Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g02020 ATGGAACCGTTGGATAAACCAGCGCCGAAGTCCTCGCCACTCGCGCCATTTCCTCGGGACTCTCGAGGATCCTTAGAGGTTTTCAATCCCTCGGCCACTTACACGTCCAGACCTCGGGCGAACCCCACGTGGCCCAATTGGGTGGAGCCACGTAGCAGTGCGGAGTCGGACTCAGCCAAACTCGTCGCGAAACCGGCGAGTAAAACCGGCGAGGAAATAACGTCATGGATGGCTTTCAAGGACTCAAACCCTTCCCCACAACCCTCATCCCCACTCGCTCAGAAGACAATATCGGCGATTCTCAGCGACAAATCGCCAACCGGGAAAGCGAAATCGGCGGACGAAGTGGGTTCTGCCGCCCTACGCGCTGCGGAGTGGGGATTAGTACTGAAAACCGATACAGAGACTGGGAAGCCACAAGGCGTTGGAGTTCGAACTTCGGGCGGCGATGAACCGAATACGAAACAGGAAAACTCTAGAAGGACTTCGAATAACTCGGTGCGGAGTTCGGGCGACATGTCGGAAGAAGGGGGAAGAGAAAGAGGGATTCCGAGAGTGTCTGAAGATTTGAAAGACGCTCTGTCGACATTTCAACAAACATTTGTTGTGTCCGATGCTACAAAACCTGATTATCCGATTATGTATGCTAGTGCTGGATTTTTCAAGATGACTGGCTATACTTCCAAGGAGGTTATTGGAAGGAACTGTCGATTTTTACAGGGTGCGGATACGGACCCTGAAGATGTGGCTAAGATCCGAGAAGCTTTACAAGCGGGGACGAGTTACTGTGGAAGGTTGTTGAATTACAAGAAAGATGGGACCCCATTTTGGAACCTTCTTACTATTTCACCAATCAAAGATGATGATGGCAAAGTTCTTAAATTTATTGGAATGCAAGTGGAGGTAAGCAAACACACGGAGGGATTTAAAGATAAGATGGTCCGTCCCAATGGCTTGCCAGAATCCTTGATTCGTTATGATGCCCGTCAAAAGGAGATGGCTACAAGTTCGGTAACGGAGCTTGTGCAGGCGGTGAAAAGGCCTCGGTCTGTAAGTGAATATAGGCCTCGGGCTCTAAGTGAATCTATGAACCGCCGGTTATTTAGAAAATCAGGCGGTGGAGGCGGCGGCGGCGGTGACAACAACGACGACAGATTTGAAACCACTATGATTAGGCGAAAGTCAGAGAGTGCAGCACCTCCAACTGGTCGGAAATCGCAGGGAGGAAGTAGAAGATCGATGCAGCGTATCAATGAGCTGCCGGAGAAGAAACCCAAAAAGTCTAGCCGTCGTTCATTTATGGGGATTATGAGGAAAAGTCAATCAAATGTTGAAAGTATTGACATTGAAGATGGTTCCGTGGAGGATAATGAGACCGATGACGATGTTCGGCCAGATAGCGTCGACGACAAAGTAAGGCAGAGGGAAATGAGGAAGGGTATTGATTTAGCTACTACCCTTGAACGTATAGAGAAAAACTTTGTGATTACTGATCCTAGATTGCCTGACAATCCCATTATATTTGCATCTGATAGCTTCCTGGAGCTAACCGAGTACAGTAGAGAAGAAATCTTGGGAAGAAATTGTAGATTTCTGCAAGGTCCTGAAACCGATCGAGCAACCGTCAAGAAAATAAGAGATGCAATCGACAATCAAACAGAAGTTACAGTGCAGCTTATTAACTACACAAAAAGCGGTAAGAAGTTTTGGAACCTGTTTCATCTACAACCTATGCGTGACCAGAAGGGTGAAGTCCAGTATTTTATTGGAGTACAACTCGACGGTAGTCAACACGTGGAACCGCTAAGCAATTGCATACCGGATAATACTGCAAAGGAGGGCGAGAAATTGATAAAAGAAACCGCAGAAAATGTTGATTTGGCAGCCAGAGAACTTCCTGATGCCAATTTGACACCAGAAGATTTATGGGCAAATCACTCTAAGATGGTTCAACCAAAACCTCACAGAAAGGATAGTCCTTCTTGGAAAGCTATCCAGAAGATTTTAGACAGCGGAGAACAGATAGGACTGAAACATTTCAAGCCAGTGAAGCCTTTGGGATCCGGTGATACTGGCAGCGTGCATTTGGTAGAATTGTGTGGGACTGATCAATATTTTGCAATGAAGGCAATGGATAAGGGTGTAATGCTCAACCGCAACAAGGTCCATAGAGCTTGCGCCGAGAGGGAAATACTTGACATGTTGGATCATCCTTTTCTTCCTGCATTATACGCTTCATTTCAGACAAAAACACATGTTTGTCTTATAACTGATTACTGCCCTGGTGGAGAACTCTTTCTGCTTTTGGATAGACAACCCACAAAGGTCATAAAGGAAGATGCTGTAAGGTTTTATGCTGCTGAAGTTATCGTCGCATTGGAATATCTCCATTGTCAAGGGATAATTTACCGGGATCTAAAGCCTGAGAATGTTCTACTCCAAAGCAACGGACACGTTGCCTTGACGGATTTTGACTTGTCATGTTTGACTTCTTGTAAACCTCAGCTTTTGCTTCCAACAACAAATGAGAAGAAAAAGCAATCAAGAGCTCAACAAGCTCCGATCTTTATGGCCGAACCAATGCGAGCATCGAACTCCTTCGTTGGAACCGAAGAGTACATAGCACCGGAAATCATTACTGGGGCTGGCCATACTAGTGCAGTGGACTGGTGGGCTTTGGGTATTCTTCTATATGAAATGCTTTATGGATATACACCCTTTAGAGGGAAGACAAGGCAAAAGACATTTGCTAACATTCTTCATAAGGATCTTAAATTTCCAAGAAGTATATCGGCTAGTCTCAATGCAAAGCAGTTAATCTTTAGGTTATTGCATAGAGATCCCAAAAACCGATTAGGTTCTCGAGAAGGAGCTAGCGAAATCAAACGACATCCTTTCTTCCGAGGCGTCAATTGGGCGCTGGTTCGTTGCATGAATCCTCCCGAGCTCGAAGCACCTCTTTTCCAGGCGACCGATGCCGAAAAAGATGCTAATAAGGCATCAGATTTTGATCTAAAAGAACTTGAACTCAGTGTTTTCTGA 3042 45.79 MEPLDKPAPKSSPLAPFPRDSRGSLEVFNPSATYTSRPRANPTWPNWVEPRSSAESDSAKLVAKPASKTGEEITSWMAFKDSNPSPQPSSPLAQKTISAILSDKSPTGKAKSADEVGSAALRAAEWGLVLKTDTETGKPQGVGVRTSGGDEPNTKQENSRRTSNNSVRSSGDMSEEGGRERGIPRVSEDLKDALSTFQQTFVVSDATKPDYPIMYASAGFFKMTGYTSKEVIGRNCRFLQGADTDPEDVAKIREALQAGTSYCGRLLNYKKDGTPFWNLLTISPIKDDDGKVLKFIGMQVEVSKHTEGFKDKMVRPNGLPESLIRYDARQKEMATSSVTELVQAVKRPRSVSEYRPRALSESMNRRLFRKSGGGGGGGGDNNDDRFETTMIRRKSESAAPPTGRKSQGGSRRSMQRINELPEKKPKKSSRRSFMGIMRKSQSNVESIDIEDGSVEDNETDDDVRPDSVDDKVRQREMRKGIDLATTLERIEKNFVITDPRLPDNPIIFASDSFLELTEYSREEILGRNCRFLQGPETDRATVKKIRDAIDNQTEVTVQLINYTKSGKKFWNLFHLQPMRDQKGEVQYFIGVQLDGSQHVEPLSNCIPDNTAKEGEKLIKETAENVDLAARELPDANLTPEDLWANHSKMVQPKPHRKDSPSWKAIQKILDSGEQIGLKHFKPVKPLGSGDTGSVHLVELCGTDQYFAMKAMDKGVMLNRNKVHRACAEREILDMLDHPFLPALYASFQTKTHVCLITDYCPGGELFLLLDRQPTKVIKEDAVRFYAAEVIVALEYLHCQGIIYRDLKPENVLLQSNGHVALTDFDLSCLTSCKPQLLLPTTNEKKKQSRAQQAPIFMAEPMRASNSFVGTEEYIAPEIITGAGHTSAVDWWALGILLYEMLYGYTPFRGKTRQKTFANILHKDLKFPRSISASLNAKQLIFRLLHRDPKNRLGSREGASEIKRHPFFRGVNWALVRCMNPPELEAPLFQATDAEKDANKASDFDLKELELSVF 1013
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 35196819 35211613 - ClCG02G020700.2 Cla02g02020 268146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g02020 1013 PANTHER PHOTOTROPIN-1 134 1013 - -
Cla02g02020 1013 TIGRFAM sensory_box: PAS domain S-box protein 213 305 IPR000014 -
Cla02g02020 1013 TIGRFAM sensory_box: PAS domain S-box protein 504 594 IPR000014 -
Cla02g02020 1013 SUPERFAMILY Protein kinase-like (PK-like) 657 988 IPR011009 -
Cla02g02020 1013 Gene3D PAS domain 467 632 - -
Cla02g02020 1013 CDD PAS 213 302 IPR000014 -
Cla02g02020 1013 MobiDBLite consensus disorder prediction 347 473 - -
Cla02g02020 1013 MobiDBLite consensus disorder prediction 400 414 - -
Cla02g02020 1013 MobiDBLite consensus disorder prediction 147 172 - -
Cla02g02020 1013 CDD PAS 494 594 IPR000014 -
Cla02g02020 1013 MobiDBLite consensus disorder prediction 350 364 - -
Cla02g02020 1013 ProSiteProfiles PAS repeat profile. 186 257 IPR000014 -
Cla02g02020 1013 SUPERFAMILY PYP-like sensor domain (PAS domain) 207 299 IPR035965 -
