Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g02039 ATGGAAGGGAGTGATTCAATCGCCACCGTTTCATCAACTCCGCTATCTCAATCTCCTTCTTCTTCTTCTTCTCCGGCACCGCCGCCGCCCGTCGTTCTCAGTCCATGTGCGGCCTGCAAGATTTTGAGACGGCGATGTGCCGAACGATGTGTTTTGGCGCCTTATTTCCCTCCCACTGAGCCGGCGAAGTTCGCCATCGCTCATCGAGTTTTTGGCGCCAGCAATATCATCAAATTCTTGCAGGAACTGCCTGAATCTCAAAGGGCAGATGCAGTGAGCAGCTTGGTTTATGAAGCAAGTGCGAGAATTAGAGACCCTGTTTATGGATCAGCAGGGGCCATTTGCCAACTTCAAAAGCAAGTCAATGAGCTTCAAGCGCAGCTAGCCAAGGCTCAGGCTGAGGTTGTGAACATGCAATGCCAACAAGCCAATCTTGTGGCCTTTGTTTGCAGGGAATTGGCTCAGTCTCATCATCAGTCTTTTGATGATTTCAATGGCAGCCCTCATAATGGCTTATTATTCCAGAGCATCAGCCCAAGCTACTTTGATGATAGCAATGTAAACTCATTGTGGGAACCTCTTTGGACATGA 591 49.07 MEGSDSIATVSSTPLSQSPSSSSSPAPPPPVVLSPCAACKILRRRCAERCVLAPYFPPTEPAKFAIAHRVFGASNIIKFLQELPESQRADAVSSLVYEASARIRDPVYGSAGAICQLQKQVNELQAQLAKAQAEVVNMQCQQANLVAFVCRELAQSHHQSFDDFNGSPHNGLLFQSISPSYFDDSNVNSLWEPLWT 196
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 35442150 35443284 + ClCG02G020910.1 Cla02g02039 268165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g02039 196 MobiDBLite consensus disorder prediction 1 30 - -
Cla02g02039 196 MobiDBLite consensus disorder prediction 1 20 - -
Cla02g02039 196 ProSiteProfiles LOB domain profile. 34 135 IPR004883 -
Cla02g02039 196 Pfam Lateral organ boundaries (LOB) domain 35 132 IPR004883 -
Cla02g02039 196 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 11 193 - -
Cla02g02039 196 PANTHER LOB DOMAIN-CONTAINING PROTEIN 1-LIKE 11 193 - -
Cla02g02039 196 Coils Coil 114 141 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g02039 Cla-Chr2:35442150 Cla03g00230 Cla-Chr3:2765872 5.61E-82 dispersed
Cla02g01367 Cla-Chr2:28053777 Cla02g02039 Cla-Chr2:35442150 2.21E-77 transposed
Cla02g02039 Cla-Chr2:35442150 Cla03g00228 Cla-Chr3:2736726 9.03E-72 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60726 PF03195 LOB 3.80E-41 No_clan Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g02039 - - csv:101215067 306.99