Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g02027 ATGTTTGATCTTAATCTCAATGTTGACTCGCCTGATGCCTCTCAGAATGAGAACTCCGTTGTGTTCTTTGAGAAGCTTCCTCAAGGCTCGGGGAACCAAATGGATGAGTCAGGAACTTCCAATTCTTCGATTGTCAATGCGGATACCTCCAGCAATGGTGGCGATGACGACTCGTGTTCCACACGCGCTGGTGGTGAGCTCTTCACGTTCAGCTTCGAGATATTGAAGGCTGGAAGCGCGAACGACGTTGTTACGAAGGAGCTTTTTCCAATAGGTGGAGCGCTGAATGCTGACTTCGGGATTCTTCAGGGGCATAACTCCGCCTCTTCTTCGTCAACTTCATCGAGGAAGAACTGGATCAACCTTGCGTTTGATCGAAGCGGGTCAGCAGGGGAGGGGAGAGTGGTTCAGCCGGTTCAGCCTCAGCCGGTGAAGAAGAGCAGGAGGGGACCGAGGTCTCGGAGCTCGCAGTACAGAGGCGTCACATTCTACCGGAGGACTGGGCGGTGGGAATCTCATATCTGGGACTGTGGGAAGCAAGTCTATCTCGGTGGATTCGACACTGCACATTCTGCAGCAAGAGCATACGATCGAGCTGCTATCAAGTTCAGAGGGGTCGATGCTGACATTAATTTCAATCTTAGTGATTATGAGGATGATCTGAAACAGTTTCCTGTATCCATTGATAACATTCTCGAGCAGATGAAGAATTTAAGCAAGGAAGAGTTTGTTCACATACTTCGTCGCCAGAGTACTGGTTTCTCAAGAGGGAGCTCCAAATATAGAGGGGTTACACTGCACAAATGTGGCCGATGGGAAGCTAGAATGGGGCAGCTCCTTGGGAAAAAGTATATATATCTTGGGCTATTCGACAGCGAGGTAGAAGCTGCAAGGGCTTATGACAAGGCAGCAATCAAATGTAATGGGCGGGAGGCAGTGACCAACTTTGAGCCTAGCACATACGGAGAGAGAATTTCTGAGGGCGGCAGTGAAGGTGGGCGGAACATGCTCGATTTGAATTTAGGGATTTCACCTCCCTCACTTAACAACTGTCCAAAGGATACTGAGGGGCATCTGCGGTTTCAATCTGGTCCTTGTTATGCTAACGACAGGAGCACAATGATGGAGAGCAATGCTGATGCAGCAGTTAGCGATCCACCTTTGAAAGGACCGGTAATGACATCAGAGCATGCTCCCTTATGGAATGGTTTACAAACTAGCTTCTTTCCTTCTGAGGAAATCGTGACAGAGAAGAGACTTGCATTAGGTTCATCCCAAGGAGTCACCCCCAACTGGGGATGGCAAATTCATAGCCAGGTTAATTCCACCCAAGTGCCACTGTTCTCTGCTGCAGCATCATCAGGATTCTCATTTTCAGCTACCCATTTCCCGGCTGCCATCCATCCACTGTGCCGTCCGGGCTCGACCGCCCATAACCTCCATTTCACTTCTGCCAAGGCTTCCCTCAACTCCCCTCAGTATCACCACCAGTTGAACCCACAACAGGCACCGCCATAA 1518 49.87 MFDLNLNVDSPDASQNENSVVFFEKLPQGSGNQMDESGTSNSSIVNADTSSNGGDDDSCSTRAGGELFTFSFEILKAGSANDVVTKELFPIGGALNADFGILQGHNSASSSSTSSRKNWINLAFDRSGSAGEGRVVQPVQPQPVKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHSAARAYDRAAIKFRGVDADINFNLSDYEDDLKQFPVSIDNILEQMKNLSKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQLLGKKYIYLGLFDSEVEAARAYDKAAIKCNGREAVTNFEPSTYGERISEGGSEGGRNMLDLNLGISPPSLNNCPKDTEGHLRFQSGPCYANDRSTMMESNADAAVSDPPLKGPVMTSEHAPLWNGLQTSFFPSEEIVTEKRLALGSSQGVTPNWGWQIHSQVNSTQVPLFSAAASSGFSFSATHFPAAIHPLCRPGSTAHNLHFTSAKASLNSPQYHHQLNPQQAPP 505
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 35285902 35289377 - ClCG02G020780.1 Cla02g02027 268153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g02027 505 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-7 1 468 - -
Cla02g02027 505 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 468 - -
Cla02g02027 505 CDD AP2 259 319 IPR001471 GO:0003700|GO:0006355
Cla02g02027 505 SMART rav1_2 260 323 IPR001471 GO:0003700|GO:0006355
Cla02g02027 505 SMART rav1_2 157 219 IPR001471 GO:0003700|GO:0006355
Cla02g02027 505 CDD AP2 157 215 IPR001471 GO:0003700|GO:0006355
Cla02g02027 505 ProSiteProfiles AP2/ERF domain profile. 157 213 IPR001471 GO:0003700|GO:0006355
Cla02g02027 505 ProSiteProfiles AP2/ERF domain profile. 260 317 IPR001471 GO:0003700|GO:0006355
Cla02g02027 505 PRINTS Ethylene responsive element binding protein signature 299 319 IPR001471 GO:0003700|GO:0006355
Cla02g02027 505 PRINTS Ethylene responsive element binding protein signature 261 272 IPR001471 GO:0003700|GO:0006355
Cla02g02027 505 SUPERFAMILY DNA-binding domain 259 318 IPR016177 GO:0003677
Cla02g02027 505 MobiDBLite consensus disorder prediction 131 158 - -
Cla02g02027 505 Pfam AP2 domain 157 205 IPR001471 GO:0003700|GO:0006355
Cla02g02027 505 Pfam AP2 domain 259 309 IPR001471 GO:0003700|GO:0006355
Cla02g02027 505 MobiDBLite consensus disorder prediction 28 58 - -
Cla02g02027 505 Gene3D AP2/ERF domain 156 214 IPR036955 GO:0003700|GO:0006355
Cla02g02027 505 Gene3D AP2/ERF domain 259 318 IPR036955 GO:0003700|GO:0006355
Cla02g02027 505 SUPERFAMILY DNA-binding domain 156 214 IPR016177 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g01658 Cla-Chr1:31446250 Cla02g02027 Cla-Chr2:35285902 6.08E-99 dispersed
Cla02g01199 Cla-Chr2:25549354 Cla02g02027 Cla-Chr2:35285902 3.07E-90 dispersed
Cla02g01360 Cla-Chr2:27922666 Cla02g02027 Cla-Chr2:35285902 4.18E-53 dispersed
Cla02g02027 Cla-Chr2:35285902 Cla07g01336 Cla-Chr7:30575443 1.54E-09 dispersed
Cla10g01959 Cla-Chr10:35434753 Cla02g02027 Cla-Chr2:35285902 1.74E-100 wgd
Cla02g02027 Cla-Chr2:35285902 Cla04g00866 Cla-Chr4:23672593 8.85E-111 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60724 PF00847 AP2 3.20E-09 CL0081 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g02027 K09284 - csv:101222024 910.983