Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cla02g01976 | ATGGCTCACTCTTCTCTTCCAATCTTCTTAGATCCTCCAAATTGGCATCAACCGAATCAGCCAGCAGCTGCAGCAACAAATGATGTTCATCAAGACCCACGTCAGCTTCCGGCAGCATTTCTACAACCGCCGCCGCCGCCAACGGCAGGTCATGGAGGAGGCGGAATCCGGCCGGGTTCTATGGCGTATAGAGCCCGGCTGGCGATGATTCCCCAGCCGGAGGCAGCACTAAAATGCCCTCGTTGTGATTCTACAAACACCAAATTTTGCTATTTCAACAATTACAGCCTTTCTCAGCCGCGCCACTTCTGTAAAGCTTGCCGCCGGTACTGGACCCGCGGCGGCGCTCTTAGAAACGTCCCCGTCGGTGGTGGCTTTCGCAAGAACAAGAAGAAGAAGAAATCTAACCCGTCTAAGTCCCCCACTGCCTCTCAATCTCAAATGGATCCTCCAAATTGGCATCAACCGAATCAGCCAGCAGCTGCAGCAACAAATGATGTTCATCAAGACCCACGTCAGCTTCCGGCAGCATTTCTACAACCGCCGCCGCCGCCAACGGCAGGTCATGGAGGAGGCGGAATCCGGCCGGGTTCTATGGCGTATAGAGCCCGGCTGGCGATGATTCCCCAGCCGGAGGCAGCACTAAAATGCCCTCGTTGTGATTCTACAAACACCAAATTTTGCTATTTCAACAATTACAGCCTTTCTCAGCCGCGCCACTTCTGTAAAGCTTGCCGCCGGTACTGGACCCGCGGCGGCGCTCTTAGAAACGTCCCCGTCGGTGGTGGCTTTCGCAAGAACAAGAAGAAGAAGAAATCTAACCCGTCTAAGTCCCCCACTGCCTCTCAATCTCAAATGGGTAATTCAAGATCAATAATGTCAAGAAGCTGCAACAACATGGAGAGCAGTAGTACAATGAGGGATTTCCCATCACATTCTTCTTTGCCTTCATTAAATATCCTTCCATCTCTTCAACAACATTTTTCTCGTAATTTTGGAAACAACTTCCCCGGAATTCACATCAATAATTCCGCAGTCGCCAGAGAATACGACGTCGAATGGCAACAACAACAACAACCATTCATCGTGGCCGGACTAGAATCTCCGACGACTGCGACAACAACTGCCGCAGCATACACACAAGCTGAAGTCAACAACAACGGCAACAACAACAACTTTGTTGCTAACTCATTACAACAAGCAGCTGGTTTAGTACAATACAATAATAACTGTCATCAACAACTGCAAAATCTGACACCCTTTTCCAGAATTCCTATGAAAAATGAAGAACAAAACCAAGAACAAGGAATATTATTATCAAATTTCTTACGACCAAATGATCACAACAGCCAGTTTTGGGGAAGTAATCATCAAAATTCATGGACGGATCATTTGTCAGCTCTCAGTTCTTCTTCAAGCAGCCATCTTTTGTAA | 1434 | 48.19 | MAHSSLPIFLDPPNWHQPNQPAAAATNDVHQDPRQLPAAFLQPPPPPTAGHGGGGIRPGSMAYRARLAMIPQPEAALKCPRCDSTNTKFCYFNNYSLSQPRHFCKACRRYWTRGGALRNVPVGGGFRKNKKKKKSNPSKSPTASQSQMDPPNWHQPNQPAAAATNDVHQDPRQLPAAFLQPPPPPTAGHGGGGIRPGSMAYRARLAMIPQPEAALKCPRCDSTNTKFCYFNNYSLSQPRHFCKACRRYWTRGGALRNVPVGGGFRKNKKKKKSNPSKSPTASQSQMGNSRSIMSRSCNNMESSSTMRDFPSHSSLPSLNILPSLQQHFSRNFGNNFPGIHINNSAVAREYDVEWQQQQQPFIVAGLESPTTATTTAAAYTQAEVNNNGNNNNFVANSLQQAAGLVQYNNNCHQQLQNLTPFSRIPMKNEEQNQEQGILLSNFLRPNDHNSQFWGSNHQNSWTDHLSALSSSSSSHLL | 477 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 34830258 | 34834311 | - | ClCG02G020270.1 | Cla02g01976 | 268102 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cla02g01976 | 477 | ProSitePatterns | Zinc finger Dof-type signature. | 79 | 115 | IPR003851 | GO:0003677|GO:0006355 | |
Cla02g01976 | 477 | ProSiteProfiles | Zinc finger Dof-type profile. | 215 | 269 | IPR003851 | GO:0003677|GO:0006355 | |
