Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g02031 ATGGAAGAGTTCTTAGACAATATACCTCCCATGGATCTGATGCGTTCCGAGAAGATGACTTTTGTCCAGCTTATTATCCCCGTTGAGTCCGCTCATCGAGCCATTTCTTACCTTGGCGAGCTTGGCATCCTTCAATTTAGAGATTTAAACGTGGACAAAAGTCCTTTCCAGAGAACCTTTGTTAACCAGGTAAAGCGATGTGCAGAGATGTCAAGGAAGCTAAGATTTTTCAAAGACCAAATCAGTAAAGCTGGTGTACTGGCATCTACACGCCCAATTCTTCAAGAACATATTGAGCTAGAGGATTTAGAGATACGACTGGCTGATCATGAGCATGAGCTGATTGAAATGAACTCTAACAGCGAGAAACTTCGACAGTCATATAATGAACTATTAGAATTCAAGATGGTATTGCAAAAGGCAAGCGTCTTTCTGGTGTCCAGTAATAGCCATTCAGTTTCAGAAGAAAGGGAGTTGAATGAAAATGTTTTCTTGAATGATAACTATGTTGAGGATGGATCATTACTTGAACAGGAAATGAGACCTGGACCATCCAACCAATCTGGTTTGAGATTTATTTGCGGAATTATTTGTAAATCCAAAGCTCTTAGATTTGAAAGGATGCTGTTTCGTGCAACAAGGGGAAATATGCTTTTCAATCAGGCACCAGCAGATGTACAGATCATGGATCCCATATCTACAGAAATGGTTGAGAAAACAGTATTTGTTGTGTTTTTCTCTGGGGAGCAGGCCAGAAACAAAGTTTTGAAGATCTGTGAGGCTTTTGGAGCAAATTGCTATCCTGTTCCTGAAGATATAACCAAACAAAGGCAGATAACTAGAGAAGTGTCATCTCGCCTCACTGAACTTGAGGCCACTTTAGATGCTGGGATCCGTCACCGAAATGAGGCTCTTGCATCAATAGGGTTTCATTTGATTAAATGGATGAATATGGTAAGAAGGGAAAAGGCTGTATATGATACATTGAACATGTTGAATTTTGATGTCACTAAAAAATGTCTTGTTGGAGAAGGGTGGTGCCCAATCTTTGCAAAAACTCAGATTCAGGAGGCACTGCAGCGAGCAACATTTGATAGCAGTTCACAAGTGGGGATAATATTTCATGTAATGGATACGGTTGAATCCCCTCCTACATATTTTAGAACAAACCGTTTGACAAATGCTTTTCAAGAAATTGTTGATGCCTATGGTGTTGCTAGATATCAAGAAGCAAATCCTGCAGTTTACACTGTTATTACATTTCCATTCCTATTCGCAGTGATGTTTGGGGATTGGGGTCATGGAATATGTTTGTTGCTTGGAGCTTTATTTCTTATAGCTCGTGAAAGTAAGCTCAATAATCAGAAATTAGGAAGCTTTATGGAGATGCTATTTGGTGGCCGCTATGTTCTTCTTTTGATGTCCCTATTTTCAATTTATTGTGGGTTGATCTACAATGAGTTCTTCTCTGTTCCGTATCATATATTTGGCTCCTCTGCTTACAAGTGTCGAGATAATTCATGCAGTGATGCACACACTGTTGGCTTAGTTAAATACCGTGATCCCTATCCATTTGGTGTTGACCCAAGCTGGCGTGGAAGTCGTTCGGAACTTCCTTTTCTGAACTCTCTTAAAATGAAGTTGTCTATCTTGTTGGGTATTGCCCAAATGAACTTAGGGATCATATTGAGTTATTTTAATGCCCGTTTTACTGGAAGCTCACTTGATATCAGGTACCAGTTTGTACCACAAGTGATCTTCCTTAACAGTCTTTTTGGATATCTTTCTCTTCTCATTGTCATCAAGTGGTGCACTGGATCTCAAGCAGACCTCTATCATGTGATGATTTACATGTTTTTAAGCCCATTTGATGATCTTGGCGAGAATGAATTGTTTTGGGGCCAAAGACCTCTTCAAATTATCTTGTTGATGTTGGCTATAGTTGCAGTGCCTTGGATGCTTTTTCCTAAACCCTTTATCTTGAAAAAGATTCACACAGAGAGATTTCAAGGTCGTACTTATGGGATCCTTGGAACCTCTGAGGTAGATCTTGAGGTGGAACCTGATTCAGCAAGGCAACACCAAGACGACTTCAATTTTAGTGAGATCTTTGTTCACCAAATGATTCACTCCATAGAATTTGTCTTGGGTGCAGTTTCAAATACAGCATCGTATCTCCGACTTTGGGCTTTAAGCTTGGCGCACTCAGAACTATCAACAGTTTTCTATGAGAAAGTACTCCTCTTAGCTTGGGGGTATAACAGCTTTGTCATCCGGCTGATTGGTTTAGCTGTTTTTTCGTTTGCCACTGCTTTCATACTTCTTATGATGGAGACCCTTAGTGCCTTCCTTCATGCACTGCGTCTTCATTGGGTTGAGTTTCAAAATAAGTTCTACCATGGTGATGGCCACAAGTTCAAACCTTTTTCCTTTGCCTCCATTGACGAGGACGAAGATTAA 2460 40.24 MEEFLDNIPPMDLMRSEKMTFVQLIIPVESAHRAISYLGELGILQFRDLNVDKSPFQRTFVNQVKRCAEMSRKLRFFKDQISKAGVLASTRPILQEHIELEDLEIRLADHEHELIEMNSNSEKLRQSYNELLEFKMVLQKASVFLVSSNSHSVSEERELNENVFLNDNYVEDGSLLEQEMRPGPSNQSGLRFICGIICKSKALRFERMLFRATRGNMLFNQAPADVQIMDPISTEMVEKTVFVVFFSGEQARNKVLKICEAFGANCYPVPEDITKQRQITREVSSRLTELEATLDAGIRHRNEALASIGFHLIKWMNMVRREKAVYDTLNMLNFDVTKKCLVGEGWCPIFAKTQIQEALQRATFDSSSQVGIIFHVMDTVESPPTYFRTNRLTNAFQEIVDAYGVARYQEANPAVYTVITFPFLFAVMFGDWGHGICLLLGALFLIARESKLNNQKLGSFMEMLFGGRYVLLLMSLFSIYCGLIYNEFFSVPYHIFGSSAYKCRDNSCSDAHTVGLVKYRDPYPFGVDPSWRGSRSELPFLNSLKMKLSILLGIAQMNLGIILSYFNARFTGSSLDIRYQFVPQVIFLNSLFGYLSLLIVIKWCTGSQADLYHVMIYMFLSPFDDLGENELFWGQRPLQIILLMLAIVAVPWMLFPKPFILKKIHTERFQGRTYGILGTSEVDLEVEPDSARQHQDDFNFSEIFVHQMIHSIEFVLGAVSNTASYLRLWALSLAHSELSTVFYEKVLLLAWGYNSFVIRLIGLAVFSFATAFILLMMETLSAFLHALRLHWVEFQNKFYHGDGHKFKPFSFASIDEDED 819
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
2 35337462 35347977 - ClCG02G020810.2 Cla02g02031 268157