Cla02g02020 1013 MobiDBLite consensus disorder prediction 26 53 - -
Cla02g02020 1013 SMART serkin_6 680 967 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla02g02020 1013 MobiDBLite consensus disorder prediction 449 463 - -
Cla02g02020 1013 Pfam PAS domain 207 303 IPR000014 -
Cla02g02020 1013 Pfam PAS domain 502 594 IPR000014 -
Cla02g02020 1013 Gene3D Phosphorylase Kinase; domain 1 679 763 - -
Cla02g02020 1013 ProSiteProfiles PAC domain profile. 260 314 IPR000700 -
Cla02g02020 1013 PANTHER FLIPPASE KINASE 1-RELATED 134 1013 - -
Cla02g02020 1013 MobiDBLite consensus disorder prediction 434 448 - -
Cla02g02020 1013 Gene3D PAS domain 200 356 - -
Cla02g02020 1013 MobiDBLite consensus disorder prediction 131 184 - -
Cla02g02020 1013 ProSiteProfiles PAC domain profile. 553 607 IPR000700 -
Cla02g02020 1013 ProSiteProfiles PAS repeat profile. 483 552 IPR000014 -
Cla02g02020 1013 ProSitePatterns Protein kinases ATP-binding region signature. 686 709 IPR017441 GO:0005524
Cla02g02020 1013 Gene3D Transferase(Phosphotransferase) domain 1 764 978 - -
Cla02g02020 1013 ProSitePatterns Serine/Threonine protein kinases active-site signature. 801 813 IPR008271 GO:0004672|GO:0006468
Cla02g02020 1013 MobiDBLite consensus disorder prediction 76 105 - -
Cla02g02020 1013 Pfam Protein kinase domain 682 967 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla02g02020 1013 MobiDBLite consensus disorder prediction 1 114 - -
Cla02g02020 1013 SMART pas_2 481 550 IPR000014 -
Cla02g02020 1013 SMART pas_2 188 257 IPR000014 -
Cla02g02020 1013 ProSiteProfiles Protein kinase domain profile. 680 967 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla02g02020 1013 SUPERFAMILY PYP-like sensor domain (PAS domain) 495 594 IPR035965 -
Cla02g02020 1013 SMART pac_2 263 305 IPR001610 -
Cla02g02020 1013 SMART pac_2 556 598 IPR001610 -
Cla02g02020 1013 CDD STKc_phototropin_like 678 986 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g00317 Cla-Chr2:3073844 Cla02g02020 Cla-Chr2:35196819 1.38E-14 dispersed
Cla02g02020 Cla-Chr2:35196819 Cla02g02140 Cla-Chr2:36457569 8.59E-114 dispersed
Cla05g02191 Cla-Chr5:33542257 Cla02g02020 Cla-Chr2:35196819 3.28E-54 dispersed
Cla09g00744 Cla-Chr9:7341099 Cla02g02020 Cla-Chr2:35196819 1.61E-54 dispersed
Cla11g01178 Cla-Chr11:24694370 Cla02g02020 Cla-Chr2:35196819 9.99E-08 dispersed
Cla02g02020 Cla-Chr2:35196819 Cla02g01047 Cla-Chr2:21465560 8.16E-19 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80380 PF00069 Pkinase 4.30E-63 CL0016 Cla PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g02020 K20715 - csv:101214662 1877.06