Cla02g01976 | 477 | PANTHER | DOF ZINC FINGER PROTEIN DOF1.4-RELATED | 13 | 148 | IPR045174 | GO:0003700|GO:0006355 | |
Cla02g01976 | 477 | Pfam | Dof domain, zinc finger | 214 | 269 | IPR003851 | GO:0003677|GO:0006355 | |
Cla02g01976 | 477 | Pfam | Dof domain, zinc finger | 76 | 131 | IPR003851 | GO:0003677|GO:0006355 | |
Cla02g01976 | 477 | MobiDBLite | consensus disorder prediction | 118 | 197 | - | - | |
Cla02g01976 | 477 | PANTHER | DOF DOMAIN ZINC FINGER PROTEIN | 154 | 454 | - | - | |
Cla02g01976 | 477 | PANTHER | DOF ZINC FINGER PROTEIN DOF1.4-RELATED | 154 | 454 | IPR045174 | GO:0003700|GO:0006355 | |
Cla02g01976 | 477 | MobiDBLite | consensus disorder prediction | 259 | 312 | - | - | |
Cla02g01976 | 477 | PANTHER | DOF DOMAIN ZINC FINGER PROTEIN | 13 | 148 | - | - | |
Cla02g01976 | 477 | MobiDBLite | consensus disorder prediction | 276 | 312 | - | - | |
Cla02g01976 | 477 | MobiDBLite | consensus disorder prediction | 11 | 30 | - | - | |
Cla02g01976 | 477 | ProSiteProfiles | Zinc finger Dof-type profile. | 77 | 131 | IPR003851 | GO:0003677|GO:0006355 | |
Cla02g01976 | 477 | MobiDBLite | consensus disorder prediction | 138 | 164 | - | - | |
Cla02g01976 | 477 | MobiDBLite | consensus disorder prediction | 36 | 59 | - | - | |
Cla02g01976 | 477 | ProSitePatterns | Zinc finger Dof-type signature. | 217 | 253 | IPR003851 | GO:0003677|GO:0006355 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cla02g01976 | Cla03g00153 | CCT | |
Cla02g01976 | Cla03g00153 | ECH |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cla02g01976 | Cla-Chr2:34830258 | Cla02g02034 | Cla-Chr2:35380992 | 3.99E-33 | dispersed | |
Cla07g01328 | Cla-Chr7:30502600 | Cla02g01976 | Cla-Chr2:34830258 | 5.99E-60 | transposed | |
Cla10g02000 | Cla-Chr10:35845261 | Cla02g01976 | Cla-Chr2:34830258 | 6.76E-44 | wgd | |
Cla02g01976 | Cla-Chr2:34830258 | Cla03g00153 | Cla-Chr3:1596413 | 1.05E-45 | wgd | |
Cla02g01976 | Cla-Chr2:34830258 | Cla03g00236 | Cla-Chr3:2815578 | 1.09E-31 | wgd | |
Cla02g01976 | Cla-Chr2:34830258 | Cla04g00818 | Cla-Chr4:23231374 | 1.85E-43 | wgd | |
Cla02g01976 | Cla-Chr2:34830258 | Cla07g00304 | Cla-Chr7:3441324 | 2.32E-47 | wgd | |
Cla02g01976 | Cla-Chr2:34830258 | Cla09g01940 | Cla-Chr9:36993735 | 2.79E-39 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
60719 | PF02701 | zf-Dof | 8.00E-33 | No_clan | Cla | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cla02g01976 | - | - | csv:101220917 | 456.062 |