Annotation


Select Seq ID Length Analysis Description Start End IPR GO
Cla02g02031 819 Pfam V-type ATPase 116kDa subunit family 37 811 IPR002490 GO:0033179|GO:0046961|GO:1902600
Cla02g02031 819 PANTHER VACUOLAR PROTON ATPASES 5 819 IPR002490 GO:0033179|GO:0046961|GO:1902600
Cla02g02031 819 PANTHER VACUOLAR PROTON ATPASE A1 5 819 - -
Cla02g02031 819 PIRSF ATP6V0A1 9 819 IPR026028 GO:0000220|GO:0046961
Cla02g02031 819 Coils Coil 93 127 - -
       

Pathway


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g02031 K02154 ATPeV0A, ATP6N; V-type H+-transporting ATPase subunit a - csv:101216514 1616.67
       

Dupl-types


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g02031 Cla-Chr2:35337462 Cla08g01448 Cla-Chr8:27365651 3.45E-09 dispersed
Cla02g02031 Cla-Chr2:35337462 Cla02g00497 Cla-Chr2:4907715 0 transposed
       

Deco-Alignment


Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi6g328 . . Bda02g00785 Bda09g01479 Bpe01g00166 . . . . . . . . . . Cpe05g00871 . . . . . . . . Cla02g02031 Cam02g2151 Cec02g2193 Cco02g2230 Clacu02g2138 Cmu02g2073 Cre02g2386 . . . . . . Chy11g01306 Cme11g01758 . . . . Bpe08g00136 . Bma07g00127 . Sed01g0903 Cmo02g00864 Cmo20g00495 Cma02g00864 Cma20g00461 Car02g00626 Car20g00400 . . Bhi10g00598 Tan05g0297 Cmetu03g1529 . Hepe08g0853 . . . . . . . . . . . . .
       

