTVKALASLKEALESTKELLKHGSEGSKIYLALEREQILNQFHEVTARLEQALNDISHEDLDISDEVKEQVELVLSQFKRARGRNDTQDAELYVNLNSLYNNSRDSVDPSVLKGLAEKLQLIDIADLTQESLDLHEMVSASDGDPGGRFEKMSILLKKIKDFMLTENPEIGLSSKEQSHPRTGGKVSAGKKDIASLHIPEDFRCPISLDLMKDPVIVSTGQTYERAFIEKWLADGHSTCPKTQQVLTSKILTPNYVLRSLIAQWCEVNGIEPPQRSGSSQPSESMTQAERSKYEALLHKLTSGKIEDRRAAAGEIRLLAKRNANNRVAIAEAGAIPLLVDLLSTTDPLTQEHAVTALLNLSICDNNKRSIMSCRAAPAIVHVLKWGSMEARENAAATLFSLSVVDEYKIMIGASGAILPLIALLNEGTQRGKKDAATALFNLCFFQGNKIKAVRGGVVSILMQLLTESRIGMVDEALAILAILASNSEGRAAIGAAKSVPILVNLIGTGSPRNRENAAAVLVHLCMGDKRHLVEAKELGVIGLLMDLAENGTDRGKRKATQLLDQINRFTELQKEAEVQSQSQTQLLLPQPSAIGNFES 659
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 34817875 34822145 + ClCG02G020260.1 Cla02g01975 268101
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g01975 659 Gene3D - 340 652 IPR011989 -
Cla02g01975 659 CDD RING-Ubox_PUB 262 304 IPR045210 -
Cla02g01975 659 ProSiteProfiles U-box domain profile. 257 331 IPR003613 GO:0004842|GO:0016567
Cla02g01975 659 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 255 331 IPR013083 -
Cla02g01975 659 Gene3D - 9 119 IPR036537 GO:0007166
Cla02g01975 659 Pfam Armadillo/beta-catenin-like repeat 465 503 IPR000225 GO:0005515
Cla02g01975 659 Pfam Armadillo/beta-catenin-like repeat 383 421 IPR000225 GO:0005515
Cla02g01975 659 Pfam Armadillo/beta-catenin-like repeat 546 585 IPR000225 GO:0005515
Cla02g01975 659 SMART arm_5 423 463 IPR000225 GO:0005515
Cla02g01975 659 SMART arm_5 546 586 IPR000225 GO:0005515
Cla02g01975 659 SMART arm_5 464 504 IPR000225 GO:0005515
Cla02g01975 659 SMART arm_5 382 422 IPR000225 GO:0005515
Cla02g01975 659 SMART arm_5 505 545 IPR000225 GO:0005515
Cla02g01975 659 Coils Coil 95 115 - -
Cla02g01975 659 SUPERFAMILY RING/U-box 252 332 - -
Cla02g01975 659 SMART Ubox_2 261 324 IPR003613 GO:0004842|GO:0016567
Cla02g01975 659 Pfam U-box domain 258 328 IPR003613 GO:0004842|GO:0016567
Cla02g01975 659 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 393 431 IPR000225 GO:0005515
Cla02g01975 659 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 11 640 - -
Cla02g01975 659 SUPERFAMILY ARM repeat 354 626 IPR016024 -
Cla02g01975 659 PANTHER U BOX DOMAIN-CONTAINING 11 640 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cla02g01975 Cla03g00152 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g00969 Cla-Chr2:15787377 Cla02g01975 Cla-Chr2:34817875 1.52E-149 dispersed
Cla02g01975 Cla-Chr2:34817875 Cla05g02163 Cla-Chr5:33214404 0 dispersed
Cla03g01327 Cla-Chr3:28299042 Cla02g01975 Cla-Chr2:34817875 4.87E-12 transposed
Cla07g00206 Cla-Chr7:2228698 Cla02g01975 Cla-Chr2:34817875 3.38E-91 transposed
Cla07g00810 Cla-Chr7:22575576 Cla02g01975 Cla-Chr2:34817875 1.15E-19 transposed
Cla08g01067 Cla-Chr8:23370279 Cla02g01975 Cla-Chr2:34817875 5.47E-33 transposed
Cla11g01487 Cla-Chr11:28521662 Cla02g01975 Cla-Chr2:34817875 7.46E-10 transposed
Cla02g01975 Cla-Chr2:34817875 Cla03g00152 Cla-Chr3:1576062 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g01975 - - csv:101221150 1140.18