Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g01976 ATGGCTCACTCTTCTCTTCCAATCTTCTTAGATCCTCCAAATTGGCATCAACCGAATCAGCCAGCAGCTGCAGCAACAAATGATGTTCATCAAGACCCACGTCAGCTTCCGGCAGCATTTCTACAACCGCCGCCGCCGCCAACGGCAGGTCATGGAGGAGGCGGAATCCGGCCGGGTTCTATGGCGTATAGAGCCCGGCTGGCGATGATTCCCCAGCCGGAGGCAGCACTAAAATGCCCTCGTTGTGATTCTACAAACACCAAATTTTGCTATTTCAACAATTACAGCCTTTCTCAGCCGCGCCACTTCTGTAAAGCTTGCCGCCGGTACTGGACCCGCGGCGGCGCTCTTAGAAACGTCCCCGTCGGTGGTGGCTTTCGCAAGAACAAGAAGAAGAAGAAATCTAACCCGTCTAAGTCCCCCACTGCCTCTCAATCTCAAATGGATCCTCCAAATTGGCATCAACCGAATCAGCCAGCAGCTGCAGCAACAAATGATGTTCATCAAGACCCACGTCAGCTTCCGGCAGCATTTCTACAACCGCCGCCGCCGCCAACGGCAGGTCATGGAGGAGGCGGAATCCGGCCGGGTTCTATGGCGTATAGAGCCCGGCTGGCGATGATTCCCCAGCCGGAGGCAGCACTAAAATGCCCTCGTTGTGATTCTACAAACACCAAATTTTGCTATTTCAACAATTACAGCCTTTCTCAGCCGCGCCACTTCTGTAAAGCTTGCCGCCGGTACTGGACCCGCGGCGGCGCTCTTAGAAACGTCCCCGTCGGTGGTGGCTTTCGCAAGAACAAGAAGAAGAAGAAATCTAACCCGTCTAAGTCCCCCACTGCCTCTCAATCTCAAATGGGTAATTCAAGATCAATAATGTCAAGAAGCTGCAACAACATGGAGAGCAGTAGTACAATGAGGGATTTCCCATCACATTCTTCTTTGCCTTCATTAAATATCCTTCCATCTCTTCAACAACATTTTTCTCGTAATTTTGGAAACAACTTCCCCGGAATTCACATCAATAATTCCGCAGTCGCCAGAGAATACGACGTCGAATGGCAACAACAACAACAACCATTCATCGTGGCCGGACTAGAATCTCCGACGACTGCGACAACAACTGCCGCAGCATACACACAAGCTGAAGTCAACAACAACGGCAACAACAACAACTTTGTTGCTAACTCATTACAACAAGCAGCTGGTTTAGTACAATACAATAATAACTGTCATCAACAACTGCAAAATCTGACACCCTTTTCCAGAATTCCTATGAAAAATGAAGAACAAAACCAAGAACAAGGAATATTATTATCAAATTTCTTACGACCAAATGATCACAACAGCCAGTTTTGGGGAAGTAATCATCAAAATTCATGGACGGATCATTTGTCAGCTCTCAGTTCTTCTTCAAGCAGCCATCTTTTGTAA 1434 48.19 MAHSSLPIFLDPPNWHQPNQPAAAATNDVHQDPRQLPAAFLQPPPPPTAGHGGGGIRPGSMAYRARLAMIPQPEAALKCPRCDSTNTKFCYFNNYSLSQPRHFCKACRRYWTRGGALRNVPVGGGFRKNKKKKKSNPSKSPTASQSQMDPPNWHQPNQPAAAATNDVHQDPRQLPAAFLQPPPPPTAGHGGGGIRPGSMAYRARLAMIPQPEAALKCPRCDSTNTKFCYFNNYSLSQPRHFCKACRRYWTRGGALRNVPVGGGFRKNKKKKKSNPSKSPTASQSQMGNSRSIMSRSCNNMESSSTMRDFPSHSSLPSLNILPSLQQHFSRNFGNNFPGIHINNSAVAREYDVEWQQQQQPFIVAGLESPTTATTTAAAYTQAEVNNNGNNNNFVANSLQQAAGLVQYNNNCHQQLQNLTPFSRIPMKNEEQNQEQGILLSNFLRPNDHNSQFWGSNHQNSWTDHLSALSSSSSSHLL 477
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 34830258 34834311 - ClCG02G020270.1 Cla02g01976 268102
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g01976 477 ProSitePatterns Zinc finger Dof-type signature. 79 115 IPR003851 GO:0003677|GO:0006355
Cla02g01976 477 ProSiteProfiles Zinc finger Dof-type profile. 215 269 IPR003851 GO:0003677|GO:0006355
Cla02g01976 477 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 13 148 IPR045174 GO:0003700|GO:0006355
Cla02g01976 477 Pfam Dof domain, zinc finger 214 269 IPR003851 GO:0003677|GO:0006355
Cla02g01976 477 Pfam Dof domain, zinc finger 76 131 IPR003851 GO:0003677|GO:0006355
Cla02g01976 477 MobiDBLite consensus disorder prediction 118 197 - -
Cla02g01976 477 PANTHER DOF DOMAIN ZINC FINGER PROTEIN 154 454 - -
Cla02g01976 477 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 154 454 IPR045174 GO:0003700|GO:0006355
Cla02g01976 477 MobiDBLite consensus disorder prediction 259 312 - -
Cla02g01976 477 PANTHER DOF DOMAIN ZINC FINGER PROTEIN 13 148 - -
Cla02g01976 477 MobiDBLite consensus disorder prediction 276 312 - -
Cla02g01976 477 MobiDBLite consensus disorder prediction 11 30 - -
Cla02g01976 477 ProSiteProfiles Zinc finger Dof-type profile. 77 131 IPR003851 GO:0003677|GO:0006355
Cla02g01976 477 MobiDBLite consensus disorder prediction 138 164 - -
Cla02g01976 477 MobiDBLite consensus disorder prediction 36 59 - -
Cla02g01976 477 ProSitePatterns Zinc finger Dof-type signature. 217 253 IPR003851 GO:0003677|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cla02g01976 Cla03g00153 CCT
Cla02g01976 Cla03g00153 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g01976 Cla-Chr2:34830258 Cla02g02034 Cla-Chr2:35380992 3.99E-33 dispersed
Cla07g01328 Cla-Chr7:30502600 Cla02g01976 Cla-Chr2:34830258 5.99E-60 transposed
Cla10g02000 Cla-Chr10:35845261 Cla02g01976 Cla-Chr2:34830258 6.76E-44 wgd
Cla02g01976 Cla-Chr2:34830258 Cla03g00153 Cla-Chr3:1596413 1.05E-45 wgd
Cla02g01976 Cla-Chr2:34830258 Cla03g00236 Cla-Chr3:2815578 1.09E-31 wgd
Cla02g01976 Cla-Chr2:34830258 Cla04g00818 Cla-Chr4:23231374 1.85E-43 wgd
Cla02g01976 Cla-Chr2:34830258 Cla07g00304 Cla-Chr7:3441324 2.32E-47 wgd
Cla02g01976 Cla-Chr2:34830258 Cla09g01940 Cla-Chr9:36993735 2.79E-39 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60719 PF02701 zf-Dof 8.00E-33 No_clan Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g01976 - - csv:101220917 456.062