Syn-Families


Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cla08g01633 . 1 998 Primary Pumps ATPases(2) AT1G10130 83.3 0.0e+00 1629.4
Cla02g02031 . 1 814 Primary Pumps ATPases(2) AT2G28520 81.6 0.0e+00 1345.9
Cla02g00497 . 10 813 Primary Pumps ATPases(2) AT2G28520 62.8 1.2e-292 1002.7
Cla08g01448 . 1 854 Primary Pumps ATPases(2) AT2G28520 55.5 2.8e-273 938.3
Cla02g00497 . 6 818 Primary Pumps ATPases(2) AT2G21410 75.7 0.0e+00 1233.8
Cla08g01448 . 1 859 Primary Pumps ATPases(2) AT2G21410 64.9 0.0e+00 1109.7
Cla02g02031 . 9 818 Primary Pumps ATPases(2) AT2G21410 62.6 3.0e-299 1024.6
Cla02g00497 . 8 818 Primary Pumps ATPases(2) AT4G39080 76.9 0.0e+00 1235.7
Cla08g01448 . 1 859 Primary Pumps ATPases(2) AT4G39080 65.5 0.0e+00 1110.1
Cla02g02031 . 9 818 Primary Pumps ATPases(2) AT4G39080 63.5 3.3e-298 1021.1
Cla08g01441 . 160 298 Primary Pumps ATPases(2) AT4G34720 99.3 3.8e-61 231.1
Cla11g01536 . 101 238 Primary Pumps ATPases(2) AT4G34720 99.3 1.5e-60 229.2
Cla11g01536 . 75 238 Primary Pumps ATPases(2) AT1G75630 80.3 3.3e-66 248.4
Cla08g01441 . 2 164 Primary Pumps ATPases(2) AT1G75630 79.7 1.8e-64 242.7
Cla11g01536 . 76 238 Primary Pumps ATPases(2) AT2G16510 99.4 4.6e-74 274.2
Cla08g01441 . 3 164 Primary Pumps ATPases(2) AT2G16510 98.1 5.6e-72 267.3
Cla11g01536 . 74 195 Primary Pumps ATPases(2) AT1G19910 99.2 5.6e-53 203.8
Cla08g01441 . 1 122 Primary Pumps ATPases(2) AT1G19910 98.4 1.3e-52 202.6
Cla08g01299 . 4 180 Primary Pumps ATPases(2) AT2G25610 84.2 3.2e-70 261.9
Cla05g01759 . 2 201 Primary Pumps ATPases(2) AT2G25610 64.5 1.7e-55 213.0
Cla11g01536 . 101 238 Primary Pumps ATPases(2) AT4G38920 99.3 4.1e-60 227.6
Cla08g01441 . 161 298 Primary Pumps ATPases(2) AT4G38920 99.3 4.1e-60 227.6
Cla08g01299 . 1 180 Primary Pumps ATPases(2) AT4G32530 73.3 1.6e-71 266.2
Cla05g01759 . 19 201 Primary Pumps ATPases(2) AT4G32530 63.8 1.0e-57 220.3
Cla03g00170 . 1 1097 Primary Pumps ATPases(2) AT1G07810 78.2 0.0e+00 1655.6
Cla03g00170 . 1 1097 Primary Pumps ATPases(2) AT1G07670 78.0 0.0e+00 1655.2
Cla08g01633 . 1 998 Primary Pumps ATPases(2) AT1G10130 83.3 0.0e+00 1629.4
Cla03g00170 . 22 1078 Primary Pumps ATPases(2) AT4G00900 63.8 0.0e+00 1304.3
Cla03g01661 . 1 126 Primary Pumps ATPases(2) AT4G02620 84.1 4.0e-57 217.6
Cla02g00408 . 6 488 Primary Pumps ATPases(2) AT1G76030 96.1 4.7e-268 920.2
Cla10g01933 . 300 407 Primary Pumps ATPases(2) AT3G01390 80.6 3.9e-37 151.0
Cla01g00801 . 1 376 Primary Pumps ATPases(2) AT1G12840 83.2 1.3e-180 629.4
Cla09g02164 . 1027 1274 Primary Pumps ATPases(2) AT3G58730 82.3 1.1e-111 399.8
Cla10g01560 . 43 495 Primary Pumps ATPases(2) AT3G42050 77.7 2.0e-201 698.7
Cla11g01536 . 76 238 Primary Pumps ATPases(2) AT2G16510 99.4 4.6e-74 274.2
Cla08g01441 . 3 164 Primary Pumps ATPases(2) AT2G16510 98.1 5.6e-72 267.3
Cla02g00408 . 1 488 Primary Pumps ATPases(2) AT4G38510 95.9 3.0e-270 927.5
Cla05g01452 . 92 273 Primary Pumps ATPases(2) AT1G64200 73.0 1.7e-64 242.7
Cla02g00408 . 9 488 Primary Pumps ATPases(2) AT1G20260 95.8 9.8e-266 912.5
Cla02g02031 . 1 814 Primary Pumps ATPases(2) AT2G28520 81.6 0.0e+00 1345.9
Cla02g00497 . 10 813 Primary Pumps ATPases(2) AT2G28520 62.8 1.2e-292 1002.7
Cla08g01448 . 1 854 Primary Pumps ATPases(2) AT2G28520 55.5 2.8e-273 938.3
Cla10g01421 . 98 488 Primary Pumps ATPases(2) AT3G28715 82.6 5.4e-186 647.1
Cla05g01452 . 92 310 Primary Pumps ATPases(2) AT4G11150 76.4 1.6e-85 312.8
Cla09g00150 . 1 623 Primary Pumps ATPases(2) AT1G78900 93.3 0.0e+00 1171.4
Cla02g00408 . 6 488 Primary Pumps ATPases(2) AT1G76030 96.1 4.7e-268 920.2
Cla02g00408 . 1 488 Primary Pumps ATPases(2) AT4G38510 95.9 3.0e-270 927.5
Cla02g00408 . 9 488 Primary Pumps ATPases(2) AT1G20260 95.8 9.8e-266 912.5
Cla01g00801 . 1 376 Primary Pumps ATPases(2) AT1G12840 83.2 1.3e-180 629.4
Cla09g02164 . 1027 1274 Primary Pumps ATPases(2) AT3G58730 82.3 1.1e-111 399.8
Cla05g01452 . 92 310 Primary Pumps ATPases(2) AT4G11150 76.4 1.6e-85 312.8
Cla05g01452 . 92 310 Primary Pumps ATPases(2) AT3G08560 68.5 7.7e-75 277.3
Cla05g01452 . 92 273 Primary Pumps ATPases(2) AT1G64200 73.0 1.7e-64 242.7
Cla03g01661 . 1 126 Primary Pumps ATPases(2) AT4G02620 84.1 4.0e-57 217.6
Cla10g01933 . 300 407 Primary Pumps ATPases(2) AT3G01390 80.6 3.9e-37 151.0
Cla10g01560 . 43 495 Primary Pumps ATPases(2) AT3G42050 77.7 2.0e-201 698.7
Cla02g02031 . 1 814 Primary Pumps ATPases(2) AT2G28520 81.6 0.0e+00 1345.9
Cla02g00497 . 10 813 Primary Pumps ATPases(2) AT2G28520 62.8 1.2e-292 1002.7
Cla08g01448 . 1 854 Primary Pumps ATPases(2) AT2G28520 55.5 2.8e-273 938.3
Cla02g00497 . 6 818 Primary Pumps ATPases(2) AT2G21410 75.7 0.0e+00 1233.8
Cla08g01448 . 1 859 Primary Pumps ATPases(2) AT2G21410 64.9 0.0e+00 1109.7
Cla02g02031 . 9 818 Primary Pumps ATPases(2) AT2G21410 62.6 3.0e-299 1024.6
Cla02g00497 . 8 818 Primary Pumps ATPases(2) AT4G39080 76.9 0.0e+00 1235.7
Cla08g01448 . 1 859 Primary Pumps ATPases(2) AT4G39080 65.5 0.0e+00 1110.1
Cla02g02031 . 9 818 Primary Pumps ATPases(2) AT4G39080 63.5 3.3e-298 1021.1
Cla08g01441 . 160 298 Primary Pumps ATPases(2) AT4G34720 99.3 3.8e-61 231.1
Cla11g01536 . 101 238 Primary Pumps ATPases(2) AT4G34720 99.3 1.5e-60 229.2
Cla11g01536 . 74 195 Primary Pumps ATPases(2) AT1G19910 99.2 5.6e-53 203.8
Cla08g01441 . 1 122 Primary Pumps ATPases(2) AT1G19910 98.4 1.3e-52 202.6
Cla11g01536 . 101 238 Primary Pumps ATPases(2) AT4G38920 99.3 4.1e-60 227.6
Cla08g01441 . 161 298 Primary Pumps ATPases(2) AT4G38920 99.3 4.1e-60 227.6
Cla11g01536 . 75 238 Primary Pumps ATPases(2) AT1G75630 80.3 3.3e-66 248.4
Cla08g01441 . 2 164 Primary Pumps ATPases(2) AT1G75630 79.7 1.8e-64 242.7
Cla11g01536 . 76 238 Primary Pumps ATPases(2) AT2G16510 99.4 4.6e-74 274.2
Cla08g01441 . 3 164 Primary Pumps ATPases(2) AT2G16510 98.1 5.6e-72 267.3
Cla08g01299 . 1 180 Primary Pumps ATPases(2) AT4G32530 73.3 1.6e-71 266.2
Cla05g01759 . 19 201 Primary Pumps ATPases(2) AT4G32530 63.8 1.0e-57 220.3
Cla08g01299 . 4 180 Primary Pumps ATPases(2) AT2G25610 84.2 3.2e-70 261.9
Cla05g01759 . 2 201 Primary Pumps ATPases(2) AT2G25610 64.5 1.7e-55 213.0
Cla10g01421 . 98 488 Primary Pumps ATPases(2) AT3G28710 84.7 4.7e-193 670.6
Cla10g01421 . 98 488 Primary Pumps ATPases(2) AT3G28715 82.6 5.4e-186 647.1
Cla03g00170 . 1 1097 Primary Pumps ATPases(2) AT1G07810 78.2 0.0e+00 1655.6
Cla03g00170 . 22 1078 Primary Pumps ATPases(2) AT4G00900 63.8 0.0e+00 1304.3
Cla08g01633 . 1 998 Primary Pumps ATPases(2) AT1G10130 83.3 0.0e+00 1629.4
Cla03g00170 . 1 1097 Primary Pumps ATPases(2) AT1G07670 78.0 0.0e+00 1655.2
       

Syn-Orthogroups


Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000455 4 5 5 3 4 3 5 3 3 3 3 3 6 3 3 5 3 6 6 3 3 3 3 3 3 3 3 7 4 